RNA id: XM_036940740.1


Basic Information

Item Value
RNA id XM_036940740.1
length 3733
RNA type mRNA
GC content 0.51
exon number 3
gene id LOC110534353
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18844399 ~ 18852800 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctctctctgctcGTGCAGCAGGCTGCGCGCAGAATCTCCACTCCTAACTAGTCCGCCTCTCATTCATATTTGGTCCTCCGGAAGTATCCACAGCTCGGATTCAGGCATGTTCCAAAATGGATTCTCAACAGACAGGGGCTCTGACCAATGGTGGCTCAGATGACAGGAGTGTCGGCCAATCCTTGAAGAGACTGGGGACTGTGCCAGAGATCCATGAGGAGCCAGTGGACTCCTTGATCTTATCCTGCCCACCAGGTAACCTCCAATAATGCTCCCTTAAACAGGTGTACTCCAGTACAGGTTTCCAATCATAACCTTTTTAGGCCAAACGAGGAGGGGCTGGGAGAGCGCCAGATGTGAGCGGGACACAGCCAGCATTACAGGAAGCAGTTGAACCCTGCGGGCtcaaccaaccaatcacagtCTCCTGGTGTGTGCGATCAACCAATCAGAGTCAAATCAGACGTTCCTGGATTGTGCAACAGGCCAATCACAGACTCTGCAGCTCTCAGCTCTACCAAAGACGTGTCTCCCTCTGATTCTAAAGGGAGTACGTTAGAAGCCAGAGCTGTTTGGTCTGGGACCAGTTGAAATGCCCTGACCTCCACTACTGTGACTGGTACGGGTCAGATGGAGGATGTGTGTGTTGAAGAGATAAAACACACGGAGGAGCCTCTCTATAGgatggagacagaagagagggatgagaggagagatggagagagtgatgtTACACAACACAGGAATGGTAGTCCTATTGTCCCTGAAACGCCTCTCATCTCTGACACAGCcaagacagagagggatggagggataaggggagagaaagaaaggaaagatagagaggatgagagagtgaTCCCTCTTTTCCTACCCCCTAGTCGATGTCATGGTGGAAAAGAGAGAccgggagaggatagaggagagagagcagaggcagGGAAAGGAGtttgggggagaagagaggaagaggagggagaagtatTGGATCTGAGCTTCCCTAAAAAGAGAGAGATTAAAGAGAGGAGCCTTTGGCATGAGAGCTCACTGCTTATGGAGGTAGATGAGGTAGAGGGGGATGGAGATAGGGACATAGTAGAGGAAGATGATGGCGATGATGAAGAGGATTCTATATTGAGAATGGATGGAGCTGACATTTTGGGGGGACCTCTCTTGTCTCCCTTGTTTTTCTCTACCTCCGttttcacctccctctcttccatagACTCTGAAAGTGAAGGTCTTCTCCTGATAGATGACCAGGGTATTCCATACAcactcacccctgaggggcacAAAGTTCCCCAAATGGACTCTTCCAGGCCAGACAACCCCCCCTCAAGCCAGCCAAAGGTGCAGTCCAGCACATTGGAGGTAGAGGATGACAGGTtgtctcatataaccacagcagGGGTCACTTACCTCAGCCAAAGTTTAGTAaaaactccacacacacacaaggaaaaCACATGTCCCGCTCCTGTTACATCTATGAAACCCTCACAGAAGTCAGAACTTCTAAACAATACAGAACACTCAAAGAACCCAGAACTCTCACAGAATGCGGAACCCCCTAAGGTTTTAGATTCAGGTGTGAAATCTGTTAGTGAGGCTAGTGCTGCTGTTTCCCAACCCTCTGGTTCTGCTGTACACCTCCAACCCCCTCAGCCCATCCAGATCCTGACTAACCCCTCCTCCAACacccccatcctcctcttctcctcctccccccagcaCTCCTCCATTCCCCTAACCAAGACTGATACCAACCCAGGCCTCCtggccttctctctccccctctccctcacccaaAACACTCCCAGTGCCTCCACCTCTAtgttccttctcctctcctcctccaccacctcttccTTTGGTCAGtctttctctacctccacccccatTGCTCTTATTGACCGCTCCACCGGTCAGCTCTCCCAAATCACTGCCTCCTCTtcatcccctctttctctctctctctcttctggtcAGCTTGCCACATCAGGGTCATCCCTCCCTGCCAATCCCTCCCACCCAGTTAATATATCGACACCCAACAACTCCCCTACCATCCTATCAAGAGAGAGTCCCATCGTTAACCCTCCCGCCCCCCTGACCTCCCCCTCTGtggtctcctcccctccctccaagCAGACCAGTGCTGATGGCAGTTCTAAAGCAGTTCTACTCAGCTCACCTCCTCACAAACACACTGAACCAAACTGTTGTGACCCCAACACCGATAATCAGTCACTATCTACTGAAGAAACCCAAATGGAGTCTGTCCCAAATGGGTCATCTCCTACTAAAACCTCTCCCCTTACACACCTGCAATCACCTTCTCTGTCCTTTGACTTCCGTTTGGAGGCATCCGACCAATCAAAAGCCCCAGAGTCAAAGCACACCTCCCTCCCATGGGACGACCATCTCTACTTCTCCTCTGCCAccgctcctccctcccctccccttgccCCCATCTTCCCCTCCAGCGGACCCAGGAACCTGAACCCCCTGGACCCTCTGGACCCCCTTTCcccagcctcctctccctcctctgggCCACGAAGGGTCCTCTACTGCCCTCTCTGCCCCAGGATCTTCTACTACCTGTCTGACCTGGAGCGTCACTCCATCACCCACTCTCAGAACAAACCCCATGTCTGCCTGCAGTGTGGCAAGGCCTTCAAACGCTCCAGCCATTTGCAGAGACACAAGCACATTCACACGGGCGAGAGGAACTTTGTGTGCCCCATCTGCTCCAAGCGTTTCAGGGAGGCGGGCGAGCTGCAGCGCCATCAGAgggtacacacaggagagaagccctacCAGTGCCCGCTGTGCCACACACGCTTCGCCGAGCGCAACACCCTGCGTCGACACACCAGACGCAAACACCCTTACCACCAGGCAGCTATGGAGATGCTGTccgagagaggagcagggggaggaggaagagaaggcggGGATGGAGATGAGGGCACAGAAGAATGGTATAGTTCCACTGTGTCCAACTTGGACAACTCTGACTCTGAACCAGATTCTGAGGTCATTTCCTGAGGCTGATCCTCTTGAAtaaaggaaaggagaagaggagaagaggagaaggaggaggagaagaaggaggaggaggaagaggagaaggaggaggaggaagaggagaaggaggaggaggtagagaaggcgaaggaggaggaagaggagaaggagaaggagagcaaAGATGGTGTAGTTTCACTGTGTTCGACTTGGACAACTCTTGACACTGAAAGGGATTGAAAATGACTTTTGAATGATAAGTATCAGAACGGTACTTTCCAATGAGAACATtggttatatttatttattaatttctcTTGAATGTATTTTATTTCCATTTCCTTACAGGGTCTGAAATGATCACTGATCTCATAAACCATTTCCCATCAAGTATTCCTTCGATTTTCGTCATTTCCACAACTATAGGGCGGAAAATGTTAATGGACATTCTAAAAAATGTCCATCCTGCTATAACAATACTTTTGCACTACCAAAGTACAAACAATTATGTTGTAAAAAGCGCTGTCGCAATGTTTTATTGTAAAATTGTTCTTTtttcttttacccctttttttcgtggtatccaattgtttttagtagctactatcttgtctcatcgctacaactcccgtacgggctcgaaAGAGACGAAgattgaaagtcatgcgtcctccaatacacaacccaaccaagccg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137510 lncRNA upstream 21836 18821888 ~ 18822563 (+) True G119241
TU137427 lncRNA upstream 47223 18793703 ~ 18797176 (+) True LOC118938256
TU137488 lncRNA upstream 100156 18740694 ~ 18744243 (+) True G119222
TU137484 lncRNA upstream 100679 18740694 ~ 18743720 (+) False G119222
TU137404 lncRNA upstream 181288 18662619 ~ 18663111 (+) True G119159
TU137528 lncRNA downstream 81873 18934673 ~ 18952185 (+) False G119245
TU137522 lncRNA downstream 83709 18936509 ~ 18952185 (+) False G119245
TU137529 lncRNA downstream 85310 18938110 ~ 18939247 (+) False G119245
TU137540 lncRNA downstream 120976 18973776 ~ 18992769 (+) True G119245
TU137651 lncRNA downstream 200008 19052808 ~ 19057561 (+) True G119330
XM_021622715.2 mRNA upstream 429 18823331 ~ 18843970 (+) False ntd5
XM_021622724.2 mRNA upstream 429 18828671 ~ 18843970 (+) True ntd5
XM_021622695.2 mRNA upstream 25699 18809356 ~ 18818700 (+) False dbpb
XM_021622703.2 mRNA upstream 25699 18809362 ~ 18818700 (+) True dbpb
XM_036940689.1 mRNA upstream 38314 18797775 ~ 18806085 (+) False si:dkeyp-69b9.6
XM_036940756.1 mRNA downstream 20684 18873484 ~ 18930557 (+) False si:dkeyp-69b9.3
XM_036940751.1 mRNA downstream 22036 18874836 ~ 18930557 (+) False si:dkeyp-69b9.3
XM_036940757.1 mRNA downstream 22037 18874837 ~ 18930557 (+) True si:dkeyp-69b9.3
XM_036940783.1 mRNA downstream 81410 18934210 ~ 18939403 (+) False LOC110514612
XM_036940790.1 mRNA downstream 81410 18934210 ~ 18939403 (+) True LOC110514612
TU137405 other upstream 172079 18670513 ~ 18672320 (+) True G119160
TU137398 other upstream 208358 18633839 ~ 18636041 (+) True G119153
TU137225 other upstream 367265 18476424 ~ 18477134 (+) False LOC110536658
TU137226 other upstream 368045 18457358 ~ 18476354 (+) False LOC110536658
TU135495 other upstream 1386377 17455765 ~ 17458022 (+) True G117735
TU137542 other downstream 106336 18959136 ~ 18961465 (+) False G119245
TU137673 other downstream 403786 19256586 ~ 19257494 (+) False LOC110503718
TU138223 other downstream 653851 19506651 ~ 19507338 (+) True G119794
TU138235 other downstream 673394 19526194 ~ 19527873 (+) False LOC110537095
TU138236 other downstream 673394 19526194 ~ 19528660 (+) True LOC110537095

Expression Profile