RNA id: XM_036940783.1


Basic Information

Item Value
RNA id XM_036940783.1
length 1251
RNA type mRNA
GC content 0.45
exon number 9
gene id LOC110514612
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18934210 ~ 18939403 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAGTTAAATAAGGTAATGAGGGGGCTTCTTAAGGAAGTAAAAATACCACATAAATATCAAGTGTATTTGTCCAAGTGACCATCTGTAACATCTTACTTGTTACTACTACAACTGAACCAGCTACTACCACACCTGTACCCAGCATCATGCTCCTTGTCAGACTGACTGCGTTCACCTTGCTGGCTGCAGTTAGCTGTACACTACCAGCTGCAGCGACGAGAGTGGTCACCTGTGACAATGGAGAAAACGTCCAGTTCCTGATCTGTGATTCTGGAGTGATCTTCATTGAGAGAGCTCTGTATGGAAGGACTGACGGAACCACCTGCAGAGAAGGACGACTTGCCAACCAGCTGACCAACACACAGTGTTCACAGACGGGCACCCTGGAGGTCCTCTCACAGAGGTGCAATGGGAAACAGGTGTGTGAAGTGAACACTGAAGTCTTCCGTACTTCTGACCCCTGTGTTGGAATCTACAAATACCTGGATACCACCTACACCTGCAGCCCAGCAACACGCAGCATCACGTGTGAAGGCTCTGATGTTCAACTAGAATGTGATGAAGGAACGATCCAGATCTACAGTGCCAACTATGGCCGCCGTGACCAGCTAGTGTGTTCTTTTAAACGGCCCGCTAACCAACTAGCCAACACCAACTGCCTCAGCCAATCCATAACCACCAGTAAGGTGGCAGAGAGGTGTAATGGTAAGATCAAGTGTGACGTCCCGGCGTCCAACTCTCTGTATGGAGATCCATGTGTTGGAACCTACAAGTACCTGGAAGTGGCGTACACCTGTGGCTAAATGTTAGGGACGCATGCATACgGAGATCTTCTCTGAGGAACAAAGACCAGAGAGACTACTTGGATATCTTCCTCTTCATTGGGTGGATTTGTATTTCTTTCCCGTCTTCTCTCCTCTGAAGTCTCAATTGAGTGTAAAATCTATGTAAATTCAAAATGTGTAAATCCCATTGATTGTGTATTTCATGAGGCATAACTTGTGTAATAAAATCATAATGAGGCCCCTCTTGTGCTGCAGCAATGCACGGTCAGGAGGAAGCATGGAGAAATTAAACATTAACCCCAAAAATAAACTATTCTTCAAATAACACTGACATAATACTTTGCATTTTGTGTACTAAAGTATTTCTTCAAAACAATGTTGATTTTCTGAACTGAGGTGGTTGGTCTGATTTTCACTAAGAACTGTGGTGGTTGGTCTGAATTAATCTAAGCAGCATAAAGACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137510 lncRNA upstream 111647 18821888 ~ 18822563 (+) True G119241
TU137427 lncRNA upstream 137034 18793703 ~ 18797176 (+) True LOC118938256
TU137488 lncRNA upstream 189967 18740694 ~ 18744243 (+) True G119222
TU137484 lncRNA upstream 190490 18740694 ~ 18743720 (+) False G119222
TU137404 lncRNA upstream 271099 18662619 ~ 18663111 (+) True G119159
TU137540 lncRNA downstream 34373 18973776 ~ 18992769 (+) True G119245
TU137651 lncRNA downstream 113405 19052808 ~ 19057561 (+) True G119330
TU137635 lncRNA downstream 122693 19062096 ~ 19063167 (+) True G119317
TU137636 lncRNA downstream 137723 19077126 ~ 19078187 (+) True G119318
TU137697 lncRNA downstream 196159 19135562 ~ 19135783 (+) True G119367
XM_036940756.1 mRNA upstream 3653 18873484 ~ 18930557 (+) False si:dkeyp-69b9.3
XM_036940751.1 mRNA upstream 3653 18874836 ~ 18930557 (+) False si:dkeyp-69b9.3
XM_036940757.1 mRNA upstream 3653 18874837 ~ 18930557 (+) True si:dkeyp-69b9.3
XM_036940740.1 mRNA upstream 81410 18844399 ~ 18852800 (+) False LOC110534353
XM_036940736.1 mRNA upstream 81410 18844751 ~ 18852800 (+) True LOC110534353
XM_036940776.1 mRNA downstream 7075 18946478 ~ 18952152 (+) False LOC110508936
XM_036940769.1 mRNA downstream 7076 18946479 ~ 18952152 (+) True LOC110508936
XM_036940762.1 mRNA downstream 16662 18956065 ~ 18961266 (+) False LOC110517769
XM_036940765.1 mRNA downstream 16662 18956065 ~ 18961266 (+) False LOC110517769
XM_036940767.1 mRNA downstream 17052 18956455 ~ 18961395 (+) True LOC110517769
TU137405 other upstream 261890 18670513 ~ 18672320 (+) True G119160
TU137398 other upstream 298169 18633839 ~ 18636041 (+) True G119153
TU137225 other upstream 457076 18476424 ~ 18477134 (+) False LOC110536658
TU137226 other upstream 457856 18457358 ~ 18476354 (+) False LOC110536658
TU135495 other upstream 1476188 17455765 ~ 17458022 (+) True G117735
TU137542 other downstream 19733 18959136 ~ 18961465 (+) False G119245
TU137673 other downstream 317183 19256586 ~ 19257494 (+) False LOC110503718
TU138223 other downstream 567248 19506651 ~ 19507338 (+) True G119794
TU138235 other downstream 586791 19526194 ~ 19527873 (+) False LOC110537095
TU138236 other downstream 586791 19526194 ~ 19528660 (+) True LOC110537095

Expression Profile