RNA id: XM_036940928.1


Basic Information

Item Value
RNA id XM_036940928.1
length 2567
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC110534365
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19514279 ~ 19524832 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTAAATTATAGACTCTCCCTTAGGTAACCGGAAACGACGGCGAACGACATAAACAAGATTGTAAAATGAACGCTAAATTATTAATGTTATAGCTAGGTACGAAAGTGGACAGAATGAACGGGATTTATATATGAAATACATTGTTATAACGACTGAATAACGGGTGCACGAGATGCAGGAGGGAAATATTAATGACGCTTTGCCTACCTCCAAGACCCACACAGGCTCCCACCCCATGCAGACTCCGAAGAACGAGGATGCCTATGAAATCTCCATTCCCTTTGAGGAGAACAACTTTGAGCAGCAAGGCTTCTTCAATCAGAATGAGCAGAGTTTTGAAGagtcgccCCCTCCCTCGGGTGCCCCCCCACCAGGCAGCTCGTACCTGCTGATAACCAACCTGCGGACGCAGCTGCAGATCTCCCTGGAGAAGAACTCGTGGCTGCACAAACGCATAGAggacctggaggaggagagggacttCCTGCGTTGCCAGCTGGACCGCTTCATCTTCTCTACCAAGACCCAGGGCCATCAGAACCAGGGCCCCAGCGAGAGCCAGTACAGCAACGGCTATGACTCTAGACGTTTTGAATGGAAGccgaggagagaggtggagcgcCCAGTTGAGCAGAAGTCCGAGCCACAGCGTTTCACATCTCGTCAGATATTCCAGCGAAGACCCTCCCCAACTGCCATGGCCCCACCCAAAAACCACACTTCCAGCACGATAGCCAATCAGATGGCCGCAATGAGCTCCATGTTCAGCTCCGGGGCCTCCCAGACCCTCTTGCAGGGGCACAGCAGTGGCAGTAGCAGTGCTAACAGAGCCACCATGAGTGAAATGAATGCACACGGGAGCATAGGGCCAGATTCCCTGTCCCTCCTGGGGGAGGCCGAGGAGTTCCTGGAGCAGGATGGCTACATGAACGAGGAGGAAATGATTTCAGGAGAGGACGTGATGTCCGAGGGCATGAGCGGCGGTGGGCACCCAGGGATGAAGAGGAGGCGGGTCTTCCGAATCaccagggagaggcagagagtCAAAGACGCTGCAGGGGTTCTGTTTCGCTACAAGAAGATCCTGCTGACCTACCAGCGGCTGAAGAACATGTCTAAGGCCTTCCAGATCCACGGCGTAGACCGCAACACGGTGGCCTCCACCACGCCCATCGCTGAGATGCTGCTGGTGGCCCCGGAGAAGGTGGCGGAGGTGGGCGAGTTTGACCCGTCCAAGGAGAAGCTGCTGGATTACGCACGGCGCTGCTACGTCGCCCTGGACGAGGAGACGCTAAGCAGGGTGCAGGCCCTGAAGAAGAACAACCTGCTACTACCCATCTCCTACAGGTTGAAAGGAGGAGAGGATTCTCTTAAAGAGAAGGAAACTCACGCGACCACAAACTGAACAAAGCAAAGAGTAGTTGCACACTCTATTGCTCAGATTCAATCCTTTAGTAGAATCACTCCAGTGTTCTGTCAGAAAGCTTCCAGGTTCTGAAACAAAGGAAGTTAGCTAGCTGACTGACCACTGGTGTTGTATCTGCACCAGAACAGCAGAATAAGCAGATATTCTTTGCTTTGGAAGAAGGATGAGGCCAGTTTTGGGGACAGTTCTACTGTGAGGCTAAGCTGTTGTACCACAAATACATCACTTTTTTTGTTGCACCAGAATATATTCTGTCACTGTAAAGTGCCACTGTAGCATACAGTTGTGAGATGTGTCATTTGACTGAAGTGTGGTGTAGTATAACATCACGTACCCTTTGTACTGTGCTACGAAGATGAGTTTTTTACTATAATAGTAGTACGATTTACTGTGCTATTTCACCATCAGTTGAGATTTTTTTCAGTCCTATACTGCAATACTTTGTTTGCTTGGGAATAATTTATTGCAATTAGATTGCATACTATTAGGTTTCTCTTTTTTTGTGTTCCAGTAAGCTCAGTGATTTCCACAAAAGGGACAAAATACAAATGTTGATTTTTATTTGAACATATCAATCACCAGTTCCCCATTACAATTGCATGTGAAATTAACTCTTGTTGGTCAGTTGTTTAGACAGAGCTGTTGTTGAACTTAATAATGATGTTAAAAAAAATGGCAGTAGTATTGGCGATGGTGTAATATAGTGGTATATTGTGTGTTTATTATACTGGTACAAGGAATTGCTGAGACCCCAGGTTGTCTGAGTGTGTGAAAGGGTACCTCTCAGTTTAAACTTCATGTCTTACTTATTCACAACACAAACTCACCCACTGACCGGTGTCAGTGTGTACAACTGCTGAAATCATGTTATGTTACAACACCTTTTATACGGGTCAGAGATGTCATTTTGACTTTAATAAGGAACCAATAATTTACTGAACGGTGCAGTACAACCTGTATCATTTAAGATACCGGTCTCTGTGTGTGCAGCATTTCAAAAATGTTTAATATTGTATTTCTCTTCAATAATCACGAGGAGTAGCCTatattcaaaaactgaaaatgtttggttgattATACAAATTGTATGGACTGTAAAAACAGAAATGCCATTAAAGCATTTGATTTCTTTAAAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139390 lncRNA downstream 15182 19493355 ~ 19499097 (-) False cacng6b
TU139391 lncRNA downstream 15182 19493355 ~ 19499097 (-) True cacng6b
TU139395 lncRNA downstream 21937 19492071 ~ 19492342 (-) True G120738
TU139393 lncRNA downstream 24031 19489284 ~ 19490248 (-) True G120736
TU139388 lncRNA downstream 26047 19485715 ~ 19488232 (-) False cacng6b
TU139378 lncRNA upstream 3302 19528134 ~ 19533898 (-) False LOC110537080
TU139379 lncRNA upstream 3302 19528134 ~ 19533898 (-) True LOC110537080
TU139453 lncRNA upstream 93781 19618613 ~ 19619612 (-) True G120786
TU139474 lncRNA upstream 136059 19660891 ~ 19750081 (-) False G120801
TU139475 lncRNA upstream 136059 19660891 ~ 19662171 (-) False G120801
XM_036940908.1 mRNA downstream 298 19506673 ~ 19513981 (-) True u2af2a
XM_021622771.2 mRNA downstream 299 19506668 ~ 19513980 (-) False u2af2a
XM_021622797.2 mRNA downstream 299 19506673 ~ 19513980 (-) False u2af2a
XM_021622816.2 mRNA downstream 299 19506673 ~ 19513980 (-) False u2af2a
XM_036940887.1 mRNA downstream 15137 19484328 ~ 19499142 (-) False cacng6b
XM_036940934.1 mRNA upstream 3163 19527995 ~ 19548154 (-) False LOC110537080
XM_036934601.1 mRNA upstream 30086 19554918 ~ 19556239 (-) False LOC110537104
XM_036934602.1 mRNA upstream 30086 19554918 ~ 19556242 (-) True LOC110537104
XM_021623039.2 mRNA upstream 58215 19583047 ~ 19585670 (-) True LOC110537188
XM_036940955.1 mRNA upstream 66707 19591539 ~ 19595179 (-) True LOC118936409
TU139386 other downstream 26047 19484337 ~ 19488232 (-) False cacng6b
TU139389 other downstream 26047 19485649 ~ 19488232 (-) False cacng6b
TU138073 other downstream 465249 19048307 ~ 19049030 (-) True G119663
TU137868 other downstream 712892 18799500 ~ 18801387 (-) True G119512
TU137801 other downstream 867616 18637881 ~ 18646663 (-) True LOC110534340
TU139490 other upstream 168857 19693689 ~ 19695564 (-) True LOC118944062
TU139615 other upstream 399266 19924098 ~ 19928460 (-) True LOC110537275
TU139782 other upstream 686236 20211068 ~ 20212367 (-) True G121046
TU139863 other upstream 937850 20462682 ~ 20465789 (-) True LOC110509624
TU139931 other upstream 974064 20498896 ~ 20500587 (-) True G121188

Expression Profile