RNA id: TU138602


Basic Information

Item Value
RNA id TU138602
length 2549
lncRNA type sense_over
GC content 0.41
exon number 5
gene id casp2
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20018602 ~ 20030933 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTAGGTAATATAGTGTCTGTTGGGCCCTACTAGGTAATATAGTGTCTGTTGGCCCCTACTGGGTAATGTAGTGTCTGTTGGCCCCTACTGGGTAATGTAGTGTCTGTTGGCCCCTACTAGGTAGTGTCTGTTGGGCCCCTACTAGGTAATGTAGTGTCTGTTGGCCCCTACTAGGTAATGTAGTGTCTGTTGGGCCCCACTAGGTAATGTAGTGTCTGTTGGGCCCCACTAGGTAATGTGTTGGGCCCCACTAGGTAATGTGTTGGGCCCCACTAGGTAATGTGTTGGGCCCCACTACGTAATGTAGTGTCTGTTGGGCCCTACTAGGCACTGCAGCCATGAGGAACACCAAGAGAGGATCCTGGTTCATCCAAGAGGTCAACTCAGCACTCCGCTTCAGAGCCAGAGACACACACCTATCAGACATACTGGTGCagGTGAATGGTCGTATTAAAGACAGAGAAGGCTATGCTCCTGGCACCCCCCACCATCGCTGTAAGGAGATGTCTGAATTCACCAGCTCCCTCTGCAAAGACCTCTACCTGTTCCCCAAGTACCACCCTCAGTACTGACACGCACACATTTCTGCACCTCTACAACACCACACACATACCGCACccactactgacacacacacacatactgttacACACAATCATAGAGGATTAATTCATTCACATTTGCTGTGCAAATTCCCTCTCACAGACGAACTTGGAAAGGAAAATGGACCGAGTTGTTGTAAATCTATGTGCTTGGTAATGGGCATGAAGTATACATGACTGGTATGCAGCTGATGTGTGTACCTACGTACCTATCAGCTAGGCTTGCTATATGTGTATCTGTGCCAGTTAGAAATGGGATTGAAATGTTCTAGGAAAATATTTTAGCTTGCTAACACACCAGAATATATTTAAATGTATCGCTTTTAATTTCTTACTAAACAGCAACTTTTGGGTTTCAAGtttattctttttttaaacatgtattttgtatGCAGATCTATTTTTATCCATTTATTTTGTATCAAATCATTTTGAAGCTCTTTTTTTGTAAGAATTGTAAAGCCCTTGTCTCCTTTTTGTATTAAATGTTTTTTAATTATAAAATGCATAGCATTATAATAGGAAATCCCCCCTGACCAAATGAAGGTATGTATCTGTGTCCATCTGATGGGCAGACAGGTGGTGGTGTAGAGGTATTGGCTGAGGATGCAGCATGGAGGGAGCTGCATTTCAATACCCTCCTAGTAATCTGAGTCTTCCACTGAAGGATACTGGGACAAGTAGATGTGATATTGGGAGTTTCAGGGTTTGTTAGCAATGATTTGATATGTTATTGAGTCAACAAGTGTACTGCATTCCATTTGAATAGAATGGAGTCATGACCATTTCTCTCACAAACAACTGtcctccccctcccatctctaCCTCCATGAGGGGGttacggtctaaggcactgcatttcagtgcaagaggcgtcactacagtccctggttcgaatccaggctgtatcacatctggacgtgattgggagtcccatagggcagtgcacattTGGCTCAGCGTCATTcggttttggccggggtagaccgtcattgtaaataagaatttgttctcaactgacttgcctagttaaataaaggttaaataaaaaatgtagacAAGTTAAGGCACGTAGGTTAATTAATGTTATAACTACATTGGTAACCAGACTGTTATTACTTAGATGTGATGAAAGATGTCAACATTGTATTTACATTAGTTACATGTTACACCAATGAATTATATTAGAATTCTATCTAACTGCTTGTTATCCACTGTCAATGCTTCCTTGGCCATTAAGATTTCAGTTCACAAGATGGATGTACATGGATGTTTAAAGATGTATGGATTGGTTTTAAAGCAGCTACAGTATTTTCCTTTTAGATTTTATATGAAATATTCCATAGCAATGTGTGCCATGTGAAATATGTGTTAAGTATTGTCTTTAAAATACTTAGTTAATCATTTACATAGGACCATGCATCACATTCAACTGTATGAGCAGCAATATTGATGTTTCTCAGAATGAGCAGCAATGTGTTTGGTTCTAACAGTGTTGTAGGGAGGAGTGATATGACAGGAACAGTATGAATTGAGCTGTTGACCAACCAATCACAGCGGCAGCATGTGGTGCtcatgttaaaaaaaatacagttccaTAGAGATCCTGTTAAATTagtattctaattctatggacaGTTCACCCCAAATTCTAAGTGCCAGATGTTTGTTAGACGTTTTCCATTCGGTTTGAAGCCTCTAGTTCGGTTTCAACTAACTTAATATATACAATATAGCATCTACACAACTGGTGTCGTGACAAAGTcatattttttgttattgaacATTTTCAGAAAGATTTTGTGGTGAAGTAGGTTATCCCTTGAAAGTGAAGTACTGAGGGCTGGGGTTCACTGCCATAAGCTAAGGAGCTGCTGGGTATGGGGGGAGAAGATGACTGTATTTATGTCTAAAACAAAGACTGCCAAATGTTCAGGAAAATAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138572 lncRNA upstream 37027 19987403 ~ 19990796 (+) True G120082
TU138576 lncRNA upstream 66641 19960974 ~ 19961182 (+) True G120085
TU138567 lncRNA upstream 69858 19957694 ~ 19957965 (+) True G120079
TU138543 lncRNA upstream 103219 19924072 ~ 19924604 (+) False G120059
TU138544 lncRNA upstream 103219 19924072 ~ 19924604 (+) False G120059
TU138627 lncRNA downstream 21757 20052669 ~ 20053169 (+) True G120126
TU138698 lncRNA downstream 90000 20120912 ~ 20126334 (+) False G120191
TU138701 lncRNA downstream 90000 20120912 ~ 20124919 (+) False G120191
TU138704 lncRNA downstream 90480 20121392 ~ 20124200 (+) False G120191
TU138706 lncRNA downstream 90480 20121392 ~ 20126334 (+) False G120191
XM_036941117.1 mRNA upstream 55843 19963914 ~ 19971980 (+) True LOC110537299
XM_036941114.1 mRNA upstream 74616 19946090 ~ 19953207 (+) True LOC110537283
NM_001124455.1 mRNA upstream 117471 19898319 ~ 19910352 (+) True ecac
XM_036941057.1 mRNA upstream 135125 19839881 ~ 19892698 (+) True LOC110537257
XM_036941053.1 mRNA upstream 135126 19839881 ~ 19892697 (+) False LOC110537257
XM_036941153.1 mRNA downstream 979 20031891 ~ 20093715 (+) False LOC110534391
XM_036941148.1 mRNA downstream 19163 20050075 ~ 20093717 (+) True LOC110534391
XM_036941198.1 mRNA downstream 114798 20145710 ~ 20165887 (+) False zyx
XM_036941196.1 mRNA downstream 115224 20146136 ~ 20165887 (+) False zyx
XM_021623314.2 mRNA downstream 148342 20179254 ~ 20184791 (+) False LOC110537348
TU138600 other upstream 2840 20018699 ~ 20024983 (+) False casp2
TU138545 other upstream 99346 19924072 ~ 19928477 (+) True G120059
TU138435 other upstream 249488 19768270 ~ 19778335 (+) False LOC110537243
TU138434 other upstream 249488 19775460 ~ 19778335 (+) False LOC110537243
TU138433 other upstream 249488 19775485 ~ 19778335 (+) True LOC110537243
TU138669 other downstream 114821 20145733 ~ 20157110 (+) True zyx
TU138728 other downstream 140170 20171082 ~ 20171381 (+) True G120211
TU138741 other downstream 148496 20179408 ~ 20184625 (+) False LOC110537348
TU138791 other downstream 288827 20319739 ~ 20320256 (+) True G120259
TU138671 other downstream 376950 20407862 ~ 20419128 (+) True G120169

Expression Profile