RNA id: TU138343



Basic Information


Item Value
RNA id TU138343
length 1156
RNA type TUCP
GC content 0.48
exon number 7
gene id LOC110537226
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19676656 ~ 19683059 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aaAATATTCAAAACAAAGGACGCTTTTGGACGACAGGAAAAGTTCTCGTAAACATCCAGCTCTTACAAGGATGGGCAGTCTTCCAATCGCCCTGCTCCTCTGCGGTTTCCATGCCCTCACAGCTGTAGCCCAAGCCCCGCAGGCTGAGGCGGAACTCCACAGAGGTGACTGGAATGAAGAGGAGGctttggtgtctgtctctaccctaccGCCTGACTGTAGGGAAGAGACGTACCCCTGTACCAGGATGTACTCTGTCCACCGGCCCATCAAGAGATGCATCCACTCCCTCTGCCTTTACAGCCTCCCTCGTGTCTATGTGATCAACAAGGAGATATGTGTTAGAACTGTCTGCCAACAGGATGAGTACCTGAAGGCTGAACTCTGCAGGGAGCGGTCCGGCTGGCCCAAACGCTTCCAGAGGTCAACCACCAATAAGAAACGCTGTCACAATCGCCGCAGCAACCCCAAAACCTGGCAAAACAAGGCCTGATGGGCCCAAGATggaggagatggaaggaggggcggaggaggaaggagagaaagagagaaggaggaggaaggagtaggAGGGAGGACACCCTTGGAGACAGAACACTGGGTTGTCTCCATAAAAAGACCCCGAAACACCATAAATTCACCGCTCAACACCTGGTGCTAGCCTGTGCCTtaacacacaaccacaaccatgcacacatacacacacacacaatatatatatatatatatatatataaaacacagtccacGTGACTCCAGTTAAGAACAGTCTGAGTCATATTTCTCAGTTATTCTATTAGCCCTGTGTTTTATTAGAACTGTATGTGAATATCAGGGGAGAAATCACTCCCCACAGATTGGACCTGTGTTTTAATAGAACTGTCTGTGAATATCAGGGGAGAAATCACTCCCCACAGATTGGACCTGTGTTTTAATTGACACGGATCATGTTCTGTGCCGTTGCGGGCTGTATCATACTGTTCAGATGGAACGCTGTTGAGTTCCTGTAGTTGTGTACTGTAGAGACAGTCTGAGAACAAAGTATCCACTCTGTCATTGCTGACACCTTATTGTAAAGCACTCTATCACAATCCAATACCAAAGCAGTGCAATACTACAAAGCAGTGCAATACTACCCAATAAAATGTCATTCATT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU138377 lncRNA upstream 81568 19593803 ~ 19595167 (+) True G119916
TU138379 lncRNA upstream 82523 19591542 ~ 19594212 (+) False G119916
TU138367 lncRNA upstream 94361 19580821 ~ 19582374 (+) True G119909
TU138335 lncRNA upstream 113885 19552715 ~ 19562850 (+) True G119883
TU138313 lncRNA upstream 157058 19518941 ~ 19519677 (+) False G119866
TU138347 lncRNA downstream 734 19683793 ~ 19685529 (+) True G119893
TU138429 lncRNA downstream 27423 19710482 ~ 19713435 (+) True G119955
TU138462 lncRNA downstream 75399 19758458 ~ 19758725 (+) True G119986
TU138497 lncRNA downstream 136913 19819972 ~ 19821386 (+) False G120018
TU138496 lncRNA downstream 137558 19820617 ~ 19821386 (+) True G120018
XM_036941014.1 mRNA upstream 31409 19637434 ~ 19645326 (+) True LOC110537142
XM_021623004.2 mRNA upstream 77319 19597513 ~ 19599416 (+) True LOC110537165
XM_021622887.2 mRNA upstream 97224 19565879 ~ 19579511 (+) True LOC110537107
XM_021622866.2 mRNA upstream 148816 19526163 ~ 19527919 (+) False LOC110537095
XM_021622737.2 mRNA upstream 195352 19444131 ~ 19481383 (+) False LOC110537022
XM_036961714.1 mRNA downstream 15432 19698491 ~ 19699519 (+) True LOC118944064
XM_021623137.2 mRNA downstream 92370 19775429 ~ 19778331 (+) False LOC110537243
XM_036941070.1 mRNA downstream 113335 19796394 ~ 19828604 (+) False LOC110537251
XM_036941062.1 mRNA downstream 113336 19796395 ~ 19828604 (+) True LOC110537251
XM_036941059.1 mRNA downstream 150330 19833389 ~ 19892695 (+) False LOC110537257
TU138236 other upstream 148075 19526194 ~ 19528660 (+) True LOC110537095
TU138235 other upstream 148862 19526194 ~ 19527873 (+) False LOC110537095
TU138223 other upstream 169397 19506651 ~ 19507338 (+) True G119794
TU137673 other upstream 419241 19256586 ~ 19257494 (+) False LOC110503718
TU137542 other upstream 715270 18959136 ~ 18961465 (+) False G119245
TU138416 other downstream 19040 19702099 ~ 19703788 (+) True G119952
TU138435 other downstream 85211 19768270 ~ 19778335 (+) False LOC110537243
TU138434 other downstream 92401 19775460 ~ 19778335 (+) False LOC110537243
TU138433 other downstream 92426 19775485 ~ 19778335 (+) True LOC110537243
TU138545 other downstream 241013 19924072 ~ 19928477 (+) True G120059

Expression Profile