RNA id: TCONS_00029689


Basic Information

Item Value
RNA id TCONS_00029689
length 465
lncRNA type intronic
GC content 0.35
exon number 1
gene id XLOC_013764
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 3297354 ~ 3297818 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gctttagcaaacagttggacaggtgtacccaataaagtggccgctgagtgtagtTTTGCATCTTTTCTGAACAATTGATTTGCTAATAAAAAATTTCATGGTCACATTCACACCACTTTTCACGTTGGCAGATATTAAAAAACAACtcttagtttttaaaaatgtttttcatgaTCTGCTATCTGAACTACAAAAAGACCGTTCTTTTATTTACATGATAAGGTTGACATGAATCTATAAAATCCATATATTCAAACACTGATTTATCCGAGTAAGACAATATGATTAAGGtgattacatgagttgctttttgaatgacCCTTTCATGGTCCCGTTTCACACGTTATAGTAGATCGATAAACATCATTGCATCACTGCGGCTGTCCAATGTTTCCGCCAGAGTTTCACTTAATTCCGGCTggttcatttttagttttttgactttaactgcagtttggcactttc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029850 lncRNA upstream 7245 3234380 ~ 3290109 (+) False XLOC_013763
TCONS_00029849 lncRNA upstream 47060 3234380 ~ 3250294 (+) False XLOC_013763
TCONS_00027547 lncRNA upstream 164423 3127912 ~ 3132931 (+) True XLOC_013762
TCONS_00027546 lncRNA upstream 232613 3060254 ~ 3064741 (+) True XLOC_013761
TCONS_00029688 lncRNA upstream 452103 2835249 ~ 2845251 (+) True XLOC_013757
TCONS_00027553 lncRNA downstream 276083 3573901 ~ 3578621 (+) True XLOC_013765
TCONS_00029852 lncRNA downstream 442747 3740565 ~ 3789221 (+) False XLOC_013768
TCONS_00029853 lncRNA downstream 442748 3740566 ~ 3780363 (+) True XLOC_013768
TCONS_00029854 lncRNA downstream 462358 3760176 ~ 3785528 (+) True XLOC_013769
TCONS_00029855 lncRNA downstream 462580 3760398 ~ 3763670 (+) True XLOC_013770
TCONS_00027551 mRNA upstream 62430 3213914 ~ 3234924 (+) False XLOC_013763
TCONS_00027550 mRNA upstream 64645 3206263 ~ 3232709 (+) False XLOC_013763
TCONS_00027552 mRNA upstream 64646 3215466 ~ 3232708 (+) False XLOC_013763
TCONS_00027549 mRNA upstream 75412 3140313 ~ 3221942 (+) False XLOC_013763
TCONS_00027545 mRNA upstream 215086 3056450 ~ 3082268 (+) False XLOC_013761
TCONS_00027554 mRNA downstream 356158 3653976 ~ 3707794 (+) True XLOC_013766
TCONS_00027555 mRNA downstream 428375 3726193 ~ 3737239 (+) True XLOC_013767
TCONS_00027556 mRNA downstream 528964 3826782 ~ 3843327 (+) False XLOC_013772
TCONS_00027557 mRNA downstream 543137 3840955 ~ 3843654 (+) False XLOC_013772
TCONS_00027558 mRNA downstream 545073 3842891 ~ 3846637 (+) True XLOC_013772
TCONS_00027548 other upstream 105758 3135271 ~ 3191596 (+) False XLOC_013763
TCONS_00027476 other upstream 2961613 335627 ~ 335741 (+) True XLOC_013712
TCONS_00027581 other downstream 1439758 4737576 ~ 4737664 (+) True XLOC_013782
TCONS_00027582 other downstream 1473101 4770919 ~ 4771035 (+) True XLOC_013783
TCONS_00027583 other downstream 1478474 4776292 ~ 4776413 (+) True XLOC_013784
TCONS_00027586 other downstream 1502770 4800588 ~ 4811536 (+) True XLOC_013785
TCONS_00027599 other downstream 1775107 5072925 ~ 5081858 (+) False XLOC_013791