RNA id: TU139379


Basic Information

Item Value
RNA id TU139379
length 2337
lncRNA type sense_over
GC content 0.47
exon number 11
gene id LOC110537080
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19527995 ~ 19548154 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgaagacactgtaggtAAACACAATATTTACTTCAGAGGTGAAAATACTCACACAGACTGTGGAAGAAGACACAAACCTTAATCTGGTACATACAGTAGATTGTGTGGGATTATTGCAGGATTCCTCAGAGCCGACCCCTGAGCCCAAAGATGTGCCTGTCCTAGTGCAGCTCAGACTGCTGGACCAGAGAGATTCAACAGCCAAGCTAAACTGTGCTGTTGCTGTTACACCTGAGATCTCAGGCGAGACAACGGTGAGACCTCAGGAACTGTGTGGATTGGAACTCAGGAAGGAAGTGTGTTAGTCCACTCCGCGTCCACAGCTAGGAGGCGCTGTCTGcagtccatctctctgtctgagggTGTGCACTCTCTCACGTATTCACATGGTCAAGTCATTGCTGGATTAGCCAATGGGACGCTTGCATTCTTCTCGCACAACCCAGGTGGATGGGATCTCCAATCACATGAGGTTTTGCCTCTGGGATCAACTCCACTGCAGCCCATTCGCTGTTGCCTAGCGAAGAGGGCGGGTTTATGGGTAGGATACTGGAATCTGGTTCATGTGGTCAATGTCGAGAATAGAAAAGTGGAGCAAACTTTAACCGTCTCGGAGCGCAGTGAGCAGCAGGTGCGTTTCCTGTGTGCGGCAGGAAGTGGTGTGTGGACGTCCTGCCGGCTAGACCCTACACTCAGGCTTTTTGATTGGTCCACTGGCCGGCCCCTGCAGGATGTGGATCTGACCCCTCTAGTCACCAAAACACTGGgccctgccttcttgtctctctctccgctccaGATCTCGTCCCTCACCTTCATCTCTGGCCGTCTGTGGGTGGGAACAGGAAGTGGCGCCATCTTCTCCATCCCTGTGTCTCTCAGTTCAGAGTCTGCCTCTATACCATACTGCTTTTTGGCGGCAGCACAACTGTGTTACCATGGACACCGCCAGGCTGTCAAGTTCATCATTGCTGCACCTGGCTGTGTGACCAGCTTCTCTACAATAGGAGGCGGTGCTGTAACTCTAGTCTCTACCTCTCAACTCATTCTCAGTGGAGGAGAGGGCTACATCAACTTCCGTATCGGGGACGACGCGAATGACTGCGCACCCGAAGCTGCTCCACTGCGATCAGACCGCAGTCACATGATCATCTGGCAGAGCCCCACCCCCTCCCTGCCCAGCTCCGCCCTTTGACCACACCCACATCCAGTCTAGAATGAGACAAGGAAGGATTAGTCAGAGATGTCATACAAGAGACCAGGAAGTACAAATGGGAGCCATTTTTTAATTGGCTTCATTCACTAGGAGTTCCATTTGGATTTTTGTTCTAGAATTTTGGGATTAAATTAAGACATCACAGCTTAATCCTTCTTGTCTCATTCTGTTATTCAGTTGCTACCCTCATCCTCTTGACTAAACCTTTCACCTATGATTTGACAATCGTTGCTGTGAGATTGGTTATTGTACAATGTTTTGTGTTTCAtatatgggcggcaggtagcctagctgttaagagcgttgggccagtaactcaAAGATCGCTGGTTCGAAAACCCGAGCCGACTAGGTCAAAAATCGGTCCGTGCACAtgatgagcaaggcacttaaccctaattgctcctgtaaatcactctggataagagcgtctgctaaatgactcacatgtaaatatcatcaaatcaaatttatttatatagcccttcgtacatcagctgatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgcaggtgtagaagcactgggaaaaactccctagaaaggccaaaatctaggaagaaacttagagaggaaccaggctatgtggggtggccagtcctcttctggctgtgccgggtggcacATCACTGTAGCAAAGTATTTTACAGTAAGAGTCTTGACTTTTGTTTGGTTAGTTAAGAATGGTTAGGGTTTGTTTTTACCACAAAACATGCACACTCAGATTCATATCATCATTCCATGACGTTTGATCAAACTCGTTTACATTGATACTGAGATGTAGTGTTGAAGCTGCTGGGTTCCTAGTAACTATTGTTGCATAAGACCCTGGCCTTCAGTTCCCATGCTGGGTAAATCTACAGCGTAATTGCACTTtattatcatctctctctctgtgtgtgtgtgtgtcaaatcttTTGAAATTATTGGCTAATCCTCTTGAAGATTCTAGAAAAAAAAAACTGCTAGGATTTCTCCCAGAGAAATTATCTTATGTCTGCTCGTCATGACCTTGTGAAACACAtttaatttttttgttttgttctaaGTTTTCATTTGCAGAGCGATAAGGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139390 lncRNA downstream 29037 19493355 ~ 19499097 (-) False cacng6b
TU139391 lncRNA downstream 29037 19493355 ~ 19499097 (-) True cacng6b
TU139395 lncRNA downstream 35792 19492071 ~ 19492342 (-) True G120738
TU139393 lncRNA downstream 37886 19489284 ~ 19490248 (-) True G120736
TU139388 lncRNA downstream 39902 19485715 ~ 19488232 (-) False cacng6b
TU139453 lncRNA upstream 84715 19618613 ~ 19619612 (-) True G120786
TU139474 lncRNA upstream 126993 19660891 ~ 19750081 (-) False G120801
TU139475 lncRNA upstream 126993 19660891 ~ 19662171 (-) False G120801
TU139473 lncRNA upstream 127927 19661825 ~ 19750081 (-) True G120801
TU139436 lncRNA upstream 148391 19682289 ~ 19683468 (-) True G120772
XM_036940928.1 mRNA downstream 3302 19514279 ~ 19524832 (-) True LOC110534365
XM_036940908.1 mRNA downstream 14153 19506673 ~ 19513981 (-) True u2af2a
XM_021622771.2 mRNA downstream 14154 19506668 ~ 19513980 (-) False u2af2a
XM_036934601.1 mRNA upstream 21020 19554918 ~ 19556239 (-) False LOC110537104
XM_036934602.1 mRNA upstream 21020 19554918 ~ 19556242 (-) True LOC110537104
XM_021623039.2 mRNA upstream 49149 19583047 ~ 19585670 (-) True LOC110537188
XM_036940955.1 mRNA upstream 57641 19591539 ~ 19595179 (-) True LOC118936409
XM_036941009.1 mRNA upstream 68000 19601898 ~ 19624979 (-) False LOC110537113
TU139386 other downstream 39902 19484337 ~ 19488232 (-) False cacng6b
TU139389 other downstream 39902 19485649 ~ 19488232 (-) False cacng6b
TU138073 other downstream 479104 19048307 ~ 19049030 (-) True G119663
TU137868 other downstream 726747 18799500 ~ 18801387 (-) True G119512
TU137801 other downstream 881471 18637881 ~ 18646663 (-) True LOC110534340
TU139490 other upstream 159791 19693689 ~ 19695564 (-) True LOC118944062
TU139615 other upstream 390200 19924098 ~ 19928460 (-) True LOC110537275
TU139782 other upstream 677170 20211068 ~ 20212367 (-) True G121046
TU139863 other upstream 928784 20462682 ~ 20465789 (-) True LOC110509624
TU139931 other upstream 964998 20498896 ~ 20500587 (-) True G121188

Expression Profile