RNA id: TU138235



Basic Information


Item Value
RNA id TU138235
length 1195
RNA type TUCP
GC content 0.45
exon number 2
gene id LOC110537095
representative False

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19526163 ~ 19528660 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GAAGAACCGGAAGGATACAGTTTGAGTGGATTCTACTTACATTTTTAAGAGATAAATATTGAAAAGATACTAATCAAAACGCATTTGCACTTGTGATGAGGTGAGTGACCATGGCGCAGCACTATGATGGTCTGTCCCACTGTAAACTGGCCCTGGTGTTTGCCATATTGATGGACCTGCTAGGTGTCTCTGCTCTTCTGGTGGGGGTTTTCGCCCCATTAGAGATTAAGGGACAGGACTTTGGGGACCTGTTGGTGTACTCTGGGGCTCTACTGATGCTCATGTCCCTGGGAGGATGGGTCATGTGGTACAGCGGGAACCTTGAGGGCCTGACCTCCAGGAAGGAGCTAGGGGGAACCATGGGTGCCATGGACCGGCTGGCCCGCTCCCTCAGCCGCAGGATACGACTCCCCAGGAGCCACAGCAGCCCCTCATGATGCTTCATGGTCAGGCGTAGGAGAAGGGTGTGGTTGTAGGGGAGGGTCCTCACTGTCTCCATTAGACTATTGGCCCCTGATAGTCAAACTGCCTGGGGGTCTGGGAGCAGTATTGTTGGCATTGAGGGAGTGCTATTAAATGAACCATGCTATGGCCCGTGATGTGAACAGGcaaaagaggggttgggaggaGCACCCTTCTCAAACCTAACAGTAATCTGCGCCGCTCGGTCATGTTGTCATCAAGGCAGCATATGTTCACATTTTCAAACTAGTTTTCAATAGGAAGGCAGATAATGATTGCTTTTGATAAAAATTATTTTTGGTATGTGTAAACACAGAATCCTATTCATTACTCCATGCCCGGTTCCAAAACGAATGTAATCAACGCCAACCCATTTCACCCGGGACAGGAATAAGATTCCGTTtttaagatatatatatttttatagaaCTCCCTCATTCTTTAACCCAAGTTCCACCGCCTCCACAGTGGAAGAGACTTACATACTGATAGTTCACTAGTGTCAATTACAAGATGGAAAAACTGTTGGTCATTGCATTTTATTGTGACTTAACCTTTGCTGAAACACCTGCGGTAGATAACAGAATTGTACACTGTCTGAATAGGATTTTAAACGATCAAGCATGGAGGCTATTCATAGATCACTTGGTTGGTTTGTTTAGGCTTGAATCTGTACAGAATTGATCTTTATATTCATAATAATTAATGTGTTGTGGTTTTCTTTGAATCGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU138313 lncRNA upstream 6517 19518941 ~ 19519677 (+) False G119866
TU138314 lncRNA upstream 6697 19518941 ~ 19519497 (+) True G119866
TU138225 lncRNA upstream 19694 19504866 ~ 19506500 (+) False G119795
TU138226 lncRNA upstream 19694 19504866 ~ 19506500 (+) False G119795
TU138227 lncRNA upstream 19694 19504866 ~ 19506500 (+) True G119795
TU138335 lncRNA downstream 24842 19552715 ~ 19562850 (+) True G119883
TU138367 lncRNA downstream 52948 19580821 ~ 19582374 (+) True G119909
TU138379 lncRNA downstream 63669 19591542 ~ 19594212 (+) False G119916
TU138377 lncRNA downstream 65930 19593803 ~ 19595167 (+) True G119916
TU138354 lncRNA downstream 133034 19660907 ~ 19750224 (+) True G119899
XM_021622737.2 mRNA upstream 44811 19444131 ~ 19481383 (+) False LOC110537022
XM_021622742.2 mRNA upstream 44811 19444131 ~ 19481383 (+) True LOC110537022
XM_036940854.1 mRNA upstream 92563 19392737 ~ 19433631 (+) True LOC110534362
XM_036940852.1 mRNA upstream 178894 19307576 ~ 19347300 (+) True LOC110512786
XM_036961707.1 mRNA upstream 267120 19131905 ~ 19259074 (+) False LOC110503718
XM_021622887.2 mRNA downstream 38006 19565879 ~ 19579511 (+) True LOC110537107
XM_021623004.2 mRNA downstream 69640 19597513 ~ 19599416 (+) True LOC110537165
XM_036941014.1 mRNA downstream 109561 19637434 ~ 19645326 (+) True LOC110537142
XM_036941028.1 mRNA downstream 148783 19676656 ~ 19683059 (+) False LOC110537226
XM_036941018.1 mRNA downstream 148784 19676657 ~ 19683059 (+) False LOC110537226
TU138223 other upstream 18856 19506651 ~ 19507338 (+) True G119794
TU137673 other upstream 268700 19256586 ~ 19257494 (+) False LOC110503718
TU137542 other upstream 564729 18959136 ~ 18961465 (+) False G119245
TU137405 other upstream 853874 18670513 ~ 18672320 (+) True G119160
TU137398 other upstream 890153 18633839 ~ 18636041 (+) True G119153
TU138343 other downstream 148862 19676735 ~ 19683059 (+) True LOC110537226
TU138416 other downstream 174226 19702099 ~ 19703788 (+) True G119952
TU138435 other downstream 240397 19768270 ~ 19778335 (+) False LOC110537243
TU138434 other downstream 247587 19775460 ~ 19778335 (+) False LOC110537243
TU138433 other downstream 247612 19775485 ~ 19778335 (+) True LOC110537243

Expression Profile