RNA id: TU138433


Basic Information

Item Value
RNA id TU138433
length 516
RNA type TUCP
GC content 0.49
exon number 4
gene id LOC110537243
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19768270 ~ 19778335 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGTCTTCCGGTGAGAGAGGACATCAATCATACCAGAGAGGACACAAGAAACAGTCCAAGTGTTGACATAGTGAGACTGCCAGCTAGCCAGCATGTCTGACGTTATTGAGGAGAAGATAAAGAACTACAGGACGGCTCCCTTCGACGCCCGCTTCCCCAACACCAACCAGACCCGCAACTGCTTTCAGAACTATCTggACTTCCACAGGTGCAACAAAGCTTTGTCAGACAAAGGCCAGGATGTGGCTCCCTGTGACTGGTACCAGAGGGTCTACAAGAGTATCTGTCCCATGAGCTGGGTCGCCAAGTGGGACGACCAGATAGAGGCCGGAAGCTTTCCCGGAAAGATCTAAAATGGCTGACCTCAGGACTATCTGTTAGCCACACCTTCAACTTTGATCCCTGTAGTGTGACTAAGGACATGTGTTGACCACGTACCACACCATTCTTAATGTTATTAACAGTGTTACTTATGTTACAAGCACTTAATAAAAATGCGCACCCGTTTTGAACCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138462 lncRNA upstream 16760 19758458 ~ 19758725 (+) True G119986
TU138354 lncRNA upstream 25261 19660907 ~ 19750224 (+) True G119899
TU138429 lncRNA upstream 62050 19710482 ~ 19713435 (+) True G119955
TU138347 lncRNA upstream 89956 19683793 ~ 19685529 (+) True G119893
TU138377 lncRNA upstream 180318 19593803 ~ 19595167 (+) True G119916
TU138497 lncRNA downstream 41637 19819972 ~ 19821386 (+) False G120018
TU138496 lncRNA downstream 42282 19820617 ~ 19821386 (+) True G120018
TU138511 lncRNA downstream 71164 19849499 ~ 19850437 (+) True G120031
TU138515 lncRNA downstream 71401 19849736 ~ 19850902 (+) True G120032
TU138531 lncRNA downstream 101631 19879966 ~ 19881716 (+) True G120048
XM_036961714.1 mRNA upstream 75966 19698491 ~ 19699519 (+) True LOC118944064
XM_036941028.1 mRNA upstream 92426 19676656 ~ 19683059 (+) False LOC110537226
XM_036941018.1 mRNA upstream 92426 19676657 ~ 19683059 (+) False LOC110537226
XM_036941027.1 mRNA upstream 92426 19676657 ~ 19683059 (+) False LOC110537226
XM_036941014.1 mRNA upstream 130159 19637434 ~ 19645326 (+) True LOC110537142
XM_036941070.1 mRNA downstream 18059 19796394 ~ 19828604 (+) False LOC110537251
XM_036941062.1 mRNA downstream 18060 19796395 ~ 19828604 (+) True LOC110537251
XM_036941059.1 mRNA downstream 55054 19833389 ~ 19892695 (+) False LOC110537257
XM_036941053.1 mRNA downstream 61546 19839881 ~ 19892697 (+) False LOC110537257
XM_036941057.1 mRNA downstream 61546 19839881 ~ 19892698 (+) True LOC110537257
TU138416 other upstream 71697 19702099 ~ 19703788 (+) True G119952
TU138343 other upstream 92426 19676735 ~ 19683059 (+) True LOC110537226
TU138236 other upstream 246825 19526194 ~ 19528660 (+) True LOC110537095
TU138235 other upstream 247612 19526194 ~ 19527873 (+) False LOC110537095
TU138223 other upstream 268147 19506651 ~ 19507338 (+) True G119794
TU138545 other downstream 145737 19924072 ~ 19928477 (+) True G120059
TU138600 other downstream 240364 20018699 ~ 20024983 (+) False casp2
TU138669 other downstream 367398 20145733 ~ 20157110 (+) True zyx
TU138728 other downstream 392747 20171082 ~ 20171381 (+) True G120211
TU138741 other downstream 401073 20179408 ~ 20184625 (+) False LOC110537348

Expression Profile