RNA id: XM_036941106.1


Basic Information

Item Value
RNA id XM_036941106.1
length 6555
RNA type mRNA
GC content 0.52
exon number 15
gene id LOC110534373
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19929534 ~ 19943377 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACAAGGGAGAGTCACCCAGGAGGTGTACTTCCTGTATTTAGTGAGAGAGGaatggagcaggagagagagagatagtgagtcaGCGAGCTTCATCTCGGGATCAACAGTAACTGATCACGTCAGTGTTGGAGGAAGGAGAACAGATTGATTTGTGGGATGAAGTCCGCGGGCTTTCATTTAGTTTGTCCAGATTCTTCTGTTCATTAACAGCGGCTGTGAagacaagacagagagaaaaataggAAGGGGAAGATAAGTGTCAATCTGTTCAGACTTGTTTGGGAATTtgagcagggaaggagggaggaggaggggtgaaacagcaagacagagagaagaacagaggggagaggttgacagacagaccgagaagaAAACAGatgctgagagagacagagggtcagGATTGGATTAAAGTTGAAATAGAACTCCCCCCCCAGCAGATCTGGAGAGGAAGGATTGCTTGTGTTGCGCAATCCTTGTTAGTTCACACTACTAAACTAACTGAGAGctgcagagagaagggagactgGACATCTCTAGCGTACTAAACTCAGGTTCTGAAAAAAGTATGTTACCATGGGGACCAAACGCCCCAGTCTGACTCCCTTTGACACATCTGATCCATCCAATCAAAGCGCTTCCTACTTGAACCCTCAGCCAATCAGCCAGATCTGCCGTGAAACAAGTCCCAGACCTGGAACAGTGGcccggacagacagagagagggagaggatccaagaggaggaatggaggagagaaagagaaatggagagatttAAGGACAAGACAAGAAATAGAAGAAAAGAGATGGAACCCGGAccaagagagaggaacagagagaaggaCTGTTCCCCCATatccagagggagggaggaggaaagggaatggagagagagagaaagggggggagcgGGAGAGAAACGTGCCAATGGAAGACCTACTTCAAATCTGGAGATCAGGaaccacagagacagagaaaaggagagaaagaagggagacaCGTTTCCTACAATTGTAAAACAtagcaaagagagagacagaagaatacGTGCATTTGTGGAGGAAGATGTGGGGAAAGAAGGAATGAGACAATTGGAGAGACCGAAGGGAACAGAGATGGACGactgggagagagaacgagaaacaGCAGCAAAGATACAGCGGTATCGAGATGCAGAGAGGGACTTCcaaaggcagagggagagggagaaggagagaatcAGGGCACAGGAGGacggagagagaaatggaggaaaGCCCATGGAGGATAAGACTgtgagacggagggagagagcgagggaagcgGAGCCAGATttcagagagaggagaagagagagggactcAAAGGCTAATGACCTACGGAGCAAAAGAGAGAGgtatatggatggagagagagagaggtcaaaactctggcagggagaaagagaagttagaggaagagagggagattcaCAGAACTATTCCGATAGAGAGggcagggatggaaggagggaaggaaatacagagggacagagggacaccAGGAGTGAGGGAGACagtgatggagagaagaggaaagagagagtgagagatgacaACAGAAGAGAACTGAAACATCTGCACAGTAAAAGTGAGGGGGACACTGAGGGGAACGCAGCatgggatagagtgagggagaaagagagacagaaatggagagggggggagatgtacagagagagggatggaagtaaAGATGCttatagacagagagtgagggacGGGGGCAGGGAcattgatggagagagggacatggacagatacagagagagggaccggAGAAAAGTgagggaagtggagagagagagggatggggtgagAGAAGGGGGCAGGCGAGAGAACGGACCAAGGGAAAGGAGGGATCCGGAGAAAGATAGGGAGAAAACACAGCCCAGtgtaacaggagagagagggaagcggatggatggagagagattcagagagagggagagatattcCAAGGggaaggatgaagagaggaggtgcagggagaagagggacagagagacagatccCAAAAGGGAGGGAGAAGCAGATGGAGCTAGCCGATCGCCGAGTGAGACAGCCCCAAGGGTGCCACCACGAGTCCAGAGCAGTGGAGAATGGAGCAGTGacatagagagggaaagaaaatggAGAAGAGAAAGTCATGAAGAAAAGGAGTCAGAGGGAGATGTggacagggggcagagagagtgtagtgaaagagagagaccagatagagtgagggggagagaagaaggaaaggaagagacgatACCAAAGCGCCCTGAGCAGAGGAAGATGTGGTTAGAACCACAGAAGGTCAGATATAACAAAGACTCCTCTTTAGAGGATGAGGTtatagagcgagaaagagagaggcacactaacagatggagagagagaagtgaagaaGAGGACAGATCCGTGGAACAAAGAAAGTCtatagatgaagagagagaagctgagagggagggagggagggagaggtatttGGAGAGAGGGTTAAATGTAGATGAAGACGATGAGACAGAAGCCTGGAGGAGTTATAGCAGAGGAAAGGAACACCAGACTtacagtgatggagagagagaggaacgctGGCAGAGggacagtgagatggagagagagaatgtgacagATAAcacagagggtgacagagaggaagaaggaagaagtgatagatatgcagagtgggaaggagggagggatagaatcccttcctctgaggacGGCTTTATCACTGTGTCCAGTGGTGGAGAAGAGGAATTTGAGGACTGCAAGGAATTCGTGGAAGTTGGGTTCACTAATCATGTTACCAGGCAACCTGTTAGCTTTcaggggagcgagggagagatggagagaggtggagggagaagacatgaaagagagagagaaagaacagaagaGCGGACAGAGCAAAAAGATGATGCATTGGAGGGAGAGGTGAATGATGGAAAGGGGAAGAAGCAACCCACCTATGTATTCTGTGTGATTGGACAAACACTGCCCAGGTCAAAACCCAATCAGACAGCAGTCCTGGGTAACATGGAATCAGAGCGGACCAATCAAAATCCTGGATATGGTCATAGGGACAGTGGTGACATCACACACCTCCCTCATGAGAACCCTTCCAGAGATGGAGACCAAGGGGCAGAGGATGAGAGAAAAATAGTGAGGGATGAGATCCACGTGCCAaaggaggagagaacagacacagaaGAGAGCTCCATAGTGGACGTCAGTCACACTACCCTAGAACGAGAGACCGGAGAACGACTGAAGGTCATGGAGGAGAACCCATACGCTGAGATAGAGCGAAGGAGGAACTCTGAGACCGAAAAACTCCTCAAAGAGTGGAGAGAAAGACATGAAGAGTACACAGAAACAAGAGAGAGGGACCCAAcagacaggaggaggacagaacCAGAGATAGGTCCATCTTCACATCCCAGTGGAGAGTACCACCACCATGGGATCCCTGTAGTTGACCAAGCCACCTCTGACCAGAATAACCCTGTAGTGATGAGCCCAGAGGAAGCTGTGGCCATCCAAATCTGTATAAGGGGAGCCTGGAGCACAGAAGAGGAGGCCAAGCGCCACTCCCAGGCCTCACACATGAAGTGGGCCAAGAACGTATTGAGCGAGATCCTTGGCAGCTCAGAGGAACCAGCCCTCGGCAACCCCCAGCCAGAGTCACAGGGAGGTCAAGAGGTCAGCCAGACTACGAGAGGGACCGAGAGGGTAGAAGAGGAGCTAGAGGAAGAAAAGGATGAGACGCTAGAGGGGGGAGGAGCCTCAACCGTCTACGCCACGGTTCAGAAGAGGACGAAGCGTGGGAGGAAGTCGGTAGAGGAGAGGCTGGCTGAACGGGAGGCAGAGCCAGGGAAGGTGGAGGATGAGAGAGATGATGAGGAGGTGAGCGTCAACTGGGGAGACGTGGACATGAGgaATGTCACGGATACCATCAGAATGGATAGGAGGAACTCCAAATTTTACAATTCCCAGCTCTACCAGCAGTACAGTGAGACGGCTCAGAACAGGGAGATCCTCAGTCAGTCTTGCTCTGACGCCCTCTCCATCTACGGGGAgctccctgtccccctgtcccccgTACCCCCCTCTCTGGCCCCCTCGCTCCCTCCGGCACGCAGGCCCTTACCCTGTCTCCCCCCAGTCATCCACCCCCACTCTCTGTCCCACTCTGGATCTACCTCCAGTGGCACCAGTGCCAAGTTCCTACCCATACCACAGCCGCCCCAGGCCCCCTCAGCCAGGCCTTCCTCTCCCcgcctctccatctccctcacccAGTCCCCCAGCCTGTGGCAGGAGATCCCTGAGGTCAGGAACAGTGCTGAGTTTGGGGAGCTGACTAACGACCAGAGACGCCTGCAggagGTGCAGTTTGAGGTTGTAACTTCAGAAGCGTCATACTGTCGTAGTCTGGATATTGTGGTGGATCACTTTGTCAAGTCTAAGCAGCTCGGGGAGCTGTTGACTACTCAGGACAGGAGCTGGCTGTTCTCCAGGCTGGCTGATGTCCGAGCCATCAGCCACAGTTTTCTGTCGAAGCTGGAAGAGAGGGTAGAATCTGATATGATGCACTTCACCGTGTGTGACATCATCGCTCGCCACTGTCAACGCTTCAAGAAGGTCTACGTGCCCTACCTCACCAACCAATCATATCAGGATGCCACTTACCAGAGACTCATGGATGAGAACCAAGGGTTCAGGCGGGTAGTGGAGAAGTTGGAACGCAGTTCAGTGTGTCAGCGTCTTCCTCTTCGCTCCTTCCTCATCCTCCCCTTCCAGAGGATCACACGAATCAAACTCCTTGtgcagAACATTGTGAAGAGAACAGCCCAAGGCACAGAGGAGGAGGTCCAGGCCATCAAAGCTATGAAGCTACTGGAGAGGTTGATCCAGGAGAGCAATGACAGTATTACTCAGATGAAGAGCATTGAGTCGCTGGTCTCTCTCAGTGCCAGAGTGGACTTTGAATGCAGGactcTCCCACTGGTCAGTCAGTCTCGTAGGCTGGTGAGAGAGGGACCGGTGACTGAGATGATGGATTTCTCtctgaaggagacagagaggagtgtcTACCTTCACCTCTTCAATGACTATCTGCTGCTGTCGCTGCACAAAGAAGGGGGCAGGTTCACGGTGATAGACCATGCTCCAGTGTCAGAACTGAGAGCTGAGAACTGTCGGGTCAAACTGCACTCTCTAGAGAAGAACCTTTTCCGCCTCCACCTTAACAAGAAAGCCCTGCTACTTAGCACCGACACACAGGGTGATAAACTGCGTTGGATCTCAGCTGTCTCCAGGCCCCATCCTGTTATTGACTACTCTACAGCACAAGACTTCACACAGATGCAGTGCGTCCGAGCCTTCGTTGCCCACCAACCAGATGAGCTGTCCCTGGAGAAGGCTGAGGTCATTCTCGTCCACCAGCAGAGCAGCGACGGTTGGGTGGAGGGGACCAGgctgtcagacagacacagaggatgGACTCCTGAGTCCCACTTGGAAACCATAGCCAGCCTCAGGGTCCGACACCGCAACCTGCTGGACGCTCTAAAAATTACCACAGCCACGGCTGCAGTATGACATGCCAACCACTGCATGACTGCACTAGTGGAATCCTAGTCACTGTGTTACTGGGGACATGTGGATTTGGACAGTGGATGAAACATTGTGTTTCAGACTGGAGTTGTCCCTCCCGGCCTCACCCTGCTTATTGGGGATGAATGGCAAGGGGATGAATGGCTTTAGAGGGGGTGCCTTAGATGGGGGTGCCTTAGAGAGAGGCACTGGACTGACATTAATACCTTTTAACACTTACAGGAGTGTCAACGTAAATTATTGAAAGGCTTTTGGAGGTGCCTGGGAGTGTGCCTGGGAGTAGCCTTGTAAATTGAACCCTGGCAATGAATGTCGATGGACTGTTACAGGATGTATTGGAAATCAGCCATCTAAGAACATTGTGGATTGAGGTCCTGTGGCCCCGGAGAAGGACAGCAGTTTCTCCATAACTGGTTTACTTGGGGACTTTAAAGACATGgcatggggcctcccgagtggcgcagcggtctaagacactgcattgcagtgctagaggcctCATGATacacctgggttcgatcccaggctgtgttgcagccggccgcgaccgggaaacccatgaggcggcacacaattggcccagcgtcctccgggttacgggagggtttggctggccgggatgtccttgtcctatcGCGCTCTAGTGCCTCCTTGTGGCAGGTCGGGGGGTTTCAGAAGACGCATGgttctcgaccttcacctctcccgagtccgtacaggagttgcagctaTAGGagaagactgtaactaccaatgggatatcatgaaaaaggggtaaaaaaatacaacaacaaaaataagacatGGTATGATGCACCATGGCAGTGTTTTGCAATAGAGGTTATTGTCTTTGAACAAAATGTTTATATATATTCAGGGCAATGTATTATTTGTGTATATTAAAAAGATTTTATAAATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139609 lncRNA downstream 36883 19891200 ~ 19892651 (-) True G120925
TU139597 lncRNA downstream 47619 19880288 ~ 19881915 (-) True G120916
TU139543 lncRNA downstream 100011 19826932 ~ 19829523 (-) True G120863
TU139553 lncRNA downstream 142059 19787267 ~ 19787475 (-) True G120872
TU139552 lncRNA downstream 142674 19786639 ~ 19786860 (-) True G120871
TU139640 lncRNA upstream 10174 19953549 ~ 19953780 (-) True G120953
TU139687 lncRNA upstream 109279 20052654 ~ 20053172 (-) True G120997
TU139709 lncRNA upstream 126228 20069603 ~ 20076245 (-) True G121005
TU139747 lncRNA upstream 178098 20121473 ~ 20126339 (-) False G121030
TU139748 lncRNA upstream 178098 20121473 ~ 20126339 (-) False G121030
XM_021623198.2 mRNA downstream 1001 19924063 ~ 19928533 (-) False LOC110537275
XM_021623177.2 mRNA downstream 5612 19914455 ~ 19923922 (-) False LOC110537264
XM_021623186.2 mRNA downstream 5612 19914455 ~ 19923922 (-) True LOC110537264
XM_021623119.2 mRNA downstream 156444 19762781 ~ 19773090 (-) True LOC110537231
NM_001124382.1 mRNA downstream 207009 19715574 ~ 19722525 (-) True il11
XM_036941118.1 mRNA upstream 32605 19975980 ~ 19987280 (-) True LOC110534384
XM_021617774.2 mRNA upstream 44027 19987402 ~ 19994541 (-) False gstk1
XM_036933463.1 mRNA upstream 44027 19987402 ~ 19997220 (-) False gstk1
XM_036933452.1 mRNA upstream 44027 19987402 ~ 19997221 (-) False gstk1
NM_001165133.1 mRNA upstream 44028 19987403 ~ 19994501 (-) True gstk1
TU139615 other downstream 1074 19924098 ~ 19928460 (-) True LOC110537275
TU139490 other downstream 233970 19693689 ~ 19695564 (-) True LOC118944062
TU139386 other downstream 441302 19484337 ~ 19488232 (-) False cacng6b
TU139389 other downstream 441302 19485649 ~ 19488232 (-) False cacng6b
TU138073 other downstream 880504 19048307 ~ 19049030 (-) True G119663
TU139782 other upstream 267693 20211068 ~ 20212367 (-) True G121046
TU139863 other upstream 519307 20462682 ~ 20465789 (-) True LOC110509624
TU139931 other upstream 555521 20498896 ~ 20500587 (-) True G121188
TU139978 other upstream 683182 20626557 ~ 20627700 (-) True G121208
TU140219 other upstream 1113223 21056598 ~ 21058849 (-) True G121421

Expression Profile