RNA id: XM_021622887.2


Basic Information

Item Value
RNA id XM_021622887.2
length 1588
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC110537107
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19565879 ~ 19579511 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGACAACAGTCCATCCCTAACACATCACTTCATACTCTCTCTACTGCTGACAAAGGAATCTTTTGAACGGGACAGCTGAGTCAACGTAAGGAAAGGAAGATCCACAGTAACAGAGGATTTTACCCAAAATAAAAGACAGATCGGTGACTCAAAAAGGCACTACTTCAGAGAGCCTTCGCCCATAACTCAGAGATCCCAGTACAGGCTAATACGATGGGGAACGCCAAGAGCAGTGCTATTTCCAAGGAGATCCTGGAGGACCTGAAGCTCAACACCAAGTTCACGGAGAACGAGTTGTGCCAGTGGTACGAGAACTTCCAGAAGCAGTGTCCCACCGGACGCATCTCGCCAGAGGAGTTCGAGACGATCTACGCGCGCTTCTTCCCCGATAGCGAAGCCAAGACCTACGCTCAGCATGTGTTCCGTTCATTCGACACCAACGAGGACGGCACTCTGGACTTCAAGGAATACATCATTGCACTGCACATGACCTCCAGTGGGAAGACGACGAGGAAGCTGGAGTGGGCCTTCTCACTGTTCGACGTGGACAAGAACGGATACATCACCAAGACAGAAGTGGAAGTCATCTGCCAGgcCATCTTTAAGCTAATCCCCAAGGAAGATCTGCCCAAGTTACCGGCCGACGAGAATACACCAGAGAAGAGAGCCAACAAACTGTGGGGATACTTTGAGAAACCAGACAACGaccggTTGGCAGAGGGAGAGTTCATCAAGGGGGTGACGGAGAACGAAAACGCCATGCGTCTCATCCACTACGAACCCATCACTGACTAGTCATCCCTtcttctttccctctttctccttcacacactatttcttcctctcctcctctttgtcATTGTATTCTAGcgttctgtctttctcttctgTGTAAATACTCTTGTATGGTGGTGTCTTAATTGTCTTCACTGTACCTTCTAAGAAAGTAGGGGTTTATGTTGGTTAAAGTATAAAGTATGAGTATGTCAAAGTAAAAGTATGTTAAagtatgtctgtctgtgcatgTATGCCTATTGGATTGAGGCTGTTTTATGAAGGTAGGTGTGATAAATATGAAGGTAGACGGCCACTATTGTAATTAGTGTTTGATGCAATATAAACACGACAGAAACATTGAGGCACAAGTATATTTTATTTGTTTGTATATTGATACAACATCCCTGCTAAATGCTGTTTTCCTATCAGATTGAAGTTACAATAGCTTTTTGGTACTGTGAGATGATTGTGAAAAAGTAATGGTGGTCTAGTGTTTTGCAGTGTCCTGAATACTCATGGACTTGATCACTTGGTGACCATTGCTCAGTCTTTACATTTCATTATTCTAAGAAGCTCTAAATGGTGTTGCTGTAGAAGGAAATTTGAAGTGTGTAAATGTGATAAATGATAACAGTTCAGACACAGGTATTTGGGAAAAGAAAAGATTGAACATCTGTAGAATAACAAACCTTTTTCTCCATTAGGAATTTGCATGGTTGTGAGGGTGGGTTTTAGATTTTATCCTGCAATTAGCTTATTGTTTTAATCAAAGAGTTATACGCTGCAAATGGTGGATTAAACCTTTTCTCA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138335 lncRNA upstream 3029 19552715 ~ 19562850 (+) True G119883
TU138313 lncRNA upstream 46202 19518941 ~ 19519677 (+) False G119866
TU138314 lncRNA upstream 46382 19518941 ~ 19519497 (+) True G119866
TU138225 lncRNA upstream 59379 19504866 ~ 19506500 (+) False G119795
TU138226 lncRNA upstream 59379 19504866 ~ 19506500 (+) False G119795
TU138367 lncRNA downstream 1310 19580821 ~ 19582374 (+) True G119909
TU138379 lncRNA downstream 12031 19591542 ~ 19594212 (+) False G119916
TU138377 lncRNA downstream 14292 19593803 ~ 19595167 (+) True G119916
TU138354 lncRNA downstream 81396 19660907 ~ 19750224 (+) True G119899
TU138347 lncRNA downstream 104282 19683793 ~ 19685529 (+) True G119893
XM_021622866.2 mRNA upstream 37960 19526163 ~ 19527919 (+) False LOC110537095
XM_021622737.2 mRNA upstream 84496 19444131 ~ 19481383 (+) False LOC110537022
XM_021622742.2 mRNA upstream 84496 19444131 ~ 19481383 (+) True LOC110537022
XM_036940854.1 mRNA upstream 132248 19392737 ~ 19433631 (+) True LOC110534362
XM_036940852.1 mRNA upstream 218579 19307576 ~ 19347300 (+) True LOC110512786
XM_021623004.2 mRNA downstream 18002 19597513 ~ 19599416 (+) True LOC110537165
XM_036941014.1 mRNA downstream 57923 19637434 ~ 19645326 (+) True LOC110537142
XM_036941028.1 mRNA downstream 97145 19676656 ~ 19683059 (+) False LOC110537226
XM_036941018.1 mRNA downstream 97146 19676657 ~ 19683059 (+) False LOC110537226
XM_036941027.1 mRNA downstream 97146 19676657 ~ 19683059 (+) False LOC110537226
TU138236 other upstream 37219 19526194 ~ 19528660 (+) True LOC110537095
TU138235 other upstream 38006 19526194 ~ 19527873 (+) False LOC110537095
TU138223 other upstream 58541 19506651 ~ 19507338 (+) True G119794
TU137673 other upstream 308385 19256586 ~ 19257494 (+) False LOC110503718
TU137542 other upstream 604414 18959136 ~ 18961465 (+) False G119245
TU138343 other downstream 97224 19676735 ~ 19683059 (+) True LOC110537226
TU138416 other downstream 122588 19702099 ~ 19703788 (+) True G119952
TU138435 other downstream 188759 19768270 ~ 19778335 (+) False LOC110537243
TU138434 other downstream 195949 19775460 ~ 19778335 (+) False LOC110537243
TU138433 other downstream 195974 19775485 ~ 19778335 (+) True LOC110537243

Expression Profile