RNA id: XM_036940765.1


Basic Information

Item Value
RNA id XM_036940765.1
length 1143
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC110517769
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18956065 ~ 18961395 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATTCCCGTAAAGCAAAATCGTCCCACGGCTGAATGTAATTGGGGACGTCTGCCATAGGATATATAATCATTAATACCTGAACAAGCTCCTTTCAGAGATGCAGGAGAAACAAGCCAGCTCAGGGTGACCATCTGTAACATCTTACGTGTTACTACTACAACTGAACCAGCTACTACCACACCTGTACCCAGCATCATGCTCCTTGTCAGACTGACTGCGTTCACCTTGCTGGCTGCAGTTTGCTGTACACTACCAGCTGCAGTGACGAGAGTGGTCACCTGTGACAATGGAGAAAACGTCCAGTTCCTGATCTGTGATTCTGGAGTGATCTTCATTGAGAGAGCTCTGTATGGAAGGACTGACGGAACCACCTGCAGAGAAGGACGACCTGCCAACCAGCTGACCAACACACAGTGTTCACAGACGGGCACCCTGGAGGTCCTCTCACAGAGGTGCAATGGGAAACAGGTGTGTGAAGTGAACACTGAAGTCTTCCGTACTTCTGACCCCTGTGTTGGAATCTACAAATACCTGGATACCACCTACACCTGCAGCCCAGCAACACGCAGCATCACGTGTGAAGGCTCTGATGCTCAACTAGAATGTGATGAAGGAACGATCCAGATCTACAGTGCCAACTATGGCCGCCGTGACCAGCTAGTGTGTTCTTTTAAACGGCCCGCTAACCAACTAGCCAACACCAACTGCCTCAGCCAATCCATAACCACCAGTAAGGTGGCAGTGAGGTGTAATGGTAAGATCCAGTGTGACGTCCCGGCGTCCAACTCTCTGTATGGAGATCCATGTGTTGGAACCTACAAGTACCTGGAAGTGGCGTACACCTGTGGCTAAATGAGATCTTCTCTGAGGAACAAAGACCAGAGAGACTACTTGGATATCTTCCTCTTCATTGGATGGATTTGTATTTCTTTCCCGTCTTCTCTCCTCTGAAGTCTCAATTGAGTGTAAAATCTATGTAAATTCAAAATTGGTAAATCCCATTGATTGTGTATTTCATGAGGCATAACTTGTGTAATAAAATCATGAGGCCCCTCTTGTGCTGCAGCAATGCACGGTCAGGAGGAAGCATGGAGAAATTAAACATTAACCCCAAAAATAAACTATTCTTCAAATAACACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137528 lncRNA upstream 3880 18934673 ~ 18952185 (+) False G119245
TU137522 lncRNA upstream 3880 18936509 ~ 18952185 (+) False G119245
TU137529 lncRNA upstream 16818 18938110 ~ 18939247 (+) False G119245
TU137510 lncRNA upstream 133502 18821888 ~ 18822563 (+) True G119241
TU137427 lncRNA upstream 158889 18793703 ~ 18797176 (+) True LOC118938256
TU137540 lncRNA downstream 12510 18973776 ~ 18992769 (+) True G119245
TU137651 lncRNA downstream 91542 19052808 ~ 19057561 (+) True G119330
TU137635 lncRNA downstream 100830 19062096 ~ 19063167 (+) True G119317
TU137636 lncRNA downstream 115860 19077126 ~ 19078187 (+) True G119318
TU137697 lncRNA downstream 174296 19135562 ~ 19135783 (+) True G119367
XM_036940776.1 mRNA upstream 3913 18946478 ~ 18952152 (+) False LOC110508936
XM_036940769.1 mRNA upstream 3913 18946479 ~ 18952152 (+) True LOC110508936
XM_036940783.1 mRNA upstream 16662 18934210 ~ 18939403 (+) False LOC110514612
XM_036940790.1 mRNA upstream 16662 18934210 ~ 18939403 (+) True LOC110514612
XM_036940757.1 mRNA upstream 25508 18874837 ~ 18930557 (+) True si:dkeyp-69b9.3
XM_036990228.1 mRNA downstream 9943 18971209 ~ 18977511 (+) False stl2
XM_036990236.1 mRNA downstream 9944 18971210 ~ 18977511 (+) False stl2
NM_001124196.1 mRNA downstream 11988 18973254 ~ 18977376 (+) True stl2
XM_036940804.1 mRNA downstream 23529 18984795 ~ 18991367 (+) False LOC118938275
XM_036940795.1 mRNA downstream 23530 18984796 ~ 18991367 (+) False LOC118938275
TU137405 other upstream 283745 18670513 ~ 18672320 (+) True G119160
TU137398 other upstream 320024 18633839 ~ 18636041 (+) True G119153
TU137225 other upstream 478931 18476424 ~ 18477134 (+) False LOC110536658
TU137226 other upstream 479711 18457358 ~ 18476354 (+) False LOC110536658
TU135495 other upstream 1498043 17455765 ~ 17458022 (+) True G117735
TU137673 other downstream 295320 19256586 ~ 19257494 (+) False LOC110503718
TU138223 other downstream 545385 19506651 ~ 19507338 (+) True G119794
TU138235 other downstream 564928 19526194 ~ 19527873 (+) False LOC110537095
TU138236 other downstream 564928 19526194 ~ 19528660 (+) True LOC110537095
TU138343 other downstream 715469 19676735 ~ 19683059 (+) True LOC110537226

Expression Profile