RNA id: TU137796


Basic Information

Item Value
RNA id TU137796
length 5577
lncRNA type sense_over
GC content 0.40
exon number 2
gene id LOC110534340
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18627912 ~ 18646884 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCACACTAAAGTGAGATAGACAGGGTCAGGAATGTACcctacagttatactgcactacacttcAGGAGGGAGGCTAGTGGTTAGACTGAAACTACAATTTAGTCCTGTAGAAAGAGGGAGATATGCACTAGGACCCACTAAATCACTTAGGGCTGAAAATTCAGTGAGGATCCCACCCACAGATGCAATGTGCTCACAGATATGGACTGTATAACAAGAGTGGGGGAGATTATCTGCATACATGCTGCACATCAAATACATTTAGAATAGCTTAGTCCCACACATCTCTGATCAGCTCAAGATATTAATTATACCTTCGACTTAGAACATTTTAATGACGAACAGATGATGTTAGGCATTAGTTCAATGTAAGACCCGAAGATCAAGCACCAACTCACACAGATCAGGGAAGAGTGTAGCCTCAAGGTCTCCCATCCACTATCGCTCTCAGAAGTTTTAAGCTAACAGTGTTCTGTTATGTTTTTCCTTCCCTCAAGTCAACAGCCTCAAAACTCATGCGAAGACAAGCCTTGAGAACCCAAGAGGGAGATGAAAACGAAATGAGCTAAAGTCATCCCTCAAGCCCTCATCCAACAGGCTGCTCATCCACTCCAAAACCAAACCATCAACCAGAGAAGAGGTTTGTCTGTTCAGGTGTTCAGCTCTAGAGACTGTGCTAGCCCTTTGCTGCCTTCAGGAAGCCTTCGTGATCCAGCGTCCAAtccgggagaggaggagatggtggtTTGTATGTCCTGTCCCCCCTTCCCTCAAGCTGTCTACGATTGGCGATCAGGTGGGGAAAGTTACCCCCACTTCCTGTTCCTGCGTAGCCCTGCACACTTGTCACCCCTGAAAGGTATTGACTGAGAAATCTAAAGGTTCTGATTGGCTCCTTGCCCAGGTTGGCCACAGCCATCCTTACCCCACAGTTGTCTGCTACCCACAGTCCCCTGCTTCACCCTTCAACAGTCGTCACCCAGAGTTCACCAAAGTTTGACCACAAAGTTCACAATATAGAAGATCTCTAATATAGAAGATCTCCAAGCTTGGCGTCTAGTCCCTTCTGGTAGGCATTGACTTATAAAGTGTGATGGTGGATACAGTCCCCTAATATTTACCAAGAATGGCCTCTGCAATCCCTCGGTATGTGTCCAGGAGGCAGGATATCCACCTATAGTCCATCTATCCCCTGAGAGCAGACAAGGAGGCAGTCTCCCACCCCTTAAGAGTACCAAATAACCAAGTTGAGGCCCTGAGCGAGCCTGTGGTGTTTCCTGAGTTACCCGATCAACAGCCCCCTCAGCAGCATGGAATAGCAGTCGTCAAGCACTCCCATCACACAGGAAGAAGTCAGCTCCATCAAGATGGTGGCAAAGTCTTCACCTTCAAATATGGTGGCTGGATCAGTCCCGCCACACAACAGACGGAGATGAGATCGCTGTCTGTGCAGATGGCAGCAACGTCTGGGTTTGTATGCTCCACACTCCGTTCAATAAGGCTGAGTATGTATGGCTGGTAAGAAAAAGGACTCTTGGTGTGCTGGAAGGAGGTGGAGGACAGCACGGCAAAGATCACCTGGTATTCACTATTGGCTCATTCACAAACACTAACCATTGGTTTGGGTTAAGGTGTATGATATCAAGTTTATGGTAATTACTTAAATTCCATCCACATCATGATAGTGTGTCTGAAATTGTGATATAAAATTAAGGGTGCCAGTATTAACCCCCTCATTTTTAAAAGAATGATGAAGCCAAACTGTCAAATTATACAGGTGCAGATACACAAATTCAGGTTTAAAAGGTAACTGTCCTCAATTGAAAATTGTCATTCTGCCACAAAACATTAGTTTAGGACATTAATGTTGACGGCTAAAGCATACAAGACTCTGCTTATCAAATGTTTGTCTGTAATCAAATAATCTGCTTATTTATTTAAAGCTAAGAAATCATGTGATATTTTTAAAACCCCATTGCAGACATTTTGGTTTTCAGTAAAGGCAGGTGAGAGTGAAGGATTGTAGAGTAGTTATTTTGGGGTCCTATCCAGCAGTTATACATTAGGCTACATCCCTGTGTATACTCTTGATAAGATCTGATGCGAGGAGACTAGTGTGGAGAGTTAATTGTAAATCAACATAATTGTCAATACATAAATAGAACCTAGAAATGGAACATGGGTTGGTGATATCAGTTGGTGATATCAGTTGATCTAAAACCCCTTGTTTTCAGGCATGACCTTGAAGAGTATTAACTTGATTCACATCAAAGCTCGAGGTATTTTAGTGAGTTCAGTTCCATTGCGGAgatatcaaatgtatttgtcacatgcactgaatacaaccgGTTCAGACTGAAATGCTTCCCtgcgagccctttcccaacaatgcagagttaaaaagaaaAATTATATAAATTCAAAAAGGATttggtaacacaataaaataactaaCGAGGCTATACACAAGATAGGACTCAACTTTCAGGATGACCAGAAGTCTGTGCTGTAACAAATGTCCTGTGTGCTCATCTATAGAGTCTGTGTCAGTATCTAATGTACATTGTTATGGATTCAGTTGGCCTTGTTATGGATTCAGTTGACATTGTAATGGATTCAGTTGGCCTTTATTCATTGGACATTTTGATATGTTTTATGTTTACCAGGGCAAGTGTAATTTTGACAAACGTATATGGTGAATGAGAAGCTGAAGCATTTTAGATATGGGTaataaaaaatgtgttcttaagaCAATTGATGTGAAAATGTAAATTATAGTTACAAATCTAAAGTTGGATGATTTGGAATACATTGCCTGTTTTTGATATTGCCGTGGATTTAAATGGGGAATTGATAGTAACTGCTTTTTGTAGTGCAAACACTTGCGTGGTTTCTACACTATATTTTTGACCGCTCATTCAATAAGTGTGCAGTGCAGGTTTATACTTTGGGCTTTTACAGGGATTGAAAATGGGATATTTGCTGTATAAACCAAATATTTTTCTTGCCAAATTTCCCTTAGATATGAACACTTGGTTGACCACTTTCATTTCTTACTCATTTTTTTAAATGCTCATCTTTTGTAAACCATTTTTGTTTTTAGATTTGATTTACTGCATGTCTGTGTCATCTCAACCTTTCTGGCTTTCTGTACTCATGAACCTCTtgcagtggtattcaaagtcaGCATCGCGACCCATGAGGGAAATGCAAAAACATTCATAGGTCatattgtatgggacaatataGAAACGATTTTGAAAAGGATAATTTGAAAAATCCATTTTTATTGagcaaatgtatttattggtttaTTTTCATTTCGATGAGATGAACATGTAATGAATTGaaggtacattttttttaaagggtgTCAGTAGGTTTGGAAATTCTGCTGGCCAAAAAAATAGTTCCCCAGAAATTCTGGTGGAAAATAATGGTGTCCCCACTGAAAAAGTTTGAATATCACTGCCTTAGAGATAAGTAATGTACTAAAACCCCCACACAACATCCTGATGGCAAGAGAAAGGTTTGGTTGAAGGCACTGCACTCCCATCAGCCAAGAAACAAACTGTTACGGTTTGTGTTGCTCAAGTCTCCCGTTTGTCAATTTCTTTGGAAGTAGTTTGTCAAGGAGCAAACCCAGACCTGTTTCAGATTAACAGTGGTTTGGCTGGTGTGAGTCAGTGTTTTGATATGGGAACATATCAATATGGTACCGTCATTATGTTATTAATATTCTTAATGATTGGATTGAGagcctgtgagagagagatatatatatatatatatatatatatatatattatcgaCTGCAGGATCCGTTTCAATATGAATGTCTGGATGAGTAATCAGTCGTCTCAGCAACTCGTCTACCCATTTATAGATCCCTTTGTTTCATTTGACTGGCACTATTTTGTGTGATATGTGCTCTCTTCGGTCATTAATTTCAGCAGTTGTACTCATGACTCAACTTGTCCCTTCTCTCATCTtcttattctctgtccctctttactTTGCCCCACTCCCGTCACCAGTCCTTTTCTCTTATTTTTCTTCTTGCAGTACTGCATTACAGGAGCAAAAGGAATGTGAAAagagagcacctcctcccagcctcCAGAAGCAagctggagagagggaaaagtgTGAGAAATGCAAGACTTGATACTGGCAACTCAAGTTCAAGCCATTTTGTCAATATGACCTGAAATGTTGCTGTGTCTTATCCATGGGAGCCTGACTTCAATTGTTTTAGTCAAGTCTTTTGAATGTATTTTATTTGACTATTCTTAACTTGAATCAAGAAAACATTCAATGTCACATTTTTTTCCACTCTAGTTTTCCAGAAACAATTTTGGAACACTGTTGCACGTTCTGTCTATAGTTAGGAAGGAAGGCCTATACCTCTAAACCATCATATGTGTTAATGTATACTGTTTGTCCAGAAACATTTGCATGTGTTCTTGTTTTTCATAACCAGGGTGTTCTCTAgaaattgctttgtcattatgtcaACTTCTCAAGTACAGATAAATATTTGGTATGGCAACCTTTTTTGGTCAGTGAATATTTGGCGTCTCTGTAACCTTGATGTATTTTTGTCAGCTGCCTcgtggtctacctgtaaattaatTTGCCTGCATTTGGTATTTGTCGTAATACAATGGGAGTTATTTTAACTTAGAAACCCATTAATTGGTATCTCTAGCATGTAAACTACTTTTCGGGATTTGAAATGGATCTGGACATACAGCACACAATTTCCATTATATCAAGGAAAACACATtctagatatttttttttcttatctgCTTATATTTGGTCACATTCCTTTTAAGTTTTGAGTagtccggtagtagttggctccCATATCAGAATGTTGCTCTGTCTTGCTCTGTACCTTTCCTAAACAGGATGCTTTTCTGTCTTGTCTCTATTGATTTCAGACACCTCTTCAACAGTGAAGTCAAGTTCATGTAGCGTGCTATCTCCTGGTCAGATGTTTAACATTGCAGAACCTCTCATCTCACATTGATGCTTTAGTTCTGATACATTCATATTTTTTGTTCAATAATGGTTTATAACTGTACATTTCCATTTAACTAACAATGCTTCTCCTTTTTAAAATGTGCTGCTCCTTCTTACTCTCTCAACTGTTCCTTCTGACACCTGTGggtttgtttttttccctctctgGAACTTCTTGAAGCCCATCACTGTGTAACTCCTGCCTCCATTTGTCCTATTAGACTGCACTTGAACAATTCCCTTTTACTTCAGCCTGATGCGCCGGTTCATTTTTAATTCTTCAATGTCTTTAGTGGATTTATTCTGTtgctccttttctctcctcactCTTCTTACCTGCATgtgtcccctcctcttcccttctaTCAGAATATCTCCTTTCTCCACCCTCTTCATGTTGAGTATCTGTTTGCTAGTGACTATTGTTGCTGAGTAACTATCCATTCTCGGTAGTAAGTATTGCTTCTACGCTGCTCAGGTGGTTTCTGTTGCAGCTAGCTGAAACTAAAGGATATACTTGCAAAATATCCCTCCCCAGTCTCAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137805 lncRNA downstream 212 18626958 ~ 18627700 (-) True G119458
TU137787 lncRNA downstream 25227 18602471 ~ 18602685 (-) True G119448
TU137786 lncRNA downstream 25563 18601933 ~ 18602349 (-) True G119447
TU137393 lncRNA downstream 27419 18600195 ~ 18600493 (-) True G119148
TU137381 lncRNA downstream 43847 18583862 ~ 18584065 (-) True G119137
TU137852 lncRNA upstream 51142 18684666 ~ 18684901 (-) True G119499
TU137859 lncRNA upstream 72977 18706501 ~ 18708609 (-) False LOC110536927
TU137858 lncRNA upstream 73294 18706818 ~ 18708609 (-) True LOC110536927
TU137889 lncRNA upstream 132060 18765584 ~ 18767871 (-) False G119532
TU137890 lncRNA upstream 132060 18765584 ~ 18767871 (-) False G119532
XM_021622480.2 mRNA downstream 22271 18603045 ~ 18605641 (-) True LOC110536796
XM_036940549.1 mRNA downstream 37560 18587019 ~ 18590352 (-) True LOC110536773
XM_021622444.2 mRNA downstream 41037 18564603 ~ 18586875 (-) False LOC110536757
XM_036940539.1 mRNA downstream 41037 18564603 ~ 18586875 (-) True LOC110536757
XM_021622438.2 mRNA downstream 41038 18564603 ~ 18586874 (-) False LOC110536757
XM_021622578.2 mRNA upstream 29080 18662604 ~ 18672410 (-) False grwd1
XM_036940626.1 mRNA upstream 29080 18662604 ~ 18672410 (-) True grwd1
XM_021622588.1 mRNA upstream 55424 18688948 ~ 18693820 (-) True LOC110536908
XM_036940648.1 mRNA upstream 62309 18695833 ~ 18708034 (-) False LOC110536927
XM_036940644.1 mRNA upstream 62309 18695833 ~ 18708631 (-) False LOC110536927
TU137371 other downstream 85415 18541052 ~ 18542497 (-) False LOC110536756
TU137320 other downstream 151159 18476454 ~ 18476753 (-) True G119087
TU137198 other downstream 194244 18427562 ~ 18433668 (-) False G119000
TU137031 other downstream 355805 18268548 ~ 18272107 (-) False khdc4
TU136972 other downstream 462799 18162309 ~ 18165113 (-) True LOC110534274
TU137801 other upstream 4357 18637881 ~ 18646663 (-) True LOC110534340
TU137868 other upstream 165976 18799500 ~ 18801387 (-) True G119512
TU138073 other upstream 414783 19048307 ~ 19049030 (-) True G119663
TU139386 other upstream 850813 19484337 ~ 19488232 (-) False cacng6b
TU139389 other upstream 852125 19485649 ~ 19488232 (-) False cacng6b

Expression Profile