RNA id: XM_036941148.1


Basic Information

Item Value
RNA id XM_036941148.1
length 3797
RNA type mRNA
GC content 0.52
exon number 23
gene id LOC110534391
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20031891 ~ 20093717 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTATattagagagaggaaggacagagtgaCATCACACAGCAcctgagaagagaggagggaagatgcAGGAGCGTATCAACACATTTGAGACAGGTCTGAATTTAGACCAGATTCTGCTCTACGGGGAGTACAGGGAACAACTGGGTAGCTTTGCCAGGCGGGAAGCAACACGGCTGCTGACAGAGAGACAATGGAGGAAACAGACAGGAGAAAACAACATGGTCAATGCCAGACGGGGGCGTGGCCAACGACATCACAACCCCGTCACCATGGAGTCATATCTCAGCCACACCTCCTCTACAAAGAAGCCCCGCCCCTACTCCAAATGCCAAGACTGTGTGGCTCGTATACAGCGGTACATCGTGACCAAGCTGGGGGAGGACTGGATCTTCCTGGTGCTGCTGGGCCTCACTATGGCCCTGGTCAGCTGGAGCATGGACTACACCAGTGCCAAGAGCTTACAAGcGTATAAGTGGATGCACGGGGAGCTGAGGGGGAATGTCCTGATCCAGTACCTGGCCTGGGTCGTCTACCCTATGGTCCTCGTCATGTTCGCCTCCCTCTTCTGCAACATAGTCGCCCCTCAGGCCATAGGTTCTGGTATTCCTGAGCTGAAGACCATTCTGCGAGGGGTGGTGTTGAAGGAGTATCTAACTCTTAAAGCCTTTGTGGCCAAAGTCATCGGGCTGACCGCCGGCCTGGGCAGTGGCATGCCCGTGGGGAAAGAGGGTCCCTTCGTCCACATTGCCAGTATCTGTGCTGCTGTGCTGAGTAAAATGATGTCCATCTTCTCTGGAGTGTATGAGAACCCCTGTGGTTACACAGACATTCTGACAGTGGGCTGTGCCGTGGGGGTGGGCTGCTGTTTCGGCACTCCTCTAGGAGgGGTGTTGTTCAGCATTGAGGTCACATCTACCTACTTTGCTGTGAGGAATTACTGGAGAGGGTATTTCGCTGCCACCTTCAGTGCCTTCATATTCAGGGTGTTGTCTGTGTGGAACAAAGATGCAGTCACCATCACAGCTCTTTTCCGGACCAACTTCCGGATGGATTTTCCCTTTGACCTGCAGGAGCTCCCAGCCTTCGCTATCATTGGaaTCTCCTGTGGGTTCCTGGGGGCCTTCTTTGTCTACCTGAACAGACAGGTGGTTctagtgatgaggagacagacggCTCTCACACGCTTTCTGACCAAGCACCGGTTAATCTACCCAGGTGCAGTGACGTTTGTCATCGCCACCCTGACCTTTCCTCCTGGATTCGGCCAGTTCATGGCTGGAGAGctGATGCCTAGAGAATGTATTAACTCTCTGTTTGATAACTTCACCTGGACCAAACTGTCTGCCACCGCCCTTCCCCCTGGACTTGGGCGCTCCTCAGCCTGGCTGCACCCCGATGTCAGcgtcttcctcatcctcctcctcttcttcgtcATGAAGTTCTGGATGTCTGCTGTTTCCACGACGATGCCCATCCCGTCTGGAGCCTTCATGCCAGTGTTCATACTGGGGGCAGCATTTGGGCGTCTGGTAGGGGAGATAATGGCCACTCTCTTCCCAAACGGTATCCTGTTTGATGGGATAGTTTATCGCATCCTCCCCGGGGGCTATGCTGTCATTGGTGCCGCGGCCCTGACCGGGGCAGTAACCCACACAGTGTCCACGGCTGTGATCTGTTTTGAGCTGACAGGCCAGATCTCCCACATCCTGCCCATGATGGTGGCGGTGATCCTGGCCAACATGGTGGCCCAGGGCCTGCAGCCCTCCCTCTACGACTCCATCATCCAGGTCAAGAAACTGCCATACCTCCCCGAGCTCAGCCTCGGACACATCAGtaaGTACAACATCTTTGTGGAGGACATGATGGTGCGGAAGGTGAACTTCCTGTCCTCCCAGTCGACCTATCGGGAGCTGGGCTATCTGCTAGACTCCACCTCCCTCAAAACCATCCCTCTGGTCGACTCCAAAGAGTCTATGATCCTATTAGGGTCTATCGAGAGGACAGAGCTGCAAGCCATCTCTGATTGGTGGCTTTCGGCCGAGAGGCGTGTCTTtgagaggggtcaggggtcaccgGGCCAGGGCTGGGAGTCCTTCACTTTCATAgacgaggagggaggagagACCTCTCCAGTACAAGATGAACAGAATAGGCCACTCCCATCCCCCAAACCACAGGAGTCCTCCACCAATCACACCGGCTCAGAGAAGCGTTCCCTCCAGTCTGTGAGGGGAATATTTCAgcgcctcttctcctcttcctcaacCAGCCAGGCTGAAGCTCAGgAATCCATCCCACCTCCACTCACCGACACCATGTCCTCAGAGGAGATCAAAGCCTGGGAAGAAGAAGAGTTGGATAAGCCAATCAGTATGGAGGAGATACGGATTGATCCCTCCCCCTTTCAGCTGGTGGAGAGAACCTCCCTTCACAAGacccACACTTTGTTCTCCTTGCTGGGTCTCAGTCATGCCTATGTTACCAGCATTGGAAAACTGGTGGGAGTCGTAGCACTGAAGGAGTTGCAGAAGGCCATCGAGGGCTCCACCCGTAGTGGGGTAAGATTGCGCCCCCCTCTGGCCAGTTTCAGAGATGCCAACCGTAAAGCGAAGAAGCATGCGGCTCCCCCCTCCACACCCTCCTCCCCCACCAGGGACAGGGAGCTGTGGGgtgagggggggaagagggagggagggggtagtaGGAAGGAGGGGAGCGATGGGTTTAAATGGGAGGTTAAGGaagaaaagggggagggagatggaggaaagagggagggagaggtggtaaGGTTGAAGGATGAGGTGGTTGGTACAGAGGGAGAGGGTGACATGGATGAGGCTAAGGAGGAACCCAGGGGGAACGCAGGAGAAGCAGGTGCCTCCAGTGCAGGTGCAGAGTGTGACACCTCCACCCCCAACAGCCGAGGGACAGACTGTCCCCCTCAGGAGCCTTCCTCCCCCACCTCAccacactcctcctccactcGTATCTTCATTGTGTCATCCCTTCCTACCGTGccggagacagatggagagagggagagcgaagaTTCTGAAGAGCCAATTTAGATGGCGACAGGGAATTCTGTGGATTCTGTTTCTTAAATGAAGACTTTCTCCTCTCTGGCCTCACTCCACTTACCTCATTCAGTGAGCGTTTCAAGGAGAGCGTAACAAGGAGCATCCTGGGTATTGGAGTTCTGTGCAGGCTCATTCGAGGCTCTGCAGATGTTCAGCTTACAGAGAGCAGGAAGAACAGGTGCACACAGtgcttctgggacttgtagttCTGGAATTTCTGGTAGCTAATAATACTTTTTGTAAGTCTCTTTCCTGATCTCAGCAGTTTTTGAAGGATTTTTTTCTACTCAAGACAAACTTCTTTTTCACTATTTCCATTTCTCAGGTTTCTCTCCGTGTCTTTAAAACTACAAAAATGGACAGATGTTCTAAGTTCTTCATCTGTACTTATCATTGTTGGTCTCCTTGTCCCGGTATTGTTGAATGTATGAATGTGTTTGTAGCTAcatggtactgtatgtctgtatcACTGAACTCCATGTATCTTtatgacactgtatatgacagcAATGAAATGTTTGATAATGAAATCACATCATTAATCATGACTCCATGTCTGTCAATGGACTGATTTATATTTGATCAAATCGATTGAACGTTTACTGATTAATGAATATACAGGCTTTAAATTATTACTGTTACCACTGTAAAGCAAATATTGAAATTGTTCATACTGATGCCTATCTACTATTCTTATGGAATACaataaata

Function

GO: NA

KEGG:

id description
K05010 CLCN1; chloride channel 1, skeletal muscle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138602 lncRNA upstream 19163 20027823 ~ 20030912 (+) True casp2
TU138572 lncRNA upstream 59279 19987403 ~ 19990796 (+) True G120082
TU138576 lncRNA upstream 88893 19960974 ~ 19961182 (+) True G120085
TU138567 lncRNA upstream 92110 19957694 ~ 19957965 (+) True G120079
TU138544 lncRNA upstream 125471 19924072 ~ 19924604 (+) False G120059
TU138698 lncRNA downstream 27195 20120912 ~ 20126334 (+) False G120191
TU138701 lncRNA downstream 27195 20120912 ~ 20124919 (+) False G120191
TU138704 lncRNA downstream 27675 20121392 ~ 20124200 (+) False G120191
TU138706 lncRNA downstream 27675 20121392 ~ 20126334 (+) False G120191
TU138700 lncRNA downstream 29287 20123004 ~ 20123852 (+) False G120191
XM_036941134.1 mRNA upstream 19142 20018602 ~ 20030933 (+) False casp2
XM_036941141.1 mRNA upstream 19142 20018677 ~ 20030933 (+) False casp2
XM_036941136.1 mRNA upstream 19142 20018764 ~ 20030933 (+) False casp2
XM_036941117.1 mRNA upstream 78095 19963914 ~ 19971980 (+) True LOC110537299
XM_036941114.1 mRNA upstream 96868 19946090 ~ 19953207 (+) True LOC110537283
XM_036941198.1 mRNA downstream 51993 20145710 ~ 20165887 (+) False zyx
XM_036941196.1 mRNA downstream 52419 20146136 ~ 20165887 (+) False zyx
XM_021623314.2 mRNA downstream 85537 20179254 ~ 20184791 (+) False LOC110537348
XM_021623307.2 mRNA downstream 85537 20179254 ~ 20185250 (+) False LOC110537348
XM_021623329.2 mRNA downstream 96568 20190285 ~ 20196858 (+) True nop2
TU138600 other upstream 25092 20018699 ~ 20024983 (+) False casp2
TU138545 other upstream 121598 19924072 ~ 19928477 (+) True G120059
TU138435 other upstream 271740 19768270 ~ 19778335 (+) False LOC110537243
TU138669 other downstream 52016 20145733 ~ 20157110 (+) True zyx
TU138728 other downstream 77365 20171082 ~ 20171381 (+) True G120211
TU138741 other downstream 85691 20179408 ~ 20184625 (+) False LOC110537348
TU138791 other downstream 226022 20319739 ~ 20320256 (+) True G120259
TU138671 other downstream 314145 20407862 ~ 20419128 (+) True G120169

Expression Profile