RNA id: XM_036941059.1


Basic Information

Item Value
RNA id XM_036941059.1
length 4458
RNA type mRNA
GC content 0.53
exon number 19
gene id LOC110537257
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19833389 ~ 19892698 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctccaccctttcTGGGTTAGTGTCATTCTGTAGTGGAGATGTGGAgtgtccttctttctctctctctgtttctccagtCTAATTCAGCTGAAGAAGtgatgCTGCTGGACACAACAGAGTCTACCTCGGAACTTGGCTGGACCACCTATCCTGACACTGGGtggGATGAGGTCAGTGTCCTGGATGACCGGGGGAGACTCATCCGGACCTTTGAGGTCTGCAACGTCAATCAGAACCCCCGTCTCCAGGACAACTGGCTGGCCACGCCCTTCCTCTTCCGCTTCTCGGCACCACGGGTCTTTGTGACGCTGCGTTTCTCCATGCGGGACTGTGCCAGCCTGCGCTCGCCCTCGCCCTCCTGTCGAGAGACACTCACCCTCTACTACAAACAGGCCGACTcacagagagagctggagaggacATGGGCTGCAGAGCCGTCCAGTGGAGAGAAGGACACGAGGGAGGGCTGGGTGAAGATTGACACCATAGCAGCAGATAAGAGTTTCACCAAGGTGGAGCCCAGCCTGCCTCACCAGTACCAACCAGACCGCTACCGTCGGGTCAACATCAAGACCCGCAGCTTCGCGCCGCTCACACGCAATGGATTCGTCCTGGCCATCGTCGACAGCGGCGCATGCGTCTCTCTGATGGGTGTGTCCATCTTCTACCGCCGCTGCCCAGCAACCAACCGCTATCTTGCTTCCTATCTGGCCACACCCTCAGGGGCGGAGCCTACCGCCCTGGTCCCTGTGACTGGGACTTGTGTTCCCCACAGCCAAGCACAGGGAGGCTCCGCCCCCCGCATGCACTGCAACGCAGAAGGTGACTGGATGGTGCCGGTGGGTGGGTGCATCTGTGAAGAGGGATATGAGCCCAATCAAAATGGATCTGCCTGCTTAGaatgTCCAGTGGGGTACTTTAAGTCGGTGTTGGGTTCGGTTCCGTGTTCAGTGTGTCCGTCTAACAGCAGAACCAGTCAGGAGGGAtcacgtgtgtgtgagtgtcgcAGCGGCTTCTACAGAGCACCCGCCGACGTCAACTCCTCCGCCTGCACaaGCTCTCCCTCTGCTCCGACCTCTGTCTCATGGGAGTATGAGAGTAGTGATGGTGGGGTGTCTCTGCGCTGGCGCCCTCCACTGGACATGGGTGGTCGTAGCGAGGTGTGGTATGGGGTGGTGTGTAGGATCTGTCCCTCGGCCACCTTCACCGCCCCGGGGGCGTGCTCCTGGTGTGGAGAGGCGGTCACCTTCACCCCATCCCAGACTGGCATCAAGCAGACCAAGGTCACCCTCAACAACCTGCTCACCAGAGTCACCTACCTTATACAGGTGCAAGCAGTCAATGATGTCTCAGCTCTGAGTCCTTTCCCACCTCAATTCACCAGCATCAATTTCACTACTAGCCAATCAGtgcCCTCTCCGGTCCCTAGCCTGCACCAGTTGAGTCGAGCCCCAGACTCCATCACCCTGTCCTGGCCACAGCCTGACAGACCCAATGGAGACATACTGGAGTACCAGCTCAGATACTACGACAAGggTTCAGATGAGGACAGTGCAGTGAGTGTGTTCAGTGAGACCAACACAGTGACCGTCAACTATCTGGCTCCCGGCTCCATCTACGCCTTCCAGATCAGGGCCCGCAACGAGAGGGGCTATGGCCCCTACAGTCATACTATCTACTTCACTACATTGGCTCTGGAGGGGAGTTCTAAGCAGATCCAGAATCGGCTCCCTCTATTGGTTGGTTCTGTGATGGGCGGGGCAGCCTTCCTCCTGGTCGTTGTGGCGATAGTGGTCGTTTTTGTGTTCCGCAGTAAGAGGAGGGAGAGCCCCTACAGTGACAGACTCCAGAGGTACATCAGCCACAAAGGGGGGGTGAAGTACTACGTAGACCCTTCCACCTATGAGGACCCCAGTGAGGCGGTCAAGGAGTTTGCCCGTGAGATCGACCCCTCTCACCTTAAGATAGAAGAAGTGATTGGTGCAGCCCAGTTTGGGGAGGTGTCTCGGGGGCGCTACCGGCCCCTGGGTCGTAGGGAGGTGCTGGTGGCGGTGAAGACGCTGCGCTGGGgcgtgacagacagagagaaggcaGTGTTTATGACCGAGGCGGGGGTGCTGGGACAGTTTGACCACCCCAACGTGCTGAAGCTGGAGGGGGTGGTCACCCACAACCCACCAGAGAGGATCATCACTGAGTTCATGGAGAATGGACCACTAGATGCCTTCCTCAGGGAGAATGAGGACCAGTTCAGTGTTCTCCAGCTGGTAGGGATGGTGAGGGGTGTTGGGGCTGGGATGAGGTACCTCTCTGAGAGGAACTTTGTCCACCGGGACCTGGCTGCCAGGAACGTGCTGGTCAACTCTAACCTGGTGtgtaaggtgtctgactttgggCTGTCGCGCCTCATGAGGGGTCTGGACCATAACATGCCCACCTACACTGCCTCACTGggcaGTAAGATTCCTGTCAGGTGGACAGCCCCGGAGGCCTTCCAGCATCGCAAGTTCAGCTCAGCTAGTGATGTCTGGAGCTTCGGAGTGCTCATGTGGGAAGTGATGTCATATGGCGAGCGGCCATACTGGGACATGAGCAATCAGGAAGTAATGAAGGCGGTAGCAGACCAGTACCGTCTCCCAGCCCCCCATAACTGTCCTCCAGCTCTCCACTCCTTGATGCTGCAGTGTTGGCAGGCTGAGAGGGGCGACCGGCTAGGCTTcgactccctcctctcctccctggacAGGCTCATACGACACCCTGCCTCCCTCAAGGCAGAGCAACCCCGCTCCACCCAGCCACTGCTAAGCCCCACCCCCACAGATCTGTCGTCGGTGGCGACGGTCAGTGAGTGGCTGACAGCGTTAAGGATGGACAGGTATAAGGACCAGTTTGAGAGGGCACATCTGGACACACTGGACCGAGTCAGCAGGCTAACTATGGAggATGTGCAGAACCTGGGGGTGAACCTGTTGGGACACCAGAGGAAGATCACCAATGCAGCCCAGCAGCTCAGAACTCACCTCACCCAGGGTCAGGTGGAGGTCTAGAACCCACCTATCACCTGAGAGCTTCACAGGAAGTAACAGAGATGTGCACTATTGGAGCTGTAGTCCAAGGCAATGTAAGATCTGGGAGGAGAGTTGCTGAGGAGGAACAGGAAGATTTGAAGTGGAAAAGTcttaaaaaatgtgttttatttcacttGTTTGCTGTtgttacccactctctttttgccagtctctacttctctcttcctcatctctttctctcactcctcccACGTTGTCTCACTactgtccctccctctttcactcgTGTCACCACCCTCAATAAATGAAAACAGTGAAAATGTCATTTTTACCCAAACATAGGGATCTCCCGTCACAAGCAATTGCATAGACAATCAAAACTGATTTTACTGATTAATGTTGACATCATGAACACTGTTCATGATTATTTGTTAAGCTACATCACATCATCTGTACTGAAATCAGAAAATGGCAACCCTTGTTGACTAAACATTAGCCAATGGTTTTTCCCCATCAGTCACTAGCCTGGTCACTTTTATGGGGATTATTCCATTAGACTCAAGACATGGGGTTGTAGTTTACGTCGTGGCAGAATGGAGTCACCCACCATTGAGCAGCACCCCCCTCTGTGTATATTTCACAGTTCACATTCCATTTTTATAGATAAAGTCACTGGGTCATTTGAGTATTGTGAATGTGAAATGGTTTAACTGGACTATGTGTGATCTGATTGCCCATCGAAGTAAGGAAGGCGATGTTATGCTTCGTGAGTATTCTGGGTCTGTTTGTGTTAATGTTCATGTGTGTATGCTGTATGAGGAGTGTGTCTGTGCGCGTGCGTGAAGAAATCCCCATCAACTGAGGAGGGTCACCATTCTGTGTCGCTCCTCCTTGAACTATCCGCCGTCCGGCTAGCAAAATCACACAGTTTCCCTTTAACAATAAATCCATAGCACTTAGAGTACAATAAAACATATCAACATTTGTAACATGACAGTTTAATTCACACAGTAACATTCATTTCGTCCATCTTCACACCTCCAATGGTGGCCACACTCCCAGGGTTCTGGAGGAACGTCCCTCCCTGAAGAAAGCCTCAGATAAGGTGTGTTTGACCCCTTTGACAACCCACAGATTGTCAGCCTTCAAACAGTGTCATAAAtcgggattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcacttgagTAAGTGTGTTTATGTTTATGTCTTCACCACTATTCCACTATTGTGCAAATTTGTAAAATAAAGAATATGATTTTATTTAAATCACTGCATGTGTTAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138497 lncRNA upstream 12003 19819972 ~ 19821386 (+) False G120018
TU138496 lncRNA upstream 12003 19820617 ~ 19821386 (+) True G120018
TU138462 lncRNA upstream 74664 19758458 ~ 19758725 (+) True G119986
TU138354 lncRNA upstream 83165 19660907 ~ 19750224 (+) True G119899
TU138429 lncRNA upstream 119954 19710482 ~ 19713435 (+) True G119955
TU138543 lncRNA downstream 31377 19924072 ~ 19924604 (+) False G120059
TU138544 lncRNA downstream 31377 19924072 ~ 19924604 (+) False G120059
TU138567 lncRNA downstream 64999 19957694 ~ 19957965 (+) True G120079
TU138576 lncRNA downstream 68279 19960974 ~ 19961182 (+) True G120085
TU138572 lncRNA downstream 94708 19987403 ~ 19990796 (+) True G120082
XM_036941070.1 mRNA upstream 4785 19796394 ~ 19828604 (+) False LOC110537251
XM_036941062.1 mRNA upstream 4785 19796395 ~ 19828604 (+) True LOC110537251
XM_021623137.2 mRNA upstream 55058 19775429 ~ 19778331 (+) False LOC110537243
XM_036961714.1 mRNA upstream 133870 19698491 ~ 19699519 (+) True LOC118944064
XM_036941028.1 mRNA upstream 150330 19676656 ~ 19683059 (+) False LOC110537226
NM_001124455.1 mRNA downstream 5624 19898319 ~ 19910352 (+) True ecac
XM_036941114.1 mRNA downstream 53395 19946090 ~ 19953207 (+) True LOC110537283
XM_036941117.1 mRNA downstream 71219 19963914 ~ 19971980 (+) True LOC110537299
XM_036941134.1 mRNA downstream 125907 20018602 ~ 20030933 (+) False casp2
XM_036941141.1 mRNA downstream 125982 20018677 ~ 20030933 (+) False casp2
TU138435 other upstream 55054 19768270 ~ 19778335 (+) False LOC110537243
TU138434 other upstream 55054 19775460 ~ 19778335 (+) False LOC110537243
TU138433 other upstream 55054 19775485 ~ 19778335 (+) True LOC110537243
TU138416 other upstream 129601 19702099 ~ 19703788 (+) True G119952
TU138343 other upstream 150330 19676735 ~ 19683059 (+) True LOC110537226
TU138545 other downstream 31377 19924072 ~ 19928477 (+) True G120059
TU138600 other downstream 126004 20018699 ~ 20024983 (+) False casp2
TU138669 other downstream 253038 20145733 ~ 20157110 (+) True zyx
TU138728 other downstream 278387 20171082 ~ 20171381 (+) True G120211
TU138741 other downstream 286713 20179408 ~ 20184625 (+) False LOC110537348

Expression Profile