RNA id: XM_036940811.1


Basic Information

Item Value
RNA id XM_036940811.1
length 1260
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC110520830
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18994838 ~ 19000210 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCCGTAAAGCAAAATCGTCCCACGGCTGAATGTAATTGGGGACGTCTGCCATAGGATATATAATCATTAATACCTGAACAAGCTTCTTTCAGAGACGCAGGAGAAACAGGCCAGCTCAGGGTGACCATCTGTAACATCTTACGTGTTACTACTACAACTGAACCAGCTACTACCACACCTGTACCCAGCATCATGCTCCTTGTCAGACTGACTGCGTTCACCTTGCTGGCTGCAGTTTGCTGTACACTACCAGCTGCAGCGACGAGATTGGTCACTTGTGACAATGGAGAAAACGTCCAGTTCCTGATCTGTGATTCTGGAGTGATCTTCATTGAGAGAGCTCTGTATGGAAGGACTGACGGAACCACCTGCAGAGAAGGACGACCTGCCAACCAGCTGACCAACACACAGTGTTCACAGACGGGCACCCTGGAGGTCCTCTCACAGAGGTGCAATGGGAAACAGGTGTGTGAAGTGAACACTGAAGTCTTCCGTACTTCTGACCCCTGTGTTGGAATCTACAAATACCTGGATACCACCTACACCTGCAGCCCAGCAACACGCAGCATCACGTGTGAAGGCTCTGATGCTCAACTAGAATGTGATGAAGGTACGATCCAGATCCACAGTGCCAACTATGGCCGCCGTGACCAGCTAGTGTGTTCCTTTAATCGGCCCGCTAACCAACTAGCCAACACCAACTGCCTCAGCCAATCCACCACTGCCAGTAAGGTGGCAAAGAGGTGTAATGGGAAGAGCCAGTGTGACGTCCCGGTGTCCAACTCTCTGTATGGAGATCCCTGTGTAGGAACCTACAAGTACCTGGATGTGGCGTACACCTGTGGCTAAACGCAATCTTCTGAGGAACAAAGACCAGAGAGACTACTTGGATATCTTCCTCTTCATTGGGTGGATGTCTTTCTTTCCGGTCCTCTCGCCTCCTTCTGAAATCTCAATTGAGTGTAAAATCAATGTAAATCACATTAATTGTGTATTTGGTCATAGGCATAATTTGTGTGTGGTAACATGTTTTGAAATGAGGCCCCTCTGGATCCTTATCCCTGGTGCTGCAGCAAGGCATGGTCAAGAGGATGAATGGAGAAATAAAACATTAACCCCAAAAAATGAACTTTATTTCAAATAACATTGTTACCATAATACTTAGTGCACTTTGTGTACTAAAGTATTTCTTCAAAACAATGTTGATCTTCTAAACTGTGCTGTTTGATCTGAATTAAACTAAGCAGCATAGACCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137540 lncRNA upstream 2071 18973776 ~ 18992769 (+) True G119245
TU137528 lncRNA upstream 42655 18934673 ~ 18952185 (+) False G119245
TU137522 lncRNA upstream 42655 18936509 ~ 18952185 (+) False G119245
TU137529 lncRNA upstream 55593 18938110 ~ 18939247 (+) False G119245
TU137510 lncRNA upstream 172277 18821888 ~ 18822563 (+) True G119241
TU137651 lncRNA downstream 52598 19052808 ~ 19057561 (+) True G119330
TU137635 lncRNA downstream 61886 19062096 ~ 19063167 (+) True G119317
TU137636 lncRNA downstream 76916 19077126 ~ 19078187 (+) True G119318
TU137697 lncRNA downstream 135352 19135562 ~ 19135783 (+) True G119367
TU137702 lncRNA downstream 139977 19140187 ~ 19140667 (+) True G119372
XM_036940804.1 mRNA upstream 3473 18984795 ~ 18991367 (+) False LOC118938275
XM_036940795.1 mRNA upstream 3473 18984796 ~ 18991367 (+) False LOC118938275
XM_036940801.1 mRNA upstream 3473 18984796 ~ 18991367 (+) False LOC118938275
XM_036940807.1 mRNA upstream 3473 18984796 ~ 18991367 (+) True LOC118938275
NM_001124196.1 mRNA upstream 17464 18973254 ~ 18977376 (+) True stl2
XM_036961707.1 mRNA downstream 131695 19131905 ~ 19259074 (+) False LOC110503718
XM_036940852.1 mRNA downstream 307366 19307576 ~ 19347300 (+) True LOC110512786
XM_036940854.1 mRNA downstream 392527 19392737 ~ 19433631 (+) True LOC110534362
XM_021622737.2 mRNA downstream 443921 19444131 ~ 19481383 (+) False LOC110537022
XM_021622742.2 mRNA downstream 443921 19444131 ~ 19481383 (+) True LOC110537022
TU137542 other upstream 33375 18959136 ~ 18961465 (+) False G119245
TU137405 other upstream 322520 18670513 ~ 18672320 (+) True G119160
TU137398 other upstream 358799 18633839 ~ 18636041 (+) True G119153
TU137225 other upstream 517706 18476424 ~ 18477134 (+) False LOC110536658
TU137226 other upstream 518486 18457358 ~ 18476354 (+) False LOC110536658
TU137673 other downstream 256376 19256586 ~ 19257494 (+) False LOC110503718
TU138223 other downstream 506441 19506651 ~ 19507338 (+) True G119794
TU138235 other downstream 525984 19526194 ~ 19527873 (+) False LOC110537095
TU138236 other downstream 525984 19526194 ~ 19528660 (+) True LOC110537095
TU138343 other downstream 676525 19676735 ~ 19683059 (+) True LOC110537226

Expression Profile