RNA id: XM_036940631.1


Basic Information

Item Value
RNA id XM_036940631.1
length 3022
RNA type mRNA
GC content 0.47
exon number 6
gene id leng9
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18707635 ~ 18720399 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTACAAACATAACAAAGGTCAAAGTACACATTTACGGTAGCTTCAGACAGAATCTGTGATATATCTGTTCATAAGTCAGAGGGTGTACATTCAGGTTGATTGACTATGGCGTCAGAGGAGACAGGTGTGCCTTTGGACTCAGCTGAGAACCTGGAGGACAGAAGAGCACAGGAGCATAGAGCTACAGAGGGGCCAAAGACAGAGGTCCCAGCCAGTCCCAGCCAAGATGGACCTCAGGTGACGGCAGGCCAGGAGGAGGAAGCAGGTGTCTGTCAGTTCTTCCTGTTGGGAAAGTGTCGTTTTGGAAACGGGTGTCGTCGATCTCACAGcACTCCAACATTAGACGACCCAGAGGCTGTTATAGACCAGGAAAACAGgaaggagggagaaaaagagggaaaaCTCAAGAAGAAAGCAATAGGGAATAAAACAAACCAGCCAAAAGACACAGAGGGAAAAGGATCAACCAAGAAGCCCCGCATGCGTACAGCTGATGACGTCATCTCTCGGATCCTGTGGGACCCGTCGGTGGAGCCGGCGGACTTTGTGGTGGGGTACGTGGACCGCTTCCTTGGGGTGCTGGAGCGGCCCTTCTCTGAGTTCAACTGGGACACCGACCCCTGCGATTGTGACTACTCCTCTGAGCTAGCCCTGCCCAGACACAGGATTCAGTACTTCACCCATAGAGGGCGTAGAGTGTGGGACCGCAACAACAGGACTGACAGGGTGTTTGGATCCACTGGACAGTGTCTGGCGCCCCCCTTTGGACAGGAGGAGGAGCAAGAGCAGGGGACAGGGACACAAGATGTTGAACAACAAGACCCAAAAAACGACCACCGTGAATCAAGAGAAGAACAAGATGGAGTCATCACTacaggggagggagaagagagtgaCGAGTCCCTGATAAAACAGGATGTTGAAAACGGACACTTGGAGGAAAGAAATCAGAGCAAGACAAGTGTTCAGATGCCTGAGTCGACCAGACCAGGCACAGGAAGTACTTCACTGAACCAACAGGAAGCAGGAAGAGAATCAGAACCCTTGGAAGAGGAAGTTGGGAAGGATTCCGTTTTAGTCGTCATAGCAGACCAGATGTCTCTATcccagagagaaagcgagagcagGGGGGATGAAGGTGAGAAGGAGGAAGAATGGAAAGATTactgggatggagagaaaggcCCAGACCTAGCCCAGTGTCCATCTGTGCCTGtggagcagagaacagagaggggtggaggCCGGCCTTCCAAACGTAAGCCCACCCACTTCATCACCTTCCGGGCCAACACTCCTgccatcctctcctccttccagcaCCTTCAGGAGGAgctcacctccctcctcccctcatccgCCCCTCATTGGttgcccccctcctccctccacgtCACCCTGTGTCTCCTGGTCCTCCCCGGCCCAGCCGAGGTTACTGCCGCTGGGGAGATGCTCCAAAGCTTCGCCTACCTGGACCGCAACCCCCCTGTGGCCGTCTCCTTCCCCCTGAAACTGAAGCACTTTGGTGGGAAGGTTCTCTACCTGagcccccagcctcagccccaccTCCAGCAGCTAAATGCTGGCCTACAGGAGGCCTTCAGAGAGCAGGGCTGGCTGCACAGGGACTCCTTCAACCCACGCTACCATCTCACCCTGGCCAAGGTGAAGGACCGGGAGGAGGCGAGGGTGTTTGAGGGGGTGGGGGAGCTGAAAGTGGGTAAGGGGGTGAATTTTGGGCGACTGCCTATAAATAGGCTACACCTGTGTAGCATGGGGATGACTGGGGATGGGTTTTATGAGACACTGTGTGTGGTCAATCTCCGGTGAGAtgtaggtgtgtgtttgtttaggtATGGAGGTGCTATTTTACAAAGCACAGAACCCACATTTCCACACCCCACAGTCTCAATAATTTTAcatttaaaggtgcaatatgcagaaatcgctccgccatttcctggttgctgaaATTCAAGTTTGCCTAagttcagtttgtgacaaaacaagcaatcatTGCTGGTTttgtgtagagagtcattgtaccatctaaaccgccgtgaaatatcttttcaataaccaaaatattgtattttcagctttcTGAAGATGGTGTACAAAACCGGAAGTAAAAGACACAACaatgaaacttaagaacgggaagcatagaaatagcactcagaacagatctaccacttcttagacttctTAGATTTCAATgacaatgacagatctataactcacatttctatgtgaatttggtccgCTTCCTAAAAGTTTCGTATTGCAGCTTGAGAATTACTCCATTGATTAAAATATGAAATCCCAATGTTCCTGAAGTGCTACGGACCATGATGAAGTAGCTGTAATTGTAATGACTAATTTACTGGACCATGTTGTTTTAAGAAGAAAAATGCTATTGCAAACTCTTTGCAATAAGGAATTGAGACCAAAAGCTCAAGAGAAGTTTCAAGTGTTTATTACCAAGAGAATCCCCATCCATCTTCTGTTCTGGGCCTGACCCTGCTCTCTGATCCTAGGCAATTTCCTGTTATCTGATTAGGTCAACAACCTTTCTAAATGAGCATACACACAGTTTCATGGCCTGGACTCTATTAATACTCACAGTAATCATTCACTACACAGGATATAAACAAACTACAGTTTAACTTGAAACATGTTACATTTAAATAGAATCCATCAATGTCTATAGCTTTCACAGGGAGGAACACCCACATTACATTTAGCAGACTTTATTACtgatgtaataatgtaatgtattgaATATAATAATGGCTGAAATATTATCTTTCCATCATGGTAACTGCATCTCAACCAATCAACTCTTACTTTGTGGCTACAGAGATGATTTTATAATTGTAATATGAATATTTTAATATAATCCAACAGAAACCCACTGATCGCTGCTACGTTGATCATGTAAAATGTCTGCTTTTACAAAGAATTATGACCTTTTGGATTTGGATTGCCAAGGACATTAAATATTGAACTTGTAATTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137404 lncRNA upstream 45744 18662619 ~ 18663111 (+) True G119159
TU137294 lncRNA upstream 116040 18592511 ~ 18592815 (+) True G119076
TU137289 lncRNA upstream 122776 18585876 ~ 18586079 (+) True G119071
TU137284 lncRNA upstream 128443 18580204 ~ 18580412 (+) True G119066
TU137283 lncRNA upstream 129756 18578720 ~ 18579099 (+) True G119065
TU137484 lncRNA downstream 20295 18740694 ~ 18743720 (+) False G119222
TU137488 lncRNA downstream 20295 18740694 ~ 18744243 (+) True G119222
TU137427 lncRNA downstream 73304 18793703 ~ 18797176 (+) True LOC118938256
TU137510 lncRNA downstream 101489 18821888 ~ 18822563 (+) True G119241
TU137528 lncRNA downstream 214274 18934673 ~ 18952185 (+) False G119245
XM_021622568.2 mRNA upstream 51061 18652960 ~ 18657794 (+) True cdc42ep5
XM_021622537.2 mRNA upstream 87275 18606083 ~ 18621580 (+) False LOC110536807
XM_036940656.1 mRNA downstream 1016 18721415 ~ 18755200 (+) False ttyh1
XM_036940667.1 mRNA downstream 1018 18721417 ~ 18752689 (+) False ttyh1
XM_036940662.1 mRNA downstream 1018 18721417 ~ 18754197 (+) False ttyh1
XM_036940672.1 mRNA downstream 1019 18721418 ~ 18752689 (+) False ttyh1
XM_036940671.1 mRNA downstream 1019 18721418 ~ 18754197 (+) False ttyh1
TU137405 other upstream 36535 18670513 ~ 18672320 (+) True G119160
TU137398 other upstream 72814 18633839 ~ 18636041 (+) True G119153
TU137225 other upstream 231721 18476424 ~ 18477134 (+) False LOC110536658
TU137226 other upstream 232501 18457358 ~ 18476354 (+) False LOC110536658
TU135495 other upstream 1250833 17455765 ~ 17458022 (+) True G117735
TU137542 other downstream 238737 18959136 ~ 18961465 (+) False G119245
TU137673 other downstream 536187 19256586 ~ 19257494 (+) False LOC110503718
TU138223 other downstream 786252 19506651 ~ 19507338 (+) True G119794
TU138235 other downstream 805795 19526194 ~ 19527873 (+) False LOC110537095
TU138236 other downstream 805795 19526194 ~ 19528660 (+) True LOC110537095

Expression Profile