RNA id: XM_036940934.1


Basic Information

Item Value
RNA id XM_036940934.1
length 4392
RNA type mRNA
GC content 0.50
exon number 29
gene id LOC110537080
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19527995 ~ 19548154 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACCGTACCCAGCAACACAAACTACCAATTCAACAACAGGTGaatgggcaccaacccccccccccccccctcccctcccctccccagacATCAGCTTCAACTAGAGCAGAGGCAGAGGCATTAAGAAGAATAGGGGGATcgagagggatggagtgtggaGAGAGTATCCTGTGTGGGTCTGGGGAGCTGGATCTGGACCCTGACATTGTGAGTGAAGAGGCCGGGAAACTGTACTCAGaactacagACAGTGATAGAGACCCATGGTGTAGGGGTTGTGGAGTCCCTGGTGCCCATCCTAGTATGGGTCCTGGAGGGTCTGGCCAGCTGCAGAgcccagctcagagagagggaggacgaggccgagagagagaaaggagagagagatgagctgtTGCAGAGATACCAGAGTGAGAAACTactgaggagagagagccaggagCGGTATCTGGAGTTGGATGACCAGATTGAGCAGGAGCGGAGGACgatgaggggaagagagaaggagagagagaggagggaaaaagaACTGGAGAAAAAGGCCAGAGAGCAGGCTGACCAATTGGTGGCCTTGGAGGAGCAGAGGGCTGGACTGGGCAGAGAGTTGAACACACTGAAGCACACTCACAACAAGtTGGTGCTCAGTTATAAGGATCTGCTGGAAAGGAAAAgggatctagagagagagggatctcCACTAAGTAACCATGTGCGCTCCAAGAATTCACAATCTACCCAGGGCCAGTCAGAATCCTGTGTTAGCGGACAGGAGCTAACTGATCGAAGGCCAGAAACGCCTCCTGATTCTGTCCTGTTGGAAGAACCGGTAACCAAGGACGATAGGGTGATTGACATTGTCGTAAAGCCAGACAGAGATGCGTCCTTCATCAATGACATCATAAGCTCCACCCCTGAGCTGGCGAAGTTTCATGGCCTTATGAATGCCAGCACCCCGGTCCGAGCAGACGTCAAAGAGCCAATCAGAGACGAGACCAAGACCAGCATGGAGGAAGAAatgaaggaggtggaggagaaagaggaaggaagagCAAAgcaggagaaagaaggagaggaggaggaagatatggATAGTCTGGAATGGGAGCTGAGGAACACGGAGTCTGTGTTCTCAGAGCTGTCTGAGCTGAGTCAGGAATACATAGAGAGTGTGGACCAGGGGGCCAGTGTCAGAGGCAGCACCGACCAGTTTGAGGAGATTCTTTCTCAGTATGAGGAACTAAAACACACCCATGAGTTAGTGAATGCGGCCCGGAAAGCACTGATCTCTCGTGTGGAGGAGCTGACCAATGAGAGGTCAGCTCTTAAAGTGGAGGTGACTTCCTGCCAGGAGACTGTCACCCGATTGGCGGGAAGAatgaaggagatggaggaggaaactAAGAGACTTCGGAAAGAACTGGAAGCAAATAAATTGGATGATTCCTCTCTGCCCATATCGCTGCGTCGGTTCTCTCGTTCGGAGATGTCCCGTGTTGTCATGGAGAAGAACCAGTATAAGGAGCGTTTGTTTGAGCTGCAGGAGGCTGTGAGACGCAGTCAGACCATTCGGGTCACCCAAGAAGAGaggatcacagagagagagaggactagtgtGTGGAGAAGATTCAACCGTTTGTTTGGCCTGAACAAGAACCCCTTGGTTCCGTCCGCTGCTCTAGCGCTGGCCCTGCCGAcgtccctcactcactcaccaaTGGGGTCTCCACGGAAACTGGCTGTCAGTACAACTCAGACAGATGGTACCTCCCCTGATGCAGCCCTGTCTCCGCGGGTCAGGAGGCGGGAGCTGTACAGAGACATCCGCTCCCATGTCTGGGGAACCCTGGGAAAACGGCAGGTTCATGGCTGGAGCATGCCGCGGTCACACTCACAGGATTCCTCAGAGCCGACCCCTGAGCCCAAAGATGTGCCTGTCCTAGTGCAGCTCAGACTGCTGGACCAGAGAGATTCAACAGCCAAGCTAAACTGTGCTGTTGCTGTTACACCTGAGATCTCAGGCGAGACAACGTGTGCTGTGTGGGTGGTCTCTGGTCCCGCCTCCAGTAGTGATGTCACAGTGATCAACCCTGCACGGTCCAATACGGTTCTGGATCAGTTCAGCCTCCCGCCCACCTCGCCCGCCCTATGCATCTGTGCTGTGCCCCCTACTGGTGAGACCTCAGGAACTGTGTGGATTGGAACTCAGGAAGGAAGTGTGTTAGTCCACTCCGCGTCCACAGCTAGGAGGCGCTGTCTGcagtccatctctctgtctgagggTGTGCACTCTCTCACGTATTCACATGGTCAAGTCATTGCTGGATTAGCCAATGGGACGCTTGCATTCTTCTCGCACAACCCAGGTGGATGGGATCTCCAATCACATGAGGTTTTGCCTCTGGGATCAACTCCACTGCAGCCCATTCGCTGTTGCCTAGCGAAGAGGGCGGGTTTATGGGTAGGATACTGGAATCTGGTTCATGTGGTCAATGTCGAGAATAGAAAAGTGGAGCAAACTTTAACCGTCTCGGAGCGCAGTGAGCAGCAGGTGCGTTTCCTGTGTGCGGCAGGAAGTGGTGTGTGGACGTCCTGCCGGCTAGACCCTACACTCAGGCTTTTTGATTGGTCCACTGGCCGGCCCCTGCAGGATGTGGATCTGACCCCTCTAGTCACCAAAACACTGGgccctgccttcttgtctctctctccgctccaGATCTCGTCCCTCACCTTCATCTCTGGCCGTCTGTGGGTGGGAACAGGAAGTGGCGCCATCTTCTCCATCCCTGTGTCTCTCAGTTCAGAGTCTGCCTCTATACCATACTGCTTTTTGGCGGCAGCACAACTGTGTTACCATGGACACCGCCAGGCTGTCAAGTTCATCATTGCTGCACCTGGCTGTGTGACCAGCTTCTCTACAATAGGAGGCGGTGCTGTAACTCTAGTCTCTACCTCTCAACTCATTCTCAGTGGAGGAGAGGGCTACATCAACTTCCGTATCGGGGACGACGCGAATGACTGCGCACCCGAAGCTGCTCCACTGCGATCAGACCGCAGTCACATGATCATCTGGCAGAGCCCCACCCCCTCCCTGCCCAGCTCCGCCCTTTGACCACACCCACATCCAGTCTAGAATGAGACAAGGAAGGATTAGTCAGAGATGTCATACAAGAGACCAGGAAGTACAAATGGGAGCCATTTTTTAATTGGCTTCATTCACTAGGAGTTCCATTTGGATTTTTGTTCTAGAATTTTGGGATTAAATTAAGACATCACAGCTTAATCCTTCTTGTCTCATTCTGTTATTCAGTTGCTACCCTCATCCTCTTGACTAAACCTTTCACCTATGATTTGACAATCGTTGCTGTGAGATTGGTTATTGTACAATGTTTTGTGTTTCAtatatgggcggcaggtagcctagctgttaagagcgttgggccagtaactcaAAGATCGCTGGTTCGAAAACCCGAGCCGACTAGGTCAAAAATCGGTCCGTGCACAtgatgagcaaggcacttaaccctaattgctcctgtaaatcactctggataagagcgtctgctaaatgactcacatgtaaatatcatcaaatcaaatttatttatatagcccttcgtacatcagctgatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgcaggtgtagaagcactgggaaaaactccctagaaaggccaaaatctaggaagaaacttagagaggaaccaggctatgtggggtggccagtcctcttctggctgtgccgggtggcacATCACTGTAGCAAAGTATTTTACAGTAAGAGTCTTGACTTTTGTTTGGTTAGTTAAGAATGGTTAGGGTTTGTTTTTACCACAAAACATGCACACTCAGATTCATATCATCATTCCATGACGTTTGATCAAACTCGTTTACATTGATACTGAGATGTAGTGTTGAAGCTGCTGGGTTCCTAGTAACTATTGTTGCATAAGACCCTGGCCTTCAGTTCCCATGCTGGGTAAATCTACAGCGTAATTGCACTTtattatcatctctctctctgtgtgtgtgtgtgtcaaatcttTTGAAATTATTGGCTAATCCTCTTGAAGATTCTAGAAAAAAAAAACTGCTAGGATTTCTCCCAGAGAAATTATCTTATGTCTGCTCGTCATGACCTTGTGAAACACAtttaatttttttgttttgttctaaGTTTTCATTTGCAGAGCGATAAGGGAGTGGAAGTCTCAAAAGATACTTAAAGTATTTTATGCAGTATTTgaaagagtgtttgtgtgtgactcaTGTCTGAAAATGTTCATCATAACGACTCTATGCAAGATAATCTATGAAAAATAAACTTTTGTAAATACTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139390 lncRNA downstream 28898 19493355 ~ 19499097 (-) False cacng6b
TU139391 lncRNA downstream 28898 19493355 ~ 19499097 (-) True cacng6b
TU139395 lncRNA downstream 35653 19492071 ~ 19492342 (-) True G120738
TU139393 lncRNA downstream 37747 19489284 ~ 19490248 (-) True G120736
TU139388 lncRNA downstream 39763 19485715 ~ 19488232 (-) False cacng6b
TU139453 lncRNA upstream 70459 19618613 ~ 19619612 (-) True G120786
TU139474 lncRNA upstream 112737 19660891 ~ 19750081 (-) False G120801
TU139475 lncRNA upstream 112737 19660891 ~ 19662171 (-) False G120801
TU139473 lncRNA upstream 113671 19661825 ~ 19750081 (-) True G120801
TU139436 lncRNA upstream 134135 19682289 ~ 19683468 (-) True G120772
XM_036940928.1 mRNA downstream 3163 19514279 ~ 19524832 (-) True LOC110534365
XM_036940908.1 mRNA downstream 14014 19506673 ~ 19513981 (-) True u2af2a
XM_021622771.2 mRNA downstream 14015 19506668 ~ 19513980 (-) False u2af2a
XM_021622797.2 mRNA downstream 14015 19506673 ~ 19513980 (-) False u2af2a
XM_021622816.2 mRNA downstream 14015 19506673 ~ 19513980 (-) False u2af2a
XM_036934601.1 mRNA upstream 6764 19554918 ~ 19556239 (-) False LOC110537104
XM_036934602.1 mRNA upstream 6764 19554918 ~ 19556242 (-) True LOC110537104
XM_021623039.2 mRNA upstream 34893 19583047 ~ 19585670 (-) True LOC110537188
XM_036940955.1 mRNA upstream 43385 19591539 ~ 19595179 (-) True LOC118936409
XM_036941009.1 mRNA upstream 53744 19601898 ~ 19624979 (-) False LOC110537113
TU139386 other downstream 39763 19484337 ~ 19488232 (-) False cacng6b
TU139389 other downstream 39763 19485649 ~ 19488232 (-) False cacng6b
TU138073 other downstream 478965 19048307 ~ 19049030 (-) True G119663
TU137868 other downstream 726608 18799500 ~ 18801387 (-) True G119512
TU137801 other downstream 881332 18637881 ~ 18646663 (-) True LOC110534340
TU139490 other upstream 145535 19693689 ~ 19695564 (-) True LOC118944062
TU139615 other upstream 375944 19924098 ~ 19928460 (-) True LOC110537275
TU139782 other upstream 662914 20211068 ~ 20212367 (-) True G121046
TU139863 other upstream 914528 20462682 ~ 20465789 (-) True LOC110509624
TU139931 other upstream 950742 20498896 ~ 20500587 (-) True G121188

Expression Profile