RNA id: XM_036940612.1


Basic Information

Item Value
RNA id XM_036940612.1
length 6622
RNA type mRNA
GC content 0.48
exon number 15
gene id LOC110534340
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18627912 ~ 18646884 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gAGACTATCTTATCACATTCACCTTGCATCAAGGGTTACGGTGTTTAACAGCAATAACTTTATTATGCAAGTGTAGAAGCAATAGTAGTAATGAGAAGGCAAAACTTACTTTGAAATCTAGGAACAAAGTTAAGTATTTTACTCCAATGAGAGGAGGCGAGGCAAAGGAAACGGAAGGCGAGGCATACTTTGTATATCTAATACAACTGCCATTTTGTTTTTCAGTTGAAGATCCAATGCAGCTACGGTTGTTATTGTGAAAATGGCTTTATTCGACGTTTAGATATTGCttttagtgtgtttttttcttAAATTTAAAAACTGTCTTGTTGAGAAGTAGTGGATGGTAGAGTAAAAGACCGAAGGACCAACTTTCCTTGTATATTGTGATTTAATTGTTCATGTTTACGTTACGGGTCTTCTGGCCTACAACGTTCTATTAGAttggtactgtagctagctagttatctcGGTGGCAAAATGGCGGCGAATACGACCCAGACAGCTCCAGCTGCTAACTGGTCGTATGGTGCAGCAGCAGGTCCAGAGGGCCAGACGGTCTCGGAAAACCCAGAGTGGGAGAAGGCCAGACAGGCACTGGCCTCCATCAGCAAGACCCAGAGCGCCACCAAGACCGCTCAGGCCAACCGGACCACAGCACAGGCTGGTCAGTTTCAGCCTGTAGTAACTGAGTCCACAGCcatacagcagcagcaacagcagcagtacTACCAACAGTGGTACCAACAGAACCAGCAGCAACCGTATCCTGGATACACCTACCCCTACAATTACTACTACCCCATGGCGCCGGGCCCCtatggtggtggtggctATCCTCCTCAGGGCCAGTATGGTGTACCTCCAGGACCTTACCCCTCTCCCACCACTCCAACTGGACAGCCTCCATCCCTGCCCGTGATGGATGACCAGTCCTCCAGCTACCCCTCTCAGCCCCAACCCCCTCCTCCTGCTGCACCTCAACCACCCCcccagagccccaccagctctgagcagcccccacccccccctcccccagccatccctccccctcccaaCTCCCAGTACCCCCTTCCTCCAGGGCAGAACTCTTACAACCCCAACAACCCCATGCCCTACCCCAACAATGACCCCAACCAGATGAGAGGTTACAACCACAACCAGGGCAGGCCCAGCTATGGGCAGAGCTACCAGACTCAGAACTCGTACCAGCAGCAGCAGAATAACAACCAACACCAGCAACAAGGACAGGGTCAGTATGGACCAggagctgggagaggagaggccaacaaaaacaagaaccatcaacaacaacagccacagcAACAAGGACCGCAGCTCTGGCACCGCATGAAACAGGCACCTGGAGCAGGTGCGATGAAGTTCAACATTCCCAAGCGACCCTACGTCATGACCAATCAGAGTTTCCCTCCTGGGGAACAACCCACTGGATTGGCtgctactccttcctccccagcTGCTGCTCCTGCGACACCTGGCGGTGCCCAGACACGGCCCCAGGACTGGCCCCAGGCGATGAAGGAGTATGTTCAGCGCTGCTTCACAGCCTGTGAGAATGAGGAGGACAAGGACCGCACCGAAAAGGGTCTGAAGGAGGTCCTACAGAAAAGACTACAGGATGGGTCTGCCTACACCATCGACTGGGACCGCGAGCCTCTGCCTGAaCTGAAGGCCAAGCAGTCTCGCTGGGAGGCTGTACCCACCCAAAGGACTCTGGAGAGTTCTGTGGGCCGTGGTGGGGGTACAGGTGGGGCTACGCgtggcaggggtggtggggccaGGCTGGGACACTACAGGAACGTCTTCTCCCAGAGAAGCCCCTCATCCAGCTCCTCAGGCTCctcctctcgctccccctctccctcccacaacCGACACAGGGACCGCAATGGCCAGAGACACAGGCGCAGTGACTCTGAGTCCCAGTCGGACAGCAGCATGTCCAGTGACCTCCGAACCCAGCTTCCCCGGCGCAATCAGAAAGGAGGGCGTGGCCGTGGGGGCGACAGGGACCGAggcagagggggtggagagaggggacgaggaagGGGCGGAAGAGGCAACAGAGGACGGAGAAACATGGATGACGCTAACTCCACCGTCCTGGGCAAGAAGAGAAAAGGTGGGAACGCCGGCCTGGACTTCCACGACCCCCACCGGGAGGCCAAGAAACAAAGCCGAGCGGCACGCTTCCACAACACCAAGATGCGCTCAGAGCCCCTGGTGCTGTCCATCAACAACCTGGAGCTGCCCAAGGAGGACCTGAGCTGGGACGACTGCCCCATTGTGGGCACCTGCCAAGAGATCACCAAGATCTACCTGAGACTCACCTGTGCCCCTGACCCTGCCACCGTGCGTCCCGTATCTGTGCTGAGGAAGTCTCTGTTGGCTGTGAAGGCCCACTGGAAGACCCGTCAGGACTACCCCTACGCCTGTGAACAGATGAAGTCCATACGACAGGACCTCACGGTCCAAGGAGTTCGTACAGAGTTCACAGTGGAAGTATACGAGTGCCATGCACGCATTGCTCTAGAAAAGGGCGACCACGCAGAGTTCAACCAGTGCCAGATGCAGCTGAAGGCCCTGTATAAGGACAACCCGTCAGAGAACATAGGGGAGTTCACTGCTTACAGACTACTCTACTATATCTTCACTAAAAACTCTGGAGacaTCACGACTGAGCTGGTGTACCTGACTGCGGCGCTGCGGGCGGATGAGTGTGTGTCCCACGCGCTCTCCCTCCGCGCCGCCTGGGCTCTGGGAAACTTCCACCGGTTTTTCCAGCTCTACCGGAGAGCCCCACGCATGGCATCCTACCTCATAGACAAgtttgtagagagggagaggatgatcgCTCTCAGGGCCTTATTCAAAACATTCAGACCAGACTTGCCGGTGGAGTATGTGCAGTCCAGTCTGGGCTTCCTTTGTTTAGACTCTTGCATGGCCTTCCTCACAGGCCTGGGGGTCACCTTCTTCCCCTCTGACCCCAGCAAGATAGACTGCAAGATCAGCTCAGCCTGTCTGGCAGCCTCCTGAGGGGGTGGGGTGTTTACCGGGGAGGGGGGAAAGCACACTAAAGTGAGATAGACAGGGTCAGGAATGTACcctacagttatactgcactacacttcAGGAGGGAGGCTAGTGGTTAGACTGAAACTACAATTTAGTCCTGTAGAAAGAGGGAGATATGCACTAGGACCCACTAAATCACTTAGGGCTGAAAATTCAGTGAGGATCCCACCCACAGATGCAATGTGCTCACAGATATGGACTGTATAACAAGAGTGGGGGAGATTATCTGCATACATGCTGCACATCAAATACATTTAGAATAGCTTAGTCCCACACATCTCTGATCAGCTCAAGATATTAATTATACCTTCGACTTAGAACATTTTAATGACGAACAGATGATGTTAGGCATTAGTTCAATGTAAGACCCGAAGATCAAGCACCAACTCACACAGATCAGGGAAGAGTGTAGCCTCAAGGTCTCCCATCCACTATCGCTCTCAGAAGTTTTAAGCTAACAGTGTTCTGTTATGTTTTTCCTTCCCTCAAGTCAACAGCCTCAAAACTCATGCGAAGACAAGCCTTGAGAACCCAAGAGGGAGATGAAAACGAAATGAGCTAAAGTCATCCCTCAAGCCCTCATCCAACAGGCTGCTCATCCACTCCAAAACCAAACCATCAACCAGAGAAGAGGTTTGTCTGTTCAGGTGTTCAGCTCTAGAGACTGTGCTAGCCCTTTGCTGCCTTCAGGAAGCCTTCGTGATCCAGCGTCCAAtccgggagaggaggagatggtggtTTGTATGTCCTGTCCCCCCTTCCCTCAAGCTGTCTACGATTGGCGATCAGGTGGGGAAAGTTACCCCCACTTCCTGTTCCTGCGTAGCCCTGCACACTTGTCACCCCTGAAAGGTATTGACTGAGAAATCTAAAGGTTCTGATTGGCTCCTTGCCCAGGTTGGCCACAGCCATCCTTACCCCACAGTTGTCTGCTACCCACAGTCCCCTGCTTCACCCTTCAACAGTCGTCACCCAGAGTTCACCAAAGTTTGACCACAAAGTTCACAATATAGAAGATCTCTAATATAGAAGATCTCCAAGCTTGGCGTCTAGTCCCTTCTGGTAGGCATTGACTTATAAAGTGTGATGGTGGATACAGTCCCCTAATATTTACCAAGAATGGCCTCTGCAATCCCTCGGTATGTGTCCAGGAGGCAGGATATCCACCTATAGTCCATCTATCCCCTGAGAGCAGACAAGGAGGCAGTCTCCCACCCCTTAAGAGTACCAAATAACCAAGTTGAGGCCCTGAGCGAGCCTGTGGTGTTTCCTGAGTTACCCGATCAACAGCCCCCTCAGCAGCATGGAATAGCAGTCGTCAAGCACTCCCATCACACAGGAAGAAGTCAGCTCCATCAAGATGGTGGCAAAGTCTTCACCTTCAAATATGGTGGCTGGATCAGTCCCGCCACACAACAGACGGAGATGAGATCGCTGTCTGTGCAGATGGCAGCAACGTCTGGGTTTGTATGCTCCACACTCCGTTCAATAAGGCTGAGTATGTATGGCTGGTAAGAAAAAGGACTCTTGGTGTGCTGGAAGGAGGTGGAGGACAGCACGGCAAAGATCACCTGGTATTCACTATTGGCTCATTCACAAACACTAACCATTGGTTTGGGTTAAGGTGTATGATATCAAGTTTATGGTAATTACTTAAATTCCATCCACATCATGATAGTGTGTCTGAAATTGTGATATAAAATTAAGGGTGCCAGTATTAACCCCCTCATTTTTAAAAGAATGATGAAGCCAAACTGTCAAATTATACAGGTGCAGATACACAAATTCAGGTTTAAAAGGTAACTGTCCTCAATTGAAAATTGTCATTCTGCCACAAAACATTAGTTTAGGACATTAATGTTGACGGCTAAAGCATACAAGACTCTGCTTATCAAATGTTTGTCTGTAATCAAATAATCTGCTTATTTATTTAAAGCTAAGAAATCATGTGATATTTTTAAAACCCCATTGCAGACATTTTGGTTTTCAGTAAAGGCAGGTGAGAGTGAAGGATTGTAGAGTAGTTATTTTGGGGTCCTATCCAGCAGTTATACATTAGGCTACATCCCTGTGTATACTCTTGATAAGATCTGATGCGAGGAGACTAGTGTGGAGAGTTAATTGTAAATCAACATAATTGTCAATACATAAATAGAACCTAGAAATGGAACATGGGTTGGTGATATCAGTTGGTGATATCAGTTGATCTAAAACCCCTTGTTTTCAGGCATGACCTTGAAGAGTATTAACTTGATTCACATCAAAGCTCGAGGTATTTTAGTGAGTTCAGTTCCATTGCGGAgatatcaaatgtatttgtcacatgcactgaatacaaccgGTTCAGACTGAAATGCTTCCCtgcgagccctttcccaacaatgcagagttaaaaagaaaAATTATATAAATTCAAAAAGGATttggtaacacaataaaataactaaCGAGGCTATACACAAGATAGGACTCAACTTTCAGGATGACCAGAAGTCTGTGCTGTAACAAATGTCCTGTGTGCTCATCTATAGAGTCTGTGTCAGTATCTAATGTACATTGTTATGGATTCAGTTGGCCTTGTTATGGATTCAGTTGACATTGTAATGGATTCAGTTGGCCTTTATTCATTGGACATTTTGATATGTTTTATGTTTACCAGGGCAAGTGTAATTTTGACAAACGTATATGGTGAATGAGAAGCTGAAGCATTTTAGATATGGGTaataaaaaatgtgttcttaagaCAATTGATGTGAAAATGTAAATTATAGTTACAAATCTAAAGTTGGATGATTTGGAATACATTGCCTGTTTTTGATATTGCCGTGGATTTAAATGGGGAATTGATAGTAACTGCTTTTTGTAGTGCAAACACTTGCGTGGTTTCTACACTATATTTTTGACCGCTCATTCAATAAGTGTGCAGTGCAGGTTTATACTTTGGGCTTTTACAGGGATTGAAAATGGGATATTTGCTGTATAAACCAAATATTTTTCTTGCCAAATTTCCCTTAGATATGAACACTTGGTTGACCACTTTCATTTCTTACTCATTTTTTTAAATGCTCATCTTTTGTAAACCATTTTTGTTTTTAGATTTGATTTACTGCATGTCTGTGTCATCTCAACCTTTCTGGCTTTCTGTACTCATGAACCTCTtgcagtggtattcaaagtcaGCATCGCGACCCATGAGGGAAATGCAAAAACATTCATAGGTCatattgtatgggacaatataGAAACGATTTTGAAAAGGATAATTTGAAAAATCCATTTTTATTGagcaaatgtatttattggtttaTTTTCATTTCGATGAGATGAACATGTAATGAATTGaaggtacattttttttaaagggtgTCAGTAGGTTTGGAAATTCTGCTGGCCAAAAAAATAGTTCCCCAGAAATTCTGGTGGAAAATAATGGTGTCCCCACTGAAAAAGTTTGAATATCACTGCCTTAGAGATAAGTAATGTACTAAAACCCCCACACAACATCCTGATGGCAAGAGAAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137805 lncRNA downstream 2295 18626958 ~ 18627700 (-) True G119458
TU137787 lncRNA downstream 27310 18602471 ~ 18602685 (-) True G119448
TU137786 lncRNA downstream 27646 18601933 ~ 18602349 (-) True G119447
TU137393 lncRNA downstream 29502 18600195 ~ 18600493 (-) True G119148
TU137381 lncRNA downstream 45930 18583862 ~ 18584065 (-) True G119137
TU137852 lncRNA upstream 37784 18684666 ~ 18684901 (-) True G119499
TU137859 lncRNA upstream 59619 18706501 ~ 18708609 (-) False LOC110536927
TU137858 lncRNA upstream 59936 18706818 ~ 18708609 (-) True LOC110536927
TU137889 lncRNA upstream 118702 18765584 ~ 18767871 (-) False G119532
TU137890 lncRNA upstream 118702 18765584 ~ 18767871 (-) False G119532
XM_021622480.2 mRNA downstream 24354 18603045 ~ 18605641 (-) True LOC110536796
XM_036940549.1 mRNA downstream 39643 18587019 ~ 18590352 (-) True LOC110536773
XM_021622444.2 mRNA downstream 43120 18564603 ~ 18586875 (-) False LOC110536757
XM_036940539.1 mRNA downstream 43120 18564603 ~ 18586875 (-) True LOC110536757
XM_021622434.2 mRNA downstream 43121 18564603 ~ 18586874 (-) False LOC110536757
XM_021622578.2 mRNA upstream 15722 18662604 ~ 18672410 (-) False grwd1
XM_036940626.1 mRNA upstream 15722 18662604 ~ 18672410 (-) True grwd1
XM_021622588.1 mRNA upstream 42066 18688948 ~ 18693820 (-) True LOC110536908
XM_036940648.1 mRNA upstream 48951 18695833 ~ 18708034 (-) False LOC110536927
XM_036940644.1 mRNA upstream 48951 18695833 ~ 18708631 (-) False LOC110536927
TU137371 other downstream 87498 18541052 ~ 18542497 (-) False LOC110536756
TU137320 other downstream 153242 18476454 ~ 18476753 (-) True G119087
TU137198 other downstream 196327 18427562 ~ 18433668 (-) False G119000
TU137031 other downstream 357888 18268548 ~ 18272107 (-) False khdc4
TU136972 other downstream 464882 18162309 ~ 18165113 (-) True LOC110534274
TU137868 other upstream 152618 18799500 ~ 18801387 (-) True G119512
TU138073 other upstream 401425 19048307 ~ 19049030 (-) True G119663
TU139386 other upstream 837455 19484337 ~ 19488232 (-) False cacng6b
TU139389 other upstream 838767 19485649 ~ 19488232 (-) False cacng6b
TU139490 other upstream 1046807 19693689 ~ 19695564 (-) True LOC118944062

Expression Profile