RNA id: XM_036941014.1


Basic Information

Item Value
RNA id XM_036941014.1
length 1997
RNA type mRNA
GC content 0.51
exon number 4
gene id LOC110537142
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19637434 ~ 19645326 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgagagagtgtgtgttagggacagagagagggagggaggtaggaggggagagcaggagagagggaggagggggatagagagaggggaggagacagagagtgagtgaagTGGTGGTCtctcagggagagagacaaggTAAGTACCAAGGTCCCGAGGGATAGGAAGGTAGATATACCTCAGTGTCTGCTATAAAAACTACCAGCGCATGGACCTGCAGAGACAAAGTAACAATAACAGCCACTTGTGCTCCGATACAGATCTCCTAAAGAGTAGATCACCAGTGAAAGACAATAGTTAGGAACAGAACAGCAGCAGACCAACAGCAGACCTACAAAGGGTCAGGAAGTTGTTGAAGTCTATGTCGATGCTGACGAGGACCCAGACAAGCTGAACAGAGACAGACGTTCCCACTTGAGAAAACTCTACAATGACAGCTGCAGCTCAGGAACTGGACGAGCTATGTTTCCTCTCAGCCCAGTCCATGTCCACTCTGGAGACCTCCAACCACTTCCAGATGGTCAAGCTGCTGGGAGAGGGATCCTACGGCAAGGTCATGCTGGCCGTCCACAAGAAGAGAGgCACTCCCATGGCTCTGAAGTTCTTCCCCCGCCAGTCCACATCCCTCTTCTCTTTCCTGCGTGAATACAACCTCTCCCTTTCTTATtgcactcatccctctctcacccgGGCCCTGGGTATCTTCTTCTCCACCCCCTGCTACTATGTCTTCGCCCAGCAGGCTGGTCTCTATGGAGACCTCTACAGTGTCATCGTGTCAGAGgtggGTGTAGATGAAGAGTGTGTCCAGAGGGTGATGTCTCAGCTGAGTGGTGCCGTCTCATACCTCCACTCCATGGGCTTCGTCCACCGGGACATCAAACCAGAGAACATCTTCCTGTGTGACCGTGCCTGTCGCTGGGTCAAACTGGGTGACTTCGGCCTGGCCCGCCCCACTGGCTGCACCGTCCGCGCCGTCTGGTACGACTCGCCCTTCTGCACGCCTGAGGTGGAGCAGGCCAAAGAATCCGAGAAagtgagggagcagagagaggaggatggagaggaggaggagaacatttGGATCACAGTGGAGACCACTATAGACAGCTGGGCCCTGGGCGTGCTGGTCTACTGCCTGCTGACGGGATGCTTTCCCTGGGAAGAGACAACCCACGATGACCCCGCCTACCGGAGGTACAAGGAGTGGTACGAccgcgagacggagagggaggaaaggagcgaGAGGCTGAGAGGGGAAAAGGAAGTAATTTGGTGCGAAGGTGAAAGTGAAAAGGACAATATCCTGAGCCTGGAGAAGAATCAGAAGTTGAACCCTATGGCCCCACAGTTTGAAGGCTTCAGCCCACTGGTGATGTCTCTTTTCAGGGAGCTGCTTAACCCACGGCCCAGTCTTCGAGGAGGCCCTGATGAGATCCTCAGCTACCTGGGTGGGCCCTGGttgattgagacagagagagaggagaagaggaaagcagaggaggtagagaaggaggccAGGAAAATAAGAGAGGCAGGAAcggtggaggaagggagggagagggagggaagaggggagagataaaGTGTTTCATACTAGACAGGTTCGAGAATTTTTAAGATGTACTGTACATTTTGGAAGACAATATTTGCTTTATAGAGGTTGATATTCTGAATATTTTTCTGAACATTTCTTACTCTGTATTGATAGAATTGAGACAACTGTATTTTGATATTGCTGTATGTTTTACCTTGTAATAGTTCTCTACAGTGTAATGCAACTTaatattatatgtgtgtgtgagcgtgcatgtGCCATACCTGCCTGTGTATGTGCGTGCTTGAACATGATCGTGAGTGTGCATGTGGGCTTAGGGGCAGCTAGCCTCTTAAGAGAATACATGAATTAGTTCTCCTTCAACACACAGGCAGTATTATAATGATCACTCTATGACACTTTATGTTGTAAAAATATCTGAATAAACCAGTTTGTATTTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138377 lncRNA upstream 42267 19593803 ~ 19595167 (+) True G119916
TU138379 lncRNA upstream 43222 19591542 ~ 19594212 (+) False G119916
TU138367 lncRNA upstream 55060 19580821 ~ 19582374 (+) True G119909
TU138335 lncRNA upstream 74584 19552715 ~ 19562850 (+) True G119883
TU138314 lncRNA upstream 117937 19518941 ~ 19519497 (+) True G119866
TU138354 lncRNA downstream 15581 19660907 ~ 19750224 (+) True G119899
TU138347 lncRNA downstream 38467 19683793 ~ 19685529 (+) True G119893
TU138429 lncRNA downstream 65156 19710482 ~ 19713435 (+) True G119955
TU138462 lncRNA downstream 113132 19758458 ~ 19758725 (+) True G119986
TU138497 lncRNA downstream 174646 19819972 ~ 19821386 (+) False G120018
XM_021623004.2 mRNA upstream 38018 19597513 ~ 19599416 (+) True LOC110537165
XM_021622887.2 mRNA upstream 57923 19565879 ~ 19579511 (+) True LOC110537107
XM_021622866.2 mRNA upstream 109515 19526163 ~ 19527919 (+) False LOC110537095
XM_021622737.2 mRNA upstream 156051 19444131 ~ 19481383 (+) False LOC110537022
XM_021622742.2 mRNA upstream 156051 19444131 ~ 19481383 (+) True LOC110537022
XM_036941028.1 mRNA downstream 31330 19676656 ~ 19683059 (+) False LOC110537226
XM_036941018.1 mRNA downstream 31331 19676657 ~ 19683059 (+) False LOC110537226
XM_036941027.1 mRNA downstream 31331 19676657 ~ 19683059 (+) False LOC110537226
XM_036961714.1 mRNA downstream 53165 19698491 ~ 19699519 (+) True LOC118944064
XM_021623137.2 mRNA downstream 130103 19775429 ~ 19778331 (+) False LOC110537243
TU138236 other upstream 108774 19526194 ~ 19528660 (+) True LOC110537095
TU138235 other upstream 109561 19526194 ~ 19527873 (+) False LOC110537095
TU138223 other upstream 130096 19506651 ~ 19507338 (+) True G119794
TU137673 other upstream 379940 19256586 ~ 19257494 (+) False LOC110503718
TU137542 other upstream 675969 18959136 ~ 18961465 (+) False G119245
TU138343 other downstream 31409 19676735 ~ 19683059 (+) True LOC110537226
TU138416 other downstream 56773 19702099 ~ 19703788 (+) True G119952
TU138435 other downstream 122944 19768270 ~ 19778335 (+) False LOC110537243
TU138434 other downstream 130134 19775460 ~ 19778335 (+) False LOC110537243
TU138433 other downstream 130159 19775485 ~ 19778335 (+) True LOC110537243

Expression Profile