RNA id: XM_036941070.1


Basic Information

Item Value
RNA id XM_036941070.1
length 3749
RNA type mRNA
GC content 0.46
exon number 11
gene id LOC110537251
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19796394 ~ 19828604 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTACTTGACCCCAGATTTCTTCTACACACCATCTTCATCTTCATTAAATTCCAATTCAGCCTCTGCTTTCTTCATTCTCTtccacctcttcttcctctttttcctcctccattcctccttcgAAATCCACCTTTCCGTGTACCTGTCCCAATATTTTTCTCCTCCTGGCTTCGCTAGCAGCCCAGTTGCATCCCGATGTAACTCCATCTCATAATTGTCTTTCTCAACTCGAAAACGTGTCTTTAAAGGGCCCGACATTTTGAGAGAATGAGCAGTGGCACAACTCCCAAACAGCCTACACTCTCCTCGAACGTTCTCTCAGACAGGATCACACTGCCTGCCAGGCGCTGTTCAGGGCTTAAATGCCCCACGAGCGCAATTATTTGGTAAAAAAAACCTGCGCTTTTACGTGTAGGAGCAAGCATGACCAGAGACTACCAGGGCGCGTAGGATGTCGGCAAAGCTAGGAAACGTGCGGACAGACTTGTGCCACTATCGTATATAAATcggtgacgagagagagaggggagcaagtGCTAGACATTCTTCTCAGCATACAGTTCTAGATAACGGACTAAAGGGAGATACGATAACCTATTTGGCACCAAACAGGAATTACGGTGGTTCCTCTGCAAACTGCTGTTTGGACTGCCTACATTGTTCACCTTGCAAATGAGAGCCTAGTTTTGGAAGGAGAAACTAAAACAAACTATTTAACTTGGAGTTATTTGATCTTTCCTGAGGAGGTCAGACAGTGAAACATAATTCAAGATGGAGAATATGGAAGCTGGGAAGAAGAAGGGAGTGACCTGTTACCTCCTCTACTGCATCACTACAGCCGTCATTGGCTCCCTGCAGTTCGGATACAACACTGGAGTAATCAATGCCCctgagcagAAACTGCGACGGTTCTTCCAGAATGTGTCTATGGATCGTTATGGAGAACCCTTCTCCTCTGGGACTAACACCATGGTTTGGAGCTTCGCTGTGGCCATCTTCAGTGTGGGGGGCATGGTTGGGTCCTTGTCTGTGGGGGTCATGGTGGACAGGTTTGGGAGgcGGAAGTCCATGCTCCTGGCCAATGTTCTGGCCCTTCTGGGTGGAACTCTGATGGGTCTGTCCAGCCTGTGTAAGTCCTTTGAGATGGTCATCATTGGCAGGCTGGTCATTGGCGTGTTCTGTGGCCTGTGTACGGGACTGACGCCCATGTATGTGGGAGAGCTGGCCCCCACGCACCTCAGGGGGGCCTTCGGCACCCTCCACCAGCTGGGAGTGGTCATTGGCATCCTAGTGGCAcaggTCTTTGGTCTGGAGTTTCTGCTGGGGTCAGACTCCCTGTGGCCCCTCCTGCTGTCCCTGACGGCCATCCCTGCTGTGGTGCAGAGCATCATGTTGCCTTTCTGCCCAGAGAGCCCCCGCTACCTCCTCATCAGCCTAAACCAGGAGGAGGAGGCTCGCAAAGCCCTGGTGCGTCTGCGTGGCTGTGAGGACGTAAGTGATGACATCCAGGAGATGAAGGAAGAAGGGATGAAGATGGGCATGGAGAAGAAGGTCACTATTCCAGAACTCTTCCGCTCGCCAGCCTACCGTCAGCCAATCATCATCGCCATCATCCTGCAGCTCTCCCAGCAGCTCTCTGGCATCAACGCGGTATTCTACTATTCAACAGGTATATTTGACACTGCCGGGGTGACCCAGCCCATCTACGCCACTATAGGAGCTGGGGTGGTCAACACTCTATTCACAGTGGTGTCTCTCTTTCTGGTGGAGAGGGCAGGACGAAGGACCCTGCACCTTATCGGATTGGCTGGAATGGCTGTCAGTGCTCTGCTCATGACCATCTCCCTCTCATTGGTGAAGACCAACCCGTCTCTGAGCTACCTGGCCATCGTGGCGGTGTTTGCCTTTGTGGCCAGTTTTGAGATGGGTCCGGGTCCTATCCCATGGTTCATAGTTGCTGAGTTGTTCTCCCAGGGGCCTCGGCCTGCAGCTATGGCCGTCGCCGGCTGCTCCAACTGGACCGCCAACTTCCTGGTCGGGCTGGGCTTCCCCAAACTGGAGgAGCTGTGTGGTCCTTACGTCTTCATCATCTTCATGATCTTCCTCATATTCTTCATCGTCTTCACCTACTTCAAAGTCCCGGAGACCAAGGGGCGGACCTTTGACGACATTGCCAAAGGATTCGCCGGCACTGCAGGAACCCAATCTCCTCCCCCAGAGGGTATGGTCACCCTGCCCATCTCCCCGACAACGGAGAAAGTTCCAATGGTTGAGTTTCCGacggaagagaaggagaagaagggatTGTCAGCGAATCCGTAGATAGTGGAACAGTTAGAGAACAGGGTTACAGGGTTAGACAAGCCCCTTGTGCATAGATACTGTAATGTAGTTTAAGTTCAAAACAAAACTTTTTTTTATCCTTTTGAGGTTGAATTGGACTTTTAAAGTGCAGGACTAGCGATATGCACTGTTATGGAAAGGAGCTTCCATATGAAGTAGCAGCTTAGTGTCGGGTGTGTGTATGGCGTGTGTTGGGAATAGGGTCGGGGATGATAATGCAGGCATCATGAGAGAACGTGTCAAAGAGGATTTATGTTTACTTtgtgtcattatgtgtgtgtgtgtgtgtgtgtcttcagtcattttcttttaaacTGCCTAAAGTATTTATTACTGTAAGTTATTAATGATAATTTGTAATGATCTTTTACCAATGCCCAAGTAATTTATGACATTTATTTTTAGGTGACTTACCTCATAGAGGTAATCATTAATTAATCAATGACAATTTTTTATGGTACTTTTTAACGATTGACATCACAATAAAAACCTTTATAGTATTAGCATTTAAGAGGATAAACATTCCAACACATATGTTCAGTAATTAACTTCCCGTATTGTCCTTCACTTGGTTGAAagggaatttgttcttaactgacttgccttgttaaataaaaaatgaatgcaTCAGATAGGGGTAGAGGTAATATATGGAGCAAAGCCATTCAACCCCTATGGAACAATGCCATTCAACTAGTACTTGGAAAGTCTACATTGACCTCAGTATGATGTATAGTGGCTGCAGTGGAGTGAGATCTAACAACGTGAGCAGTGTTTGCTTTGTGTGTGAAGActtctatatattctatatatcatAGAATTTATCATAGACTAGATATGAATGTGAATGTCTAGTCATTTTAACAACCTACCAAGTGTGAAGTATATGATCACAGTAGAAGACGATATATGATTTGTTAGGAACATAGATTTGTTAGGAACATCCTGAAAATAGTTGTTCCAACAAGGGGTCTACCGTTAAATGAGAGTATATACCAACCCTAGAGTAATAGTATTTATTGTGACAACAACAGTGTGTAAAAATCATGACATTTCAGTGGTGTAATACTGTATTGTGATTGTGGAGTCTTGTGTAGGTTTTGACCAGGTTAGTTGTTGTAAGTTATTTCTACTATATTGTAGCTAGTATTCCATAATGATGGCAAATATCTTCTCTGTGTCTCGTACATTATCTGATAATGCATTTTTGTTGTATTATTACTCATGTGATGTTGATACTCATTGATAAGTGAGCACTTTTTTACCTTTTGGCCTAAAACAACATTTGACCTATCATCACTTTGGCAATCTGGCTTTTCTTCGATGGTTGTGAATGTGGTgtgtacatatacagtatgttaatAAGTGTCTGTTACAAAATACATTCCTGTTATGATAGCTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138462 lncRNA upstream 37669 19758458 ~ 19758725 (+) True G119986
TU138354 lncRNA upstream 46170 19660907 ~ 19750224 (+) True G119899
TU138429 lncRNA upstream 82959 19710482 ~ 19713435 (+) True G119955
TU138347 lncRNA upstream 110865 19683793 ~ 19685529 (+) True G119893
TU138377 lncRNA upstream 201227 19593803 ~ 19595167 (+) True G119916
TU138511 lncRNA downstream 20895 19849499 ~ 19850437 (+) True G120031
TU138515 lncRNA downstream 21132 19849736 ~ 19850902 (+) True G120032
TU138531 lncRNA downstream 51362 19879966 ~ 19881716 (+) True G120048
TU138543 lncRNA downstream 95468 19924072 ~ 19924604 (+) False G120059
TU138544 lncRNA downstream 95468 19924072 ~ 19924604 (+) False G120059
XM_021623137.2 mRNA upstream 18063 19775429 ~ 19778331 (+) False LOC110537243
XM_036961714.1 mRNA upstream 96875 19698491 ~ 19699519 (+) True LOC118944064
XM_036941028.1 mRNA upstream 113335 19676656 ~ 19683059 (+) False LOC110537226
XM_036941018.1 mRNA upstream 113335 19676657 ~ 19683059 (+) False LOC110537226
XM_036941027.1 mRNA upstream 113335 19676657 ~ 19683059 (+) False LOC110537226
XM_036941059.1 mRNA downstream 4785 19833389 ~ 19892695 (+) False LOC110537257
XM_036941053.1 mRNA downstream 11277 19839881 ~ 19892697 (+) False LOC110537257
XM_036941057.1 mRNA downstream 11277 19839881 ~ 19892698 (+) True LOC110537257
NM_001124455.1 mRNA downstream 69715 19898319 ~ 19910352 (+) True ecac
XM_036941114.1 mRNA downstream 117486 19946090 ~ 19953207 (+) True LOC110537283
TU138435 other upstream 18059 19768270 ~ 19778335 (+) False LOC110537243
TU138434 other upstream 18059 19775460 ~ 19778335 (+) False LOC110537243
TU138433 other upstream 18059 19775485 ~ 19778335 (+) True LOC110537243
TU138416 other upstream 92606 19702099 ~ 19703788 (+) True G119952
TU138343 other upstream 113335 19676735 ~ 19683059 (+) True LOC110537226
TU138545 other downstream 95468 19924072 ~ 19928477 (+) True G120059
TU138600 other downstream 190095 20018699 ~ 20024983 (+) False casp2
TU138669 other downstream 317129 20145733 ~ 20157110 (+) True zyx
TU138728 other downstream 342478 20171082 ~ 20171381 (+) True G120211
TU138741 other downstream 350804 20179408 ~ 20184625 (+) False LOC110537348

Expression Profile