RNA id: XM_021622695.2


Basic Information

Item Value
RNA id XM_021622695.2
length 4705
RNA type mRNA
GC content 0.46
exon number 5
gene id dbpb
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18809356 ~ 18818700 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTATTACAGCTATTCTGCTTTTAGGAAGCAACGTGCTGCTGTGTTCCTTTCGCCTGAAAACCCGGCAGCCACTCACGTTTTCTCTGGATTACAAGCGGACTGGGAAAACTGTAGTCTACACTCAGTTGCTTGCTCATAGAATGGCGCAAGGCCCATTGCCATTATAATGAAATAATCACATTGGCATTCTATTTGGGCAATAATCTGTATGCCTAGATTAACGTTCTATAGAGGATATGTTTTAAAGACGTTCATTCAAAGTCATGATGATAACGGTGGCGGGTGATTGCTAACTGTCCATTTGTTGTCCGTCTGTCCATGAGCATACAAACAACAAGTGCTTGGCGTGCCCCCTCGAGGTGTGGCACGAGGGGGGTTGTGTGTTTGTCATGCATATTGAACAAATAAGCCAATCATGCTTTCTCTCGCGCCTTGCCCTATGAGTTGTGACGTCACGTGAACTGCCCGTGTTCGTTCCAGCTGAGAGGACAGCCGTCGCGCAGCCCAAATCCAAGCCCGTGCTTCAGTACGTTGGCTACACAAAGTACGCGGGTGAAAAGAAGACCCCCCCTCCCGAAAGAACGATAGAGCGACAGGAAAGCTTAAAGAAAAAAGTAATACAGCTTGTCACCCGACAAATAGTGCGCGTACTCAGAGCCTTCTCCGCTTTTCGCTCTTCATTATTTGTTCATTTGGCATTGTGGACTAGGACATTCTTTTTCCTTGCTTCGAGTTTCATTTTGATCATATTTGAATCGTCATTTTTTGGGGTGTTGATCAACTCAGGATATTTTTCGACAACAATTTATTGATCTCCAGCTCGGATTTTATTTTGTCCACCTTTGAATTGACCATGGGCACCAGTCATTAGTTTGACGTTTTACAACTGGTCTCTATTGGAGAATAACATCTTGATCTGCACCGGGGATTTAAAATAATATAGTGTTGCACCATATCTACTGGAATACGGTCTATTATAATGATACAACAGTGGATATAAGAACACTTCATAGCCTAAATAGAGGGAAAGCGGTGATCAATCTGCCAGTCATTTCGACTCCGCCTGCGCCCCAGGATCCTAATCAACAACCAGGTCCGGCCAACTATGTCCAGGCAGCTCACCCAGCTCCTGACCCCGGACCTCCCAGCCGGCGCTAGCCCGCAGTTCGGGAATTGCAACCAGTCTGGTGGCTCCATCAGCGGTGGACACCTCAACTCCATGGCTAGTTTgaaatccctcctgcagcatccGATGAAGGGAGACCGTGCAATTCTCAAAGACTGCTGCGACGTTAAAGACAAAGACAGAACCATCACAGACATGGATGAGGACTCCTTGGGTGGCGGGAACGGCGGCTGCAACATGCGTAGCGGCAGCAGCGGGgtgagcagcagcaacagtaacgTCAGcggaggaggagctggaggattTAACCAGTCTGCGTTCCTGGGACCCCTCCTGTGGGAGAGGACCCTGCCAGTGGAAGGAGGCCTCTTCCAGCTGCAGTACATGGACCTGGAGGAATTCCTCACAGAGAACGGCATGGGCGGAGTCCACGGCCAGAACAGTTCCAGTACAGCCCAGATCCCATCCCAGAGTTCCCAGTCGGCGGTGCCCAATCAGAGTTCCCAGTGTCCCCCCTCATCGCCCCCACCCTGCTCTTCAGcctcctcctcgtcatcctcaTCTTCCCCGTCGCTCATCGGCCTGGAGGTGGCCCAGTCCAACATGCAGGGAGGACTTGACTATGGAGGCAGTCAATCGAGCATGAACGACGACTGCGGCTCGCCtggttcctctgtctcctcttcgTCCTGCACTCCTCTCATGACGCCCACATCCAACGGTCCAGATGTGATGGGTGGCTTTGAACCCGACGCGGCCGACGTGGCTCTGTCCAGCGTGCCCGGCCAGGACGCCTTCGACCCCCGCAGACACCGCTTCAGCGAGGACGAACTCAAACCACAGCCCATGATCAAGAAGGCCCGCAAGATGCTGGTGCCAGCAGACCTCAAGGTTGGTAGTCAGAGAGATGATAAGTACTGGTCCCGGCGGTGTAAGAACAACGAGGCAGCCAAGCGTTCTCGTGACGCGCGGCGCTTGAAGGAAAACCAAATCTCTGTCCGCGCCGCCttcctggagagagagaaccaggcaCTCAGACAGGAAGTGGCTGACATGAGGAAGGAGCTCGGTCGCTGCCGCAACATTCTCAACAAATATGAGAATCGCCATGGAGACcagtgaagaagaggaggagaaagagaagaaactgATGGGTGGAATGGGGTGACATGATGATGaaaacgatgatgatgatgatgaatgtatGAGACGATGACAAGGGTGATATAAAGAAGCTCAGGTGTCACATTTTGATGATGTCAGAGTGGgcagggttaaaggttagggacAGAGAGATTACATAATCCGGAGGACTGTTGCCCCTTTAGACGAAAGAAGAGAAGACGTGACTTTGAGGATTTTGATATCGGAGAATTGTATATTTTTATATTAAGACTAGAGGGGGAGCAAATTTTGGAAATCATTTTTGTATATTTTCTATATGAATGGGAAAGATGTAAGATATAGAGAAATGGAGGGCTATGACAAAATATCTTTTTAAAGTAAATTGATAAAGGAGATGCTATTTTAGAGGTGTTAGACAGGGATTTTTAGACAGGATTCAGAGTCAGGGACTAGGAGGCAAGGTGGCCATTTTAAACTGTAAAATAGAGAGCAAAATGATTTTAAAATTGTACAGTTCaacatttctttgtggattttacTCAAGCACTTAATTTGTTTTCTTTGTTGTGTTTCTAACTGATGGGGTTTGGGCTGAAATGGTaggaaagtgaaagagagagagagcgagagagaaatgggagaaacACTATTAACCCAGCACAATCTTCAGCACTTGTCCAGTGTTTGTAAATAACAAGTCCTTCATATTGTTACAACTTTTGCAACCTTTAACAGTTTGGACTGTTTAGTAGTTGTCTAGATGTCTGGGCTTTGGTGCAACAGCTCTTACAGCTGCACTATCTCCTCTGTCATATAGAGAATTGTATTATGTGACCCCAAGACTAGCAGGGCATTCAATCACACTACAGCTAATGGATGGGGCGACTGTTAGTTTTTATTATGTATACTATGAACTCATATTGATGAGCCCttggccatctctctctctcgctctctttctgtcacttTTTGTCCTTTTAGATTGCTGTCAGTTCTAACTGATATAGAATATCTTGCCCAAGCTGGGTTGGTAGGATTTTTTAGTTGTTCTGGTTACAGTGGACCGTTTTGATCTTCTCTCTGCATTGTGATGTTTTTTTCCTTCCTATGTTTTTTATATCGAATTGATCCAATCCCAACAAGGTTAATGTCGCTTACAACCAATCACGAAAAGGCTACTTTTACCTTTAACCAATCCTAACAACCGGTCTCTGTGGTTCTAGATTGTATACATAATACCACAATGTCTTCACACCCTCCTAAATAGTCCACCAACTACCCAGGAAAAAGCACACTTGTGTTATTGTACTATATTCATGATTTTAGATAGCATTCTTATTATTGGTAGAAGATAAatattgtctatattgaatatacCAGTTTGTGTATTTTACATAGGTATATGCTAAGTGTGAATGTTGCAGAGATGAGATGCGTGTATGATTGCGTATATGCAAATGTATTCCAGGAGATGGGGTTTGTGGTAGGGTGTCATATCAAATGTGACCCTATTCTCCCATATACCCAGGGAATAGGTTATCATTCGAGATGATGCTATTATTACTCTCCCCATCGATCGGAATGGTGTTAAATTCTCAGATTTCTGGGACTAATAAAAAAGCCAAAATTTTAAATGTTGACTTATTAAGGTTGCTGATACTTTCTGTCAGTTCTCCGGCATTTCTGTGTTGTTGAGCATCGTCTTAGTATCCACATAGTGTCGTGTTTCCCTACCGACTCACTAAACCCAGGGGAGAGAAAGGGCCCAGTCAACCCAGTCATAGTGCTTCTTTTCCTCAACGACCATGTTATAAATAACTACCATTACTATTATAATGATTATTGTTACCCCCCTTTATTGTTGCTGTTATATATAATTGAATGATTTTATTTCTTTGGATGAACATGATTTGTTTTGTATTGAAGCATCTTTGATCTCAAGCTATCCTCACAGAGAGACTATTCAGACATGCATCCCGGTTTTTATGTCACTTCCTGCCCTGCACCATGTACATCCTGTTTTGGTCCGTCGAGGGCCGCTGGTTTGTTCATAACCCCTACGGACAGTTTCTATCCGGACTTCTCTGAAACACAGTTCCCAGAGGATGGCGGCCATCTTGGTTTCTCTGTTGATCATGGATTCCACAATCTCGCTGGCTCATCTCACGTCTGTTCAGTTCTCTAGTTGTGTATGGACTATGCACGCTAGCCACAGTTTTCCTCTTGGTTTTCTGCAGCCTATTTTCACCTCAGTGACTGTATGTATGCTCTCCCAACTGGATGTTGTTCCTGATCTCCCTGACGTGGATGATGATAACTCTTATAGTGACTTTTCTTGAACTACAGCTACCCATCTGCACCGGTGGTGTCCACTGTTCCAGCCCACTCAGTGCTGGCAATGGGGATGTCGTTGAACTTTCCCGAAAACACAAATAAAAGATTGTTCTTACTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137427 lncRNA upstream 12180 18793703 ~ 18797176 (+) True LOC118938256
TU137488 lncRNA upstream 65113 18740694 ~ 18744243 (+) True G119222
TU137484 lncRNA upstream 65636 18740694 ~ 18743720 (+) False G119222
TU137404 lncRNA upstream 146245 18662619 ~ 18663111 (+) True G119159
TU137294 lncRNA upstream 216541 18592511 ~ 18592815 (+) True G119076
TU137510 lncRNA downstream 3188 18821888 ~ 18822563 (+) True G119241
TU137528 lncRNA downstream 115973 18934673 ~ 18952185 (+) False G119245
TU137522 lncRNA downstream 117809 18936509 ~ 18952185 (+) False G119245
TU137529 lncRNA downstream 119410 18938110 ~ 18939247 (+) False G119245
TU137540 lncRNA downstream 155076 18973776 ~ 18992769 (+) True G119245
XM_021619150.2 mRNA upstream 3271 18797773 ~ 18806085 (+) False si:dkeyp-69b9.6
XM_036940687.1 mRNA upstream 3271 18797775 ~ 18806085 (+) False si:dkeyp-69b9.6
XM_036940689.1 mRNA upstream 3271 18797775 ~ 18806085 (+) False si:dkeyp-69b9.6
XM_036940693.1 mRNA upstream 3271 18797775 ~ 18806085 (+) False si:dkeyp-69b9.6
XM_036940698.1 mRNA upstream 3271 18797775 ~ 18806085 (+) True si:dkeyp-69b9.6
XM_021622715.2 mRNA downstream 4631 18823331 ~ 18843970 (+) False ntd5
XM_021622724.2 mRNA downstream 9971 18828671 ~ 18843970 (+) True ntd5
XM_036940740.1 mRNA downstream 25699 18844399 ~ 18852800 (+) False LOC110534353
XM_036940736.1 mRNA downstream 26051 18844751 ~ 18852800 (+) True LOC110534353
XM_036940756.1 mRNA downstream 54784 18873484 ~ 18930557 (+) False si:dkeyp-69b9.3
TU137405 other upstream 137036 18670513 ~ 18672320 (+) True G119160
TU137398 other upstream 173315 18633839 ~ 18636041 (+) True G119153
TU137225 other upstream 332222 18476424 ~ 18477134 (+) False LOC110536658
TU137226 other upstream 333002 18457358 ~ 18476354 (+) False LOC110536658
TU135495 other upstream 1351334 17455765 ~ 17458022 (+) True G117735
TU137542 other downstream 140436 18959136 ~ 18961465 (+) False G119245
TU137673 other downstream 437886 19256586 ~ 19257494 (+) False LOC110503718
TU138223 other downstream 687951 19506651 ~ 19507338 (+) True G119794
TU138235 other downstream 707494 19526194 ~ 19527873 (+) False LOC110537095
TU138236 other downstream 707494 19526194 ~ 19528660 (+) True LOC110537095

Expression Profile