RNA id: XM_036940649.1


Basic Information

Item Value
RNA id XM_036940649.1
length 3312
RNA type mRNA
GC content 0.49
exon number 16
gene id ttyh1
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18721415 ~ 18755200 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCTGCCTAAATATATGTGCATCTCtacctctcccgctctcttcctctctgcacaACACAGCCAAACACTGCCCTGCCTAACCACACAGGAGATTTCTTCAACAAATATTTTGTGGATTTTTTGTACAGAAATCTGAAATGTAACTCAAACTCGAATAATTGGACCTTTTctcgttttgtatttttttaatttagaCAATCGTAGATTTTTTTTATGATGATTTGTTGATTTTGGTCAGATTTTTGCCTCCTAATCTGAGAGTGTAGAGAttgGATGAGTTTTTTTCCCAAGAGGATCCAGCAGTGATGGTTGGCAACGGTATACCTCAGTGAGTGTGTAGATATTTGACAGAACACCAGAGAAGAGCAAGAGATAGCAGAACACTCTCCCAACGCTACAGTCAAAGTTCCTTTCaacagggtggaggagggggggttaGGCGATAGAGTATGGCTGCCATGGCGACCGTGCCCAGCTACACCCCTTCGCTATGGGTGAGGATGTGCCACGCCCTCCCCCGGCTGGACCTCACCATGACGATGAGAGACAACCTATTCATCCCCGACAGCTGGGAGTACCAACAGACTCTACTGGTCCTCTCTAGTCTCTCGGCCATtgctctcgttctctccctcctcGTCATTATCTCCTTCCTTATACACTACTGCTGCTGTCGCCGTGGTGACCGGAGCGAGGgatctgaggaagaggaggaggatgaagacggCAGCACTGGCCATGGATACGGAGGCAAGAAAGGGCGGGGTATCTGCTGCGTCACCTGGGTGTCGGTGGCGGCTGTCACACTGTGCTGTGTTGCCATAGGCGTTGGTTTCTATGGCAACAGCGAGGCTAATGATGGGATATATCAGTTGACCTCATCTCTTCTCACAGCTAATTACACACTGGCTTCCATCGATCTGCTGGTTTCAGACACAATTTCTGGGCTACAGCTGTCCATCGCTGGGCCCCTGACCACTATGGAGGAGCTGTTTACAGGCAGTAAGCCCTACTTGGTGTCCACCCGGAACTGTAGGAGACTGTCAGAGAACGTGGTGTCCCTGCTCACCTCGCTGACCATGGCTCGCTCCTCTGACGGGGGTGGCTGGAACAGCAGTAACAATAGGGGAGATCCTCCCATAGCAGCCCTCACCCCTGTGCCCCCCTCCATGGCCCCCACAGTGGCACCAGTCGGAGGGGTCATGCCAAGCCCCTTCTCCCCTGGCTGGGCAGCCAACACACTGATGGTCAACGAGGACTACAGATGGCTGTCCTAcgtgctgctgttgctgttggaCCTCCTAGTGTGTCTGTTCATCCTGCTGGGGCTAGCCAAACAGGCCCGCTGGCTCCTCATcctGATGACGGTGCTGGCCTGGCTGGCTCTGTTCCTGAGCTGGGGATCCCTGGGCCTGGAGACTGCCACTGTGGTGTCTGTCAGTGACTTCTGTACAGATCCTAACACCTTTGTGCTCAACTCCACCCACTTCAACTCTGGGACCAGCTCAGACGTGTTGGATTATTACCTGACCTGCAGCAGACGTATGAACAGCCCTTTCCAGCAGCTGCTGACCCAGTCACAGAGGTCCCTTTCCAGCATCCACACACACCTATCCAGCCTGGACCGGAATGCTCTCCCACAGGTCCCCAAGGCAGAGAAGTCACTCAGGGAGGTTCAGCAGATTCTCAATGCCACAGAGGGCAACTTTCACCAGCTGGTGGCGCTACTCCACTGTCGAGGTCTCAACAAGGATTATATTGACTCTTTGAAAGGCCTGTGCtctgatgggatggagggattgctctacctctctctctactctttcctTTCGGCTCTGGCCTTCACTGCCATCCTCTGTTCCCTGCCCGGCGCCTGGAGAAGCTtccccagTGATTCCGAGGAGTATGAAGATTCGGACAGCGAGAGCGAGGACCCCTTCACTTCCCATCAGGCACGTAGACAGCCGGCCGTGGGGTCTCAGCGAGGGGCCTTGCCCCCCTTCTATAATTACCAGGGGGCCGAGTGGACTCCTCCATTTTCTAGCGCGCCACCCCTCCCGACTCCAAACGTTTCCTCCAATGGCAACCCTGGCTATGAGAGCCTACCCCTGACTGACAGGCAGTCCCCACCCCCCTCTTACTCTCCCAGCATGCTGACTGGTTACGGGGGTAGTCAAACACACCCCAACTCCGCCCATTCAAGGAACCTGTATTCACGctaatttttttttatgtttaaaaaaGTATAGAATTTTTTTCTGTTTTCTTATGAATGGACACTTTATTGAGATGAAGAATAAATAACTAATCCCCAAAAATCGAGCTTTAGATGTAAATTAAAGGTGCGTAACGTCAGTATCAACAAGGTTGAATGGCCTGCTGTAGAACCTCACAGTAAGCTAATGTcaaatagatacagtaggtagCATGATTATGAAGAGGTCTGAACCAGGTTCACTTGGTCAAAGTCACCCCTTACAATCCCCCTTGTCTGTCCAGTGTCAACAGTTGCGCGGCGAGCCAAAATGGTATTGACGTTACAACATTGTAGttctatattttttaaatgtagcaCCAGTTTATTTTCACGTTTTTATATCTATATCTTGTTGTAGAGAAACACTGACACGTAGAAACAAGACACATTTTTGAGTGAATGAATATGCAGTCTCCTCACTTGGTATTCAACGTgcaatttttatttgatttacttttTATAAGTGAAAATTCTGTATCTCCTTTGTATTACCTTCTGATACTATACATTTCACTGTTGATGACATTATCtaaatcagggatgggcaactcctgTCCTTGGGGCCGGAGTGGTGAataaactaattgcattctaaactgaagatcatgattaggcgATTATTGGAGTCAGCTGCAGAAGGGACACCAAGTCcccaaggactggagttgcccatcccctCATGAAACTTTGCTCTTAAAAATAACATTCAAGAGAGGGCTATAGTACCACCTCTTTGTAGGCTGAATTGAGAACTACAACTCCCATCCAACCACGAGACCGTTAGAACTACAAATCCCATGCAATGACAGCAGGCACATAGCAATAAAACTCCTGCCACTGGTGCTGCAGTAGCTCTACCGTAAATAGCAATAATAACTATATAGCAGTGGGTTTCTGGGGTCTCTATAGGATGTTATGTACATATGTGATGTCAGATTTCATTGAACACCCTCCTTGTCTGACCTTGTTAACCCTTGAATTGCGTTTGTATGGTATAATCAATGCTCCTTTTGAATGGCATCCTTTTTCACTCCAGAGtctaatataaataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137404 lncRNA upstream 58307 18662619 ~ 18663111 (+) True G119159
TU137294 lncRNA upstream 128603 18592511 ~ 18592815 (+) True G119076
TU137289 lncRNA upstream 135339 18585876 ~ 18586079 (+) True G119071
TU137284 lncRNA upstream 141006 18580204 ~ 18580412 (+) True G119066
TU137283 lncRNA upstream 142319 18578720 ~ 18579099 (+) True G119065
TU137427 lncRNA downstream 38503 18793703 ~ 18797176 (+) True LOC118938256
TU137510 lncRNA downstream 66688 18821888 ~ 18822563 (+) True G119241
TU137528 lncRNA downstream 179473 18934673 ~ 18952185 (+) False G119245
TU137522 lncRNA downstream 181309 18936509 ~ 18952185 (+) False G119245
TU137529 lncRNA downstream 182910 18938110 ~ 18939247 (+) False G119245
XM_036940638.1 mRNA upstream 1019 18707635 ~ 18720399 (+) False leng9
XM_036940631.1 mRNA upstream 1019 18708855 ~ 18720399 (+) True leng9
XM_021622568.2 mRNA upstream 63624 18652960 ~ 18657794 (+) True cdc42ep5
XM_036940598.1 mRNA upstream 99838 18610956 ~ 18621580 (+) False LOC110536807
XM_021622663.2 mRNA downstream 5643 18760843 ~ 18767906 (+) True ube2s
XM_036940709.1 mRNA downstream 18092 18773292 ~ 18797176 (+) False LOC118938256
XM_036940705.1 mRNA downstream 18094 18773294 ~ 18797176 (+) False LOC118938256
XM_021619150.2 mRNA downstream 42573 18797773 ~ 18806085 (+) False si:dkeyp-69b9.6
XM_036940687.1 mRNA downstream 42575 18797775 ~ 18806085 (+) False si:dkeyp-69b9.6
TU137405 other upstream 49098 18670513 ~ 18672320 (+) True G119160
TU137398 other upstream 85377 18633839 ~ 18636041 (+) True G119153
TU137225 other upstream 244284 18476424 ~ 18477134 (+) False LOC110536658
TU137226 other upstream 245064 18457358 ~ 18476354 (+) False LOC110536658
TU135495 other upstream 1263396 17455765 ~ 17458022 (+) True G117735
TU137542 other downstream 203936 18959136 ~ 18961465 (+) False G119245
TU137673 other downstream 501386 19256586 ~ 19257494 (+) False LOC110503718
TU138223 other downstream 751451 19506651 ~ 19507338 (+) True G119794
TU138235 other downstream 770994 19526194 ~ 19527873 (+) False LOC110537095
TU138236 other downstream 770994 19526194 ~ 19528660 (+) True LOC110537095

Expression Profile