RNA id: XM_021623039.2


Basic Information

Item Value
RNA id XM_021623039.2
length 1824
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC110537188
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19583047 ~ 19585670 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaggaAATATAATATTCTACTCTCCCCAGAGAGCCCAACTCAGAACCCATACAACAGAACCCTGTCTCCCCAGAGGAAATATAATATTCTACTCTCCCCAGAGAGCCCAACTCAGAACCCATACAACAGAACCCTGTCTCCCCAGAGGAAATATAATATTCTACTCTCCCCAGAGAGCCCAACTCAGAACCCATACAACAGAACCCTGTCTCCCCAGAGGAAATATAATATTCTACTCTCCCCAGAGAGCCCAACTCAGAACCCATACAACAGAACCCTGTCTCCCCAGAGGAAATATAATATTCTACTCTCCCCAGAGAGCCCAACTCAGAACCCATACAACAGAACCCTGTCTCCCCAGAGGAAATATAATATTCTACTCTCCCCAGAGAGCCCAACTCAGAACCcaaacaacataaccctgtccccCCAGAGGAAATATAACATTCTACTCTCCCCAGAGAGCCCTACTCAGAACCCATACAACAGAACCCTGTCTCCCCAGAGGAGAGATGAACTGGCTAAGATCCGCCAGAGACAGTTGGACAATGCTGTCCACTACAtctgggagacaggagaggacaagtaCACCTTCAGATACTTCCACACGGGCTTCTGGGAGAGTTGTGAGAAACACGTTGATGGTGAGAAGTGTCGCAGCTTTATTGAGCTGACTCCTGGAGAAACACaaggtgtGTTATGGCTATCGGTGATATCTGAGTTCACTTACATCGGTCTATTGGGAATGGGCTTTCTGTTGATGTGGTTGGAGTTGTTGTGTTCCCATAAGGAGATACACGCTCTCAAAATCAACGCCTATGCTGCCATCTGCACCGTACTGTCAGgTCTGATGGGGATGGTGGCCCACATGATGTACACCACAGTGTTCCAGATGACTGTCATCGTTGGCCCTAAAGACTGGAGGCCTCAGACCTGGGACTACGGCTGGTCATTCGCCCTGGCGTGGATCTCCTTCAGCTGTTGTATGGGAGCTGCAGTCTTCACCCTCAACTCTTACACCAAGACCATCATCGAGCTGCGCCACAAACAGAGGCTCCGATTGGAGGAGACCCGCGCCGCCAGCCACGCCCCTCCATATGATGAGGTGGTCCCCGGGGGCGGGCTCTACTCTGTCAGCGGCCTATTGCAGTGCCCAGACGGGATGATTGACGTGGCGTGGGCGCCTGACGGGACTGTGATGGGGGTGGGGAACGGGGATGTACCAACTCTTGTGTTGCTAGGAGGATGTGGGCCAGAGGGCTGTGAGGACTGtgaaagagagatggatgagaTGGAGGAGGCCATGGAGAGGGAAAGAGCTGATTCGCCCTGTTAATAAgtgatgggtggggctaaagagaacagaggaggactaTGGGTAATGTAGTCACATTACAGGTACAGTATATGCACCTTGAGCTCTCAAGATGGAAAGACTGCGACAGAGAAAGACTGGGACAGAGAAAGACTGAGACAAGAAagactgagacagagaaagagtgagacagaACTTGATGGACATGGGACACATGAACTGTGTTGGCTGTAAGAGCTACAGTATCCCCTCTTTGACATTGAACAGAGATCACCTTGACATACATGGTTCGGGCTAACACTCCTCACATTGTCATTCATTAATACAATAGTGCCTAATGGTAAGGGATTGTTATACAGTTTtgttatacagtatacagtatgtatgtaaaTGTATCCATGTTAGAAATAGTTTTACCATAAGAATCCAATACTTTCTGAACTTTGTAAAACATGCTTTTCACTTCGTCTGAATGGGTCCCGTTCTGAATCTGTAAAATAAACAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139405 lncRNA downstream 8300 19519645 ~ 19574747 (-) True G120745
TU139378 lncRNA downstream 49149 19528134 ~ 19533898 (-) False LOC110537080
TU139379 lncRNA downstream 49149 19528134 ~ 19533898 (-) True LOC110537080
TU139390 lncRNA downstream 83950 19493355 ~ 19499097 (-) False cacng6b
TU139391 lncRNA downstream 83950 19493355 ~ 19499097 (-) True cacng6b
TU139453 lncRNA upstream 32943 19618613 ~ 19619612 (-) True G120786
TU139474 lncRNA upstream 75221 19660891 ~ 19750081 (-) False G120801
TU139475 lncRNA upstream 75221 19660891 ~ 19662171 (-) False G120801
TU139473 lncRNA upstream 76155 19661825 ~ 19750081 (-) True G120801
TU139436 lncRNA upstream 96619 19682289 ~ 19683468 (-) True G120772
XM_036934602.1 mRNA downstream 26805 19554918 ~ 19556242 (-) True LOC110537104
XM_036934601.1 mRNA downstream 26808 19554918 ~ 19556239 (-) False LOC110537104
XM_036940934.1 mRNA downstream 34893 19527995 ~ 19548154 (-) False LOC110537080
XM_036940928.1 mRNA downstream 58215 19514279 ~ 19524832 (-) True LOC110534365
XM_036940908.1 mRNA downstream 69066 19506673 ~ 19513981 (-) True u2af2a
XM_036940955.1 mRNA upstream 5869 19591539 ~ 19595179 (-) True LOC118936409
XM_036941009.1 mRNA upstream 16228 19601898 ~ 19624979 (-) False LOC110537113
XM_036940996.1 mRNA upstream 16265 19601935 ~ 19615718 (-) False LOC110537113
XM_036940965.1 mRNA upstream 16265 19601935 ~ 19625051 (-) False LOC110537113
XM_036940971.1 mRNA upstream 16265 19601935 ~ 19625051 (-) False LOC110537113
TU139386 other downstream 94815 19484337 ~ 19488232 (-) False cacng6b
TU139389 other downstream 94815 19485649 ~ 19488232 (-) False cacng6b
TU138073 other downstream 534017 19048307 ~ 19049030 (-) True G119663
TU137868 other downstream 781660 18799500 ~ 18801387 (-) True G119512
TU137801 other downstream 936384 18637881 ~ 18646663 (-) True LOC110534340
TU139490 other upstream 108019 19693689 ~ 19695564 (-) True LOC118944062
TU139615 other upstream 338428 19924098 ~ 19928460 (-) True LOC110537275
TU139782 other upstream 625398 20211068 ~ 20212367 (-) True G121046
TU139863 other upstream 877012 20462682 ~ 20465789 (-) True LOC110509624
TU139931 other upstream 913226 20498896 ~ 20500587 (-) True G121188

Expression Profile