RNA id: XM_036941114.1


Basic Information

Item Value
RNA id XM_036941114.1
length 3546
RNA type mRNA
GC content 0.42
exon number 7
gene id LOC110537283
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19946090 ~ 19953207 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCCACTACGACTCatttgataccatttgaaacgacaagctgtggtctatcttggtttagttacaTCTTTGCTACAGTCACATGCGTTTCCTTGTTTAGTTCCACTTCCGCATCTCACATAAAGTAACGTTAGACGCTGTATAATGATTTTATAGCATAAATCGTTTACTTTAAAGTACATTTTATAGCGGACTGTTAACGAACATGATTTCGTAATTGTGCGTGATCGAAATTGATTACCAGGTGTTAGTCTGTTGCATTTGCAAGAAAAAACAGGGGACAGTGTCCAGTTTAGCTAGCTTAGCTTTCTTTTGCTAGCTACTTGATCAGCTAGGTTGTAGCCATTTCAACCTAACCCAACCAACACTTCGGAATAACTGGCTACATCTTTTCGGAATGAAGGTGTCCatgtcccccccacacacagcgaCGCCTGTGCGGCTGTTAGTTCTGGCTGTTCAGCTGGTCCTGTTGGTGTGTGGAAGCCAGGCCCGTGACGACACCAAGAGGTGTAAGCTGTTCTCTGAGTCCCCGGCAGAACGGAAGGTCCTCAGTCTTCTAGAACCGCTCACTAACAAGACTTTCTCTGTGAAGACGACAAGCGACAAGGAGAGCTACACGTACCAGTTCCAAGTGTGTGGGGATGTGGGGAAAACGGTCGGAGCGGGACTCGTTCAGATCGACCATACCGAGAAAAAACTTGAGACCGTGCTTGGCCTGTACACTGTAACACAGGCCATCGGAGGAAGTGACTGGGTGATGTTGATCTACAGCAACGGCACCAAGTATGACGGCCACTGTTCCAAGGAGATGAGGAAAGCCATTGTCATGATCTCCTGCAACAGAGGAGTGGaaatgGGGAatctggaagtggtgttggaggagagggagagggacagggactgTTTCTATCTGTTTGAACTGGACTCCAGTGCGGTCTGTCCCGCTCTGCCATCCCAGCTCAGTGCAGGCTCCATAATACTCATCATTGGGTTCGTCCTCTTGTCAGTGTACCTCATTTGTGGATTCCTCTACCAGCGGTTGATTGTCGGGGCCAAAGGGTTGCAGCAGTTCCCCAACTATGTCTTCTGGACGCAGGTTGGCAACCTGGCAGCGgATGGATGTAACATCGTGTGTAGAACACAGGGCCCCGAAGAGGAACCTCCCACATACAGGGGTGTGTCCACAGAGCCAGAGGAGGAGccagaagagagggatgaccacTTGCTTCCCATGTGATCTGATGTCAGTAGTGGGAGGGATCTATCCCGTGTGAAGCTTTTGACACTTCGGATAGATATTgcccttaggcacagatctaggatcatcaCTTACTCTCTCCAAGTCCGGAGAAACATAAAACTGACCTCAGTTCAGTGTCTAGGTGCAACGTCATCCTAGTTCATTTTGACAGTTTCAGGGATGAGTTTAGAGGTGGGCACACCAGTTTATGGAAGACTGGAGGATTTGTGACATCCAGGATTCCTAAACACTTAGTTCATTATATTATATGGTAAGTCACCTGCCCTGGTTTGCATGGCCCAGGCGTCATTATTTGGAGGTGGCAACAAAAACCTGGATacacttcttttttttcttttttctttcatGAACTGGAGTGGCCACCTCTGGATGGAGAGTGACGTCTCAAACAGACTCTGTTACATCTGGTTCATCTGGCACAATACAAGGTGTCGTTACTAGTTAACGCAGCCACAAAGTCATGAAACCCCACCTATTTCTACAATGTATCTTTTAAACCTAACTAACCTTAACCAAACGGATAACCTGATGCCTAACCCTGACCTTTTAAATTGAGACCAAAAGCACAATTTTGTTTTCATTGAATTTTCACAATagagccaattttgactttgtgactGTATTATCTAGTGGAAACCGTAAGGCCTTTCTACATGACTGACATGTTACTGCTGACAATGCAACCATAGGAACAGTTTCTGACACTCCCATCCAGTTTGTTTCAGTAGCTGATGGCTGTGTACTGACTTgtaggtcacactttatttgaagGTCTGCTTATACACTGCTTAGAATAAATTTTACATAGTAATATCACAGTAAGTGAAAAAGCAGGCTTTTGTTCACGATTACACACTTACAGGTCATTGTAATAAATTGTTTACATTTAAAACGGTTAGATATGTTTACTGTTAAGAAATAAATAAACACTATCACTTAGCCTAAAATGTATGATTGGGTAAAAATATTGAATAATGACCTTCAAATTCAGTTggactacactacagtacagagcCATTTCAACCAATGCACTGCTAGACATACACATTTAGTCCGTGTTGCTATTTTAGAGCATGATGTTGACTGGGCCTTGACCAAAATGTACTTCTGACCCGTTCTACCTTTTCCTTAGCTATTTGAAGAGTAGGGTTGGAACCAATTCCATTTGAATTCTGTTCCTATCAGTTCACTTCCTATGTTGACAAAATTGAAATGGCATTGACCCCAAACTATGGTACTGAGTAGTAGCtgtgttcataaccaagtgggaaggtggtaattaccagttgtgaagtcgtaaataccagttggatACGTTTTACGTTCTTTGAATTTGTTGGGAAACGCTGATTCGctgattggctaatggccaacagGTGGCGTCAACTGTAAATTAAAAGTACAGCTTTCACGCTTGTAAACAAATTAGTGTTCAAAAACcatattaatatattgttttttataAATAATGCTTTGTTGCGTTTAACAGCCAAAAATGCTATTATCGAGGTAATTTTCTTATAGGTGACGTCAGAGGTCACCATGAGGGAGAAGTCGGAGCTCAGGGATGATAGacaagtttcccactagtaattaccagttggaatGGTGTTAAAGTGGGTTTTTCCCAGTCATATGTGGTAAATGCCACCACCTCACTTGGTTATGAACGCAGTATTAATGATACTGAGGATATTGATTATGTTTAGGATTTTGTAATATAATGCTGTGATTGAACAGGTCCTTCATAAGGCAACAGAAGGCACTTTGTGTTCAACAGTAAAATGGAGGAACTTAAGTAATTTATATAATCATGAAAAATACACATGTACTATCTGTGACATGTGGGtgaatgttttttaaaatttaatttttgtttctttgtggtgtttttaaaaacaaaaaaacttagCCCATGGCAATCGCTTAGTTCAATCAAGACCTGAAAGATGGCATTCGTTAGACCCGGCCCAGGACAACAGGCCCCAATAAGATGTGGCGAAATGGATCAGAACCAAACCAGGTCTGGGTTCAATGGATTTGGTCAGTTCTGACTTTGGCTTTAGTTTGTGATGCTCTTTGTACTTGCAGAAGAGGGGAAGAGTAAAATAGAATTTGCTTAGTTTGTTTTGTGCTTTTGCATCAAATTAAATATGAATTGTGTTTTATTACAGTTCTGAATCTGTCATGTATGACAAGTTTTAGAGTGCTGCTGTGTTTGCAGGGGCAATTAACTCCCAAAGCAACGCAATATAAAacataataaatatatttttaaaacga

Function

GO:

id name namespace
GO:0015761 mannose transmembrane transport biological_process
GO:0000323 lytic vacuole cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005537 mannose binding molecular_function
GO:0015578 mannose transmembrane transporter activity molecular_function

KEGG:

id description
K10089 M6PR; cation-dependent mannose-6-phosphate receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138543 lncRNA upstream 21486 19924072 ~ 19924604 (+) False G120059
TU138544 lncRNA upstream 21486 19924072 ~ 19924604 (+) False G120059
TU138531 lncRNA upstream 64374 19879966 ~ 19881716 (+) True G120048
TU138515 lncRNA upstream 95188 19849736 ~ 19850902 (+) True G120032
TU138511 lncRNA upstream 95653 19849499 ~ 19850437 (+) True G120031
TU138567 lncRNA downstream 4487 19957694 ~ 19957965 (+) True G120079
TU138576 lncRNA downstream 7767 19960974 ~ 19961182 (+) True G120085
TU138572 lncRNA downstream 34196 19987403 ~ 19990796 (+) True G120082
TU138602 lncRNA downstream 74616 20027823 ~ 20030912 (+) True casp2
TU138627 lncRNA downstream 99462 20052669 ~ 20053169 (+) True G120126
NM_001124455.1 mRNA upstream 35738 19898319 ~ 19910352 (+) True ecac
XM_036941057.1 mRNA upstream 53392 19839881 ~ 19892698 (+) True LOC110537257
XM_036941053.1 mRNA upstream 53393 19839881 ~ 19892697 (+) False LOC110537257
XM_036941059.1 mRNA upstream 53395 19833389 ~ 19892695 (+) False LOC110537257
XM_036941070.1 mRNA upstream 117486 19796394 ~ 19828604 (+) False LOC110537251
XM_036941117.1 mRNA downstream 10707 19963914 ~ 19971980 (+) True LOC110537299
XM_036941134.1 mRNA downstream 65395 20018602 ~ 20030933 (+) False casp2
XM_036941141.1 mRNA downstream 65470 20018677 ~ 20030933 (+) False casp2
XM_036941136.1 mRNA downstream 65557 20018764 ~ 20030933 (+) False casp2
XM_036941153.1 mRNA downstream 78684 20031891 ~ 20093715 (+) False LOC110534391
TU138545 other upstream 17613 19924072 ~ 19928477 (+) True G120059
TU138435 other upstream 167755 19768270 ~ 19778335 (+) False LOC110537243
TU138434 other upstream 167755 19775460 ~ 19778335 (+) False LOC110537243
TU138433 other upstream 167755 19775485 ~ 19778335 (+) True LOC110537243
TU138416 other upstream 242302 19702099 ~ 19703788 (+) True G119952
TU138600 other downstream 65492 20018699 ~ 20024983 (+) False casp2
TU138669 other downstream 192526 20145733 ~ 20157110 (+) True zyx
TU138728 other downstream 217875 20171082 ~ 20171381 (+) True G120211
TU138741 other downstream 226201 20179408 ~ 20184625 (+) False LOC110537348
TU138791 other downstream 366532 20319739 ~ 20320256 (+) True G120259

Expression Profile