RNA id: XM_036940804.1


Basic Information

Item Value
RNA id XM_036940804.1
length 1158
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC118938275
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18984795 ~ 18991367 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGGGGCGCAGGCCAGGGGCATTAATAGAATTCCCGTAAAGCAAAATCGTCCCACGGCTGAATGTAATTGGGGACGTCTGCCATAGGATATATAATCATTAATACCTGTGCACGCTCCTTTCAGAGACGCAGGAGAAACAAGCCAGCTCAGGGTGACCATCTGTAACATCTTACGTGTTACTACTACAACTGAACCAGCTACTACCACACCTGTACCCAGCATCATGCTCCTTGTCAGACTGACTGCGTTCACCTCGACGAGAGTGGTCACCTGTGACAATGGAGAAAACGTCCAGTTCCTGATCTGTGATTCTGGAGTGATCTTCATTGAGAGAGCTCTGTATGGAAGGACTGACGGAACCACCTGCAGAGAAGGACGACCTGCCAACCAGCTGACCAACACACAGTGTTCACAGACGGGCACCCTGGAGGTCCTCTCACAGAGGTGCAATGGGAAACAGGTGTGTGAAGTGAACACTGAAGTCTTCCGTACTTCTGACCCCTGTGTTGGAATCTACAAATACCTGGATACCACCTACACCTGCAGCCCAGCAACACGCAGCATCACGTGTGAAGGCTCTGATGCTCAACTAGAATGTGATGAAGGAACGATCCAGATCTACAGTGCCAACTATGGCCGCCGTGACCAGCTAGTGTGTTCCTTTAAACGGCCCGCTAACCAACTAGCCAACACCAACTGCCTCAGCCAATCCATAACCACCAGTAAGGTGGCAGAGAGGTGTAATGGTAAGATCAAGTGTGACGTTCCGGCGTCCAACTCTCTGTATGGAGATCCATGTGTTGGAACCTACAAGTACCTAGAAGTGGCGTACACCTGTGGCTAAATGTTAGGGACGCATGCATacgGAGATCTTCTCTGAGGAACAAAGACCAGAGAGACTACTTGGATATCTTCCTCTTCATTGGGTGGATTTGTATTTCTTTCCCGTCTTCTCTCCTCTGAAGTCTCAATTGAGTGTAAAATCTATGTAAATTCAAAATGTGTAAATCCCATTGATTGTGTATTTCATGAGGCATAACTTGTGTAATAAAATCATAATGAGGCCCCTCTTGTGCTCCAGCAATGCACGGTCAGGAGGAAGCATGGAGAAATTAAACATTAACCCCAAAAATAAACTATTCTTCAAATAACACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137528 lncRNA upstream 32610 18934673 ~ 18952185 (+) False G119245
TU137522 lncRNA upstream 32610 18936509 ~ 18952185 (+) False G119245
TU137529 lncRNA upstream 45548 18938110 ~ 18939247 (+) False G119245
TU137510 lncRNA upstream 162232 18821888 ~ 18822563 (+) True G119241
TU137427 lncRNA upstream 187619 18793703 ~ 18797176 (+) True LOC118938256
TU137651 lncRNA downstream 61441 19052808 ~ 19057561 (+) True G119330
TU137635 lncRNA downstream 70729 19062096 ~ 19063167 (+) True G119317
TU137636 lncRNA downstream 85759 19077126 ~ 19078187 (+) True G119318
TU137697 lncRNA downstream 144195 19135562 ~ 19135783 (+) True G119367
TU137702 lncRNA downstream 148820 19140187 ~ 19140667 (+) True G119372
XM_036990228.1 mRNA upstream 7284 18971209 ~ 18977511 (+) False stl2
XM_036990236.1 mRNA upstream 7284 18971210 ~ 18977511 (+) False stl2
NM_001124196.1 mRNA upstream 7419 18973254 ~ 18977376 (+) True stl2
XM_036940767.1 mRNA upstream 23400 18956455 ~ 18961395 (+) True LOC110517769
XM_036940762.1 mRNA upstream 23529 18956065 ~ 18961266 (+) False LOC110517769
XM_036940820.1 mRNA downstream 3471 18994838 ~ 19000210 (+) False LOC110520830
XM_036940811.1 mRNA downstream 3473 18994840 ~ 19000210 (+) False LOC110520830
XM_036940828.1 mRNA downstream 3866 18995233 ~ 19000210 (+) True LOC110520830
XM_036961707.1 mRNA downstream 140538 19131905 ~ 19259074 (+) False LOC110503718
XM_036940852.1 mRNA downstream 316209 19307576 ~ 19347300 (+) True LOC110512786
TU137542 other upstream 23330 18959136 ~ 18961465 (+) False G119245
TU137405 other upstream 312475 18670513 ~ 18672320 (+) True G119160
TU137398 other upstream 348754 18633839 ~ 18636041 (+) True G119153
TU137225 other upstream 507661 18476424 ~ 18477134 (+) False LOC110536658
TU137226 other upstream 508441 18457358 ~ 18476354 (+) False LOC110536658
TU137673 other downstream 265219 19256586 ~ 19257494 (+) False LOC110503718
TU138223 other downstream 515284 19506651 ~ 19507338 (+) True G119794
TU138235 other downstream 534827 19526194 ~ 19527873 (+) False LOC110537095
TU138236 other downstream 534827 19526194 ~ 19528660 (+) True LOC110537095
TU138343 other downstream 685368 19676735 ~ 19683059 (+) True LOC110537226

Expression Profile