RNA id: XM_036941117.1


Basic Information

Item Value
RNA id XM_036941117.1
length 3393
RNA type mRNA
GC content 0.52
exon number 15
gene id LOC110537299
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19963914 ~ 19971980 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aagaaagagagggggcggGATTTTTCTCATCTGCCTCACCGTTGTTTGCTTCAAACAAAAAtctgaaaaacatcaccaaaggTTTCTTCCAAAAGCAAATTGCGTAAAACGTTTACGGATAAAAGCTGGATTGTATAtttaaaaagtacaaataaaggTCCAGGAGATTGAGAGAGCATGGATGCAGGTGATGACCAGAACACGGGCTCTACCAATGGGAATGCTCCGTCTGCTGGGAACACCCGCCCTCCCCAGATAGCCCACATGTCTCTGTATGAGAGGCAAGCTGTGCAGGCCCTTCAGGCGCTGCAGAGACAGCCGAACGCAGCCCAGTACTTCCAGCAGCTCATGCTGCAGCAGCAAATCAACAGTGCCCAGCAGCTTCACAACCTGGCTGCTGTGCAACAGGCCACCCTCGCTGCTAGTCGCCAGTCCAACTCTCccaaccacagtgtctcccaagcAACCACCACTGTCAATCTGAGCACCACCTCTGGGGGAGGGACCATGACCAATCCCCGCCCCCTCGGCCCTGCCACGTCAGTGACATCATCAGCTCTCAGCCAATCAGTGCTGCTGGGTGGGAACTCAGCCGGACAGGGCCAGATGTACCTGAGAGTCAACCGCTCCCTCAGGGCACCCCTCGCAGCCTCCCAGCTCATCTTCATGCCTGGTGGCACAGCAACGGCTGCTGTAGCGACAGTTGCACAGCAACAGCCtcagcaacaacagcagcaacaggAAGTCCATCCCACCTCCAATGCCCAATCCGACAATGACCAGGTGCAGAACCTGGCTCTCCATTGTATCTCCACTCCCAGAGTGGCCGCAGTGAAAACTGAGTTTCCAGACAGGAGAGACGCAGccAACTATTCTTttagtcaacaacaacaacagcattctcagcagcaacagcagcagttcTCTCAGAACACCCAGCAGCAACAGCAACATATGGCCAACAAACTGACTAGCTACACTCATCCCACTGCTCTCCCCAGTATAAATGTCAAGACTGGAAACCAGCTGAATATGGCCCCAACCGCTGCCACCTCAGTTCCTGCCTCCcccacgctccctctctcccagctccTCATCTCCCCCTCAGGCCTTTGTCAGGCCCGGGCGGTAACCACAGTTACCCCTGCTGCCACGGTAACGCACATCCTAGTCCCCACCTCCAACGTTCCTACTTCCTCCCAGGGCTACCCCATAGGTTCAGTCGCTCCCAAAACTAACATCAACACCCAGACCTTGGTGGTGCAGCCACTGCAGCAGTCCAACACTAACATGGACAAGGTGAGCCACAGCTCTGGCCCTGTGCACATACAGCCCAAAACCTCACAGGGTCACCGCTTACCTGTCCAGCTGCCCCCACGCCACCCTCCACCTATCCTCCCGGCTCCGCCCAATACGGGGTGCCATCACCCGCCCCATGTCCCAGTCCAGCTGGTGGGAGCTAGGCAGGGCTCAGTAGGAAACTCCCAGGCTTTGGCACAGGCCCGAAGCTGCTGCCCCCAGGACAACGGCACTGCTATAGCCTCTACTGGAGGGAACACCACGGCAAAGCCTGCAATTGGCTCATTGAAGAGGAAGTCGGAAACTGATGCAACCAATGAGATGGCAGTCGAACTTTCCCAACTTTGCTGTCCACCAATGAGAGATTCTGCCCCTCCTCTATCTCCTGCCCCCACGTTGGACTCAGcTCCTAAAGTGGTGCcagccttctcctctccccccaccctgtctctgcctctgcccctgtctcGGGGCGTGGGGGGTCAGATAGACAGAGCCCCTCTGCCCCAGGCGGTGGTCAAACCTCAGGTCCTCACCCACCTCATAGAGGGTTTTGTCATCCAGGAGGGAGCTGAGCCTTTCCCTGTGACTGGGCCAGTGAAGGAGCCTCTAGCCATGGGTGTTCAACAGGCTGACAATGGAGGCCCTGCAGTGTTGAAGTGCGAGTACTGTGAGAGCTTGGCTCCAGCCAGCCAGTTCAGGGGCTCCAAGAGATTCTGCTCCAAGACCTGCGCTAAGAGATACAATGTGAGCTGCAGTCATCACTTCCAGGTCAGTAGGGGGCGAGCTTCTGCACGGCCGCCCGGTCCTCCCGTTCCCCCAGAAAACATTGTCAGACGCAGGGGTCCTCGCAGGAGTAGCTCGGAGATCGCCTGCGCTAAAATAGCCGGCAGACATTTGCCTGTCAAGGAGTGTCGTTCTGAGTCCAGTCGCTCAGAGGATGTGTCCAGCTGTgacggagaggaggaggaggaagattcCCCATCACTCTCCCCtagctcctccctctcctgccctAGGCCCGCCCACTGTGATCCCCATTTGGATGACTCAGCTCAAGGCAGCCTTCCATTGGACGAGGCCAACTTCCTGTCTGGGAGCCCCGCCCATTGGGGTGTGGAGGAGGTCTGCAGGTTCATCTCTTCACTACAAGgTTGTGAGGACCTGGCTGCCCAGTTCCTGTCACAGGAGATTGACGGACAGGCCCTGCTGCTACTCAGAGAAGAACACCTAATCTCCACCATGAACATCAAACTAGGACCCGCCCTCAAGATCTGTGCCTTCATCAACAGCCTACGAGACTgacgggggagggaggaggaaaaggggTTTCAATGAACTTGAAACTGGGACCAACACTAAAGACTTGTATTAGTGACATTCAAGCCTGAGACCAAGACTGAAAGGGAGGGGAAAATGGGGTTTGATTTTTATCATAAACATCAATCATTTTAGAGACTAGATGAAGAGAAGGGGGTTAAATATAGGTAAGAGGGGAAATAATTAGAATATGCTTTGACTTTACTGGACATTGATTGTGCAAAAAATCTGTTATGAGTGAGAGATGAGCATCAGATAGTCTGTCTTTAGAGTTCATGTTTGTGAGGTAAACTGACAAAGTATGGGtgagttcgtgtgtgtgtgtgtctgtcaggagAAACATATACTCATTTGACACTGCAAACGTGGTCACCTACAGTAAccgtggctagctagctaggacaGTTCAAGTTGCCTTTTTCTACATTTCAACGGTGCTATAACCATAGTGTTATTATTGAAAATGGTCCATTTCACTTTTCTTTCTACAAAGTGGATTTGTAATGTTAATGTAGATGCCAGGCTCTAATCAAGTGTATGAAAGGACATTGAAGAGCTTTAACAAATCGTTTTTTTATGTCACCAGATATGACTCTTTTATAGCTTTGATCTTTTGTACTACAATCAAAGTTATTATTTTGGTGTGGAAGTTTTTCATGGAGGGGGATGTAGTGAGTATTAGTAACTGACTGAACTACCTGAATATGGGTATTTGTCCTGAGAGGGGAGATACTCTGTGTATGCAGTACTACCAATAAACACCTGTTACTGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138576 lncRNA upstream 2732 19960974 ~ 19961182 (+) True G120085
TU138567 lncRNA upstream 5949 19957694 ~ 19957965 (+) True G120079
TU138543 lncRNA upstream 39310 19924072 ~ 19924604 (+) False G120059
TU138544 lncRNA upstream 39310 19924072 ~ 19924604 (+) False G120059
TU138531 lncRNA upstream 82198 19879966 ~ 19881716 (+) True G120048
TU138572 lncRNA downstream 15423 19987403 ~ 19990796 (+) True G120082
TU138602 lncRNA downstream 55843 20027823 ~ 20030912 (+) True casp2
TU138627 lncRNA downstream 80689 20052669 ~ 20053169 (+) True G120126
TU138698 lncRNA downstream 148932 20120912 ~ 20126334 (+) False G120191
TU138701 lncRNA downstream 148932 20120912 ~ 20124919 (+) False G120191
XM_036941114.1 mRNA upstream 10707 19946090 ~ 19953207 (+) True LOC110537283
NM_001124455.1 mRNA upstream 53562 19898319 ~ 19910352 (+) True ecac
XM_036941057.1 mRNA upstream 71216 19839881 ~ 19892698 (+) True LOC110537257
XM_036941053.1 mRNA upstream 71217 19839881 ~ 19892697 (+) False LOC110537257
XM_036941059.1 mRNA upstream 71219 19833389 ~ 19892695 (+) False LOC110537257
XM_036941134.1 mRNA downstream 46622 20018602 ~ 20030933 (+) False casp2
XM_036941141.1 mRNA downstream 46697 20018677 ~ 20030933 (+) False casp2
XM_036941136.1 mRNA downstream 46784 20018764 ~ 20030933 (+) False casp2
XM_036941153.1 mRNA downstream 59911 20031891 ~ 20093715 (+) False LOC110534391
XM_036941148.1 mRNA downstream 78095 20050075 ~ 20093717 (+) True LOC110534391
TU138545 other upstream 35437 19924072 ~ 19928477 (+) True G120059
TU138435 other upstream 185579 19768270 ~ 19778335 (+) False LOC110537243
TU138434 other upstream 185579 19775460 ~ 19778335 (+) False LOC110537243
TU138433 other upstream 185579 19775485 ~ 19778335 (+) True LOC110537243
TU138416 other upstream 260126 19702099 ~ 19703788 (+) True G119952
TU138600 other downstream 46719 20018699 ~ 20024983 (+) False casp2
TU138669 other downstream 173753 20145733 ~ 20157110 (+) True zyx
TU138728 other downstream 199102 20171082 ~ 20171381 (+) True G120211
TU138741 other downstream 207428 20179408 ~ 20184625 (+) False LOC110537348
TU138791 other downstream 347759 20319739 ~ 20320256 (+) True G120259

Expression Profile