RNA id: XM_021622816.2


Basic Information

Item Value
RNA id XM_021622816.2
length 2131
RNA type mRNA
GC content 0.53
exon number 11
gene id u2af2a
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19506668 ~ 19513981 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTGTATATCAACTTCCGGTGTCACGGGGTGCCTGGGAGACGAAACGCAAAAAGCGGGCATACCGAACATATCCCGTATTTTCTCCTTGTATACATTTAATTGAAAAACATACATTGGGACGACGCAAAACACCGTTGCAACATCAATAGGACGAACGGCATAACATTGGATGTGCAATTGTACCAGCATATCCTTATTCACTCGACTTGCTATTTAGCATTAGCTCGCTACCACGACTGCTTCAAGAACAGGCCCCAGCCTGGACTTTGCTTTATCTAACTAGCTATCACAAGATAACCCGTTTTCTTCATCAACGTTATTTTCAGTTCTTAGTGTAAACTAGAACCACATCTTTAACTCACTTGGAGTTGTTTATTTTGATATTTCTAAACCGTTGCATTGGTGGTGTGTAGTTAGCTAGCATTTTACTAAGTGTGCTGTGCACTTTTTTCGCAAGCTAGCGACCGCTCAGCATTCCCGTCCATTTTACAGTCacaactaactaactagctagggCTAGCAAATAAGAAACGGCAATGTCGGATTTCGACGAATTCGAGAGACAACTGTCTGAAAACAAACAAGCGGAGAAGGACAAGGAGAACCGCCACCACCGTCGCTCCCCCTCTCGCAGCCgcagcagagagaggaagaggaggagcagagacaAGGACAGACGCAGCAGGGATCGCCGTGGAGACAGCAAGGAGCGCAGACCGAGACGCAGTCGTTCCCCGCACCGTGAAACGAAGAAGAAGAACAAAGTGAAGAAGTACTGGGACGTCCCTCCTCCTGGCTTTGAACACATCAGTGTGATGCAGTACAAAGCCATGCAGGCTGCGGGTCAGATCCCAGCCACGGCCCTGCTGCCCACCATGACCCCAGACGGCCTGGCCGTGACCCCCACTCCCGTCCCTGTGGTGGGAAGCCAGATGACCAGACAGGCCCGTCGGCTTTATGTGGGCAACATCCCCTTCGGCATCACAGAGGAGTCCATGATGGATTTCTTCAACGCTCAGATGCGTCTGGGTGGTCTCACTCAGGCTCCAGGAAACCCCGTCCTCGCTGTTCAGATCAACCAGGACAAGAACTTTGCCTTCCTCGAGTTCCGCTCAGTGGATGAGACGACCCAGGCCATGGCGTTCGATGGCATCATCTTCCAGGGACAGAGTCTGAAGATCCGCCGTCCCCATGACTACCAGCCTCTGCCTGGCATGAGCGAGAACCCCAGCGTCTACgtgcctgGCGTGGTGTCCACAGTGGTGCCTGACTCGGCCCACAAGCTGTTCATCGGGGGCCTGCCCAACTACCTGAATGATGACCAGGTGAAGGAGCTCCTGACATCGTTTGGGCCTCTCAAGGCCTTTAACTTGGTCAAGGATAGTGCCACAGGTTTGTCTAAGGGTTATGCGTTCTGTGAGTATGTAGACGTCAACCTGAACGACCAGATCACCATGGAGAATCAGGCCATAGCAGGACTCAACGGCATGCAGCTGGGAGATAAAAAGCTCCTGGTGCAGAGAGCCAGCGTGGGATCCAAGAATGCCACTCTGacAAGTATAAACCAGACCCCGGTGACGCTGCAGGTGCCGGGCCTGATGAACAGCTCAATGACCCAGATGGCTGGCTTGCCCACAGAGGTGCTGTGTCTGATGAATAtggtggctgtggaggagctggtGGATGAAGAGGAATATGAGGAGATCGTGGAGGATGTGAGGGACGAGTGCAGCAAGTACGGCCAGGTCAAGAGCATCGAGATCCCCAGACCTGTGGATGGGCTGGAGGTCCCTGGCACTggcaagATCTTTGTGGAGTTCATGTCAGTGTTTGACTCCCAGAAGGCCATGCAGGGTCTGACGGGCAGGAAGTTTGCTAACCGGGTGGTGGTGACCAAATACTGCGACCCTGATGCCTACCACCGCCGAGACTTCTGGTAGAGGATGACGACAGGCGAGGatagtgagggggggggggtggattgtCATATTTCAAATCGACCCCTAACCCCATACCACCTAGGCACTTGTTTTGACCTGAAAAGGTGTGAGCGACATAATGTTTCACCTAGTCCATCAGAAGGCCAGGTGGAGTTCAGAGAAGTACCCGGGGGTAGGGGCTGGGGATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139390 lncRNA downstream 7576 19493355 ~ 19499097 (-) False cacng6b
TU139391 lncRNA downstream 7576 19493355 ~ 19499097 (-) True cacng6b
TU139395 lncRNA downstream 14331 19492071 ~ 19492342 (-) True G120738
TU139393 lncRNA downstream 16425 19489284 ~ 19490248 (-) True G120736
TU139388 lncRNA downstream 18441 19485715 ~ 19488232 (-) False cacng6b
TU139405 lncRNA upstream 5665 19519645 ~ 19574747 (-) True G120745
TU139378 lncRNA upstream 14154 19528134 ~ 19533898 (-) False LOC110537080
TU139379 lncRNA upstream 14154 19528134 ~ 19533898 (-) True LOC110537080
TU139453 lncRNA upstream 104633 19618613 ~ 19619612 (-) True G120786
TU139474 lncRNA upstream 146911 19660891 ~ 19750081 (-) False G120801
XM_036940887.1 mRNA downstream 7531 19484328 ~ 19499142 (-) False cacng6b
XM_036940896.1 mRNA downstream 11762 19484328 ~ 19494911 (-) False cacng6b
XM_036940840.1 mRNA downstream 428720 19062094 ~ 19077953 (-) True LOC110508916
NM_001160513.2 mRNA downstream 748877 18755291 ~ 18757796 (-) True josd2
XM_036940644.1 mRNA downstream 798042 18695833 ~ 18708631 (-) False LOC110536927
XM_036940928.1 mRNA upstream 299 19514279 ~ 19524832 (-) True LOC110534365
XM_036940934.1 mRNA upstream 14015 19527995 ~ 19548154 (-) False LOC110537080
XM_036934601.1 mRNA upstream 40938 19554918 ~ 19556239 (-) False LOC110537104
XM_036934602.1 mRNA upstream 40938 19554918 ~ 19556242 (-) True LOC110537104
XM_021623039.2 mRNA upstream 69067 19583047 ~ 19585670 (-) True LOC110537188
TU139386 other downstream 18441 19484337 ~ 19488232 (-) False cacng6b
TU139389 other downstream 18441 19485649 ~ 19488232 (-) False cacng6b
TU138073 other downstream 457643 19048307 ~ 19049030 (-) True G119663
TU137868 other downstream 705286 18799500 ~ 18801387 (-) True G119512
TU137801 other downstream 860010 18637881 ~ 18646663 (-) True LOC110534340
TU139490 other upstream 179709 19693689 ~ 19695564 (-) True LOC118944062
TU139615 other upstream 410118 19924098 ~ 19928460 (-) True LOC110537275
TU139782 other upstream 697088 20211068 ~ 20212367 (-) True G121046
TU139863 other upstream 948702 20462682 ~ 20465789 (-) True LOC110509624
TU139931 other upstream 984916 20498896 ~ 20500587 (-) True G121188

Expression Profile