RNA id: XM_036941185.1


Basic Information

Item Value
RNA id XM_036941185.1
length 5612
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC110537330
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20094421 ~ 20131881 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggagagacagtgtgCAGGACAGCGAGTGAGAGCgaagcgagcaagagagagaagcgtgagagagagaatgtatggTGTCAGGGTAACGCTTCCTTGCTTGTATCCAGGGCCTTTGTGAATACACCATGGGATGCATCGGCTCACGGAGACTCAcGGCAGATGGAGTGCCAGTAAAGGATGGGGAACAGCTGTCTATGGAAGACACCACATCCATCCTGCCTCGTCTGAAGAGGAACAACTCCAATAACTACGGGATCGGTGCTCTGGCTAAGTCCTCACTGACaggTGTGAATCGCTCCATGAAGGACAAGGTGACCAAGCCTACATCCATGGCCCAAGGCCGGATGGCACACATGATCGAGTGGCAGAACTGGGACATGTCTGTGGTGGGCCCGGGGGGTGTCTCCGTCCCACGCAAGTCCACAGCAGAgcaggagatggagagacggtTGGAGAGCGACGCCTACAGCGACCTCAGCGACGGGGAGAAGGAGGCTCGCTTCACCGCAGGTATCCTGCAGCAGTTTGCCATCTCCCAGGCAACGCTCATGGCCTGGACCtccatggatggagagagcatgaGGTCAGGGTCTAACCAGGGCAGTGTGGCCCACCTCAGCGAGGTTAACCAGGAGAGCATCACCAGCCGAGACCAGATATTGCACCACTCCTCTGCGGACATGTGGCCCAACACCTATGTTGCCCAGGGCCTCtactgcctctcctcctctgacgCCTGGGAGCCAATCAGCAACGAGCCCTCCGGAGTGGCCTCTCCCGCTGCTGGCTCCTACGTGATGCAGCAGGGCGGGACTTCCTGTGATGGGTATGATGGGAACGcgttgcagcagcagcagcagcagcagcagttcaACCTACAGCAGCAGAGTCAGCTCCAGCAGCTGCAGCAGCTACAACAGATACAGCACTACCAGCAACAGCAGCTCCTGTATCAGCAACAACAGTCTCTGGAGCAAAGGCTGCACAGCGCCAACCACTCGTTGCAAGCCACGCCCAACAGCACCATCCATAGCCTGGCCCCTGCCACCCACGCCCCATTGGTGGACCTGTGGGGGGCGGGCCAGACAGGATCCTATCACGCTGATATTGGAGGGTACAACATAGGCGTGGCAGCGGTGGTGGAGGCGGCTCTGAATGTTCCGTCTGGGGATGAGGGGGCGGGGACAGACCATTCCCATCTGCTGGAGCAgcaagaggaggaagatgaactGAAGGACGAGGAGCTAACACTCTGCATGGAGCCGGAGTCTGCCACTCTAACACAGAGAGATGAAGCCGTCACCTCCGGGGGCAGTAGTCCTGGGCAACGTAGTCCTGGGCAACGTAGTCCGGGGCGCAGTAGTCCAGGGCAACCAGCACAGCAAATCACAGAGCGGAAGGCCTCTGATGTCAGCTGTGGAGGCATCCAGATTctagaggagaaggaagagaagcaAGGGTCTGCTGTTGCTGCCATGGCAACCAACTGATCGACAGATTGCCCTGAGAGACGTGACAGACTGACCCTCAGCGTCAGGAATGACTTATCATAATAATGAAATATTTATCAATAAATCTGTTCCTTTTCAGGTATCAAACACATTTTTGATGGGATATAAACTCTTGTGACCACTGAAGAGCAGAGGAGGAAGATTGGAAACAGACTCACGCAGTGACAACAGCTGGTCCAACGGACAACTTTTTTTGGAAGCCTACATTCCCagacagaaggaggagggagggatgaatagagggagggatgaatagagggagggatgaatagagggagggatgaataGAGGGAGGGAAAAAAGACTGAGCGAGAAAAAGGAGGTATGAGGGGACGATAAAAAGAAGAGGAGCAGCTGAGCTTGAGACATTTGCATCAGGAAgaggaaacggaggaggagggaatTGAAACGCGCATGCTTTTTAAACAAACGACTTTATCCAGTCCAGCGTCAAATATGATAATGATCATTACATCTATAGTAATAAAACATTATCATGACAACAATGATTTTCTAACAAAGAAAACAATCATGACAACACAAAAATCTATGTATAAGTGAATGATCAAAGAATATATATCAAAATCACTGTTTTTAAAAAACACTATCTCTCAATGGGAGAACTACTCTGTTTACAGCTTACACTCAACACATCAAATAGAATAATGTCAACCCCATAACTTGAAGAACAGAAACTCACATGTTATCCTCTTATGTCATTCACATCTAGCATCCACAACACTTATAGAACTAACTGCATGAATACAGAGCAACTTTAGTAGGTTGGGTTCATCATAACCCCCTAAAAATTACACCTATTCGATTATCCCCAAAAATGATTTAAATCCAAATTGGCTCTCTGCAACCTAACCACTGCAGTGAAATCTACTTGAACCCTCCTAACACAGTTAGAAAGACAACAACGTTACTATGTTGCTGTGTTCTCCAGATGTCCAAGGTACATAAAGGCTGCAGGCCTGTcggccacacacacagcactgcacAGTTAAAGGAATGTACTGTACAGTAAGATAGTGTGCTTCCTACTCTGTCTTTCCGTATGTTTCTTCAGAATACTATGGAGTACCTGTCCTATAGTGAACTGTATAGACTTTGCACTGAACCTAGGACACGGCTGGCCAGAGAAGACTCAGGGCATGGAGCTCCTTGTAGTCTGCTTGACTGTGCATCATGACTGACAGGTCCGTGTCATGGAGTGAATGGTGAAGAGACAGAGCTGTAGTAGCGAATCCCTTTGCACTGATGCCATCCAACAGATCAGAGGCTGCCTTTGGACTCTGTCACACGTCAATGTCCTTGATTACTGTTCAGAAAGAGCTCTTAGCATCACCAAGAACCAAAACAGAACCACTAGACGAGATGGATTCCGAGCTGTTGTTCCAGGTTCCAAACTAGAGATGGCTGGAGGAAGAGGGAATGCTctggaatgttttggtaccaacAGAAAGAGGATTTAGATTGAGATGTGCTTCTGTTTTAACCCAGATTGTTGTTTTGATGTCAGCTCTTGGGGACAATACCAAGCTTTTCTTTGTGGAGAAAAGATGAGGATAATTTTTTTCTCTGAAAGGTGTAGGATAGAGCTGTTTGAATGGGGTGCTGATTCTTAGAAGGGAAAAACACATCTTCAAAATTGTAACTAATTAATGAGGAGCCAAACACAGGTCTCCTAAACGGCTTGTGGCCACTACTGTCAGATAGATGTAAATACTAATGAGAGAGGATATAAACCATCTCTCACAGTCCCCACTGCAAcagtttctttattttctacacgTCTCAGTCCCAGCTCTTTCCTTTGGGAATCTTCCTGAGCTCCCAAATGAAGCGTATTGCGTTTAGATTGGTTTCTATCACCACACAAGTAAAAGGAAAAGGATAGTGGAATGTCAACATTGTAAATAGTGTGAACGTTAAAGTATTGGATATCGGAATATTGCTTTAAAATAATGCAAAGGACCTCATTTGACTGGGTCTAAGGAGAACATTGAAGTCAATCAGggaatagaactgaatagaagAACCAAACACTAGAACCGAACAGAACCGGTATCTTCCTGCTCATGGTGACTACAACGATGGAGCAAAACTCTGCCTGAGTCGAGTGTGACGTTTGAGTTAGCGTGTGTATTTCCTGAAGAGGAAAGTGTGTATCCCAACGGAGGAATGGTAGTGAAGTTCAGAGACATGATAGAATAGTGGAATTTTGGAGATACTGGTCTGGAGTATCTGTGCACGTGTCACTAATAAAAACCACAACAATagcagttattattattattagtattcttattaatattattattaatattactattatttgacGGCGAACAACCTTCTCCTTTCACTCTGATGATTGTGTGAAAAAAACATTAAGATAGATAAAAGGTTTAATGACTTGAATTCATTCATTTATTGATTGATTATTTATGCAATGTTGGGACAATGTTTATTTTTCTACTGAATGATTGACACGTCCTCCAGTATAAGACAGAATATGTGTGGTTGATGTAGAGCAGTTTCGTGTTGGTTGGGGCTCTCTCTGATCGGACAAACAGACAGTGAAAACTTCTGGAGGGCTACAATGTGGCCACAATTAATTGTAATCAGTTGTGTTAAAGCTGGTCTGGAACAAAACCCTGCACACACTGACTGCATCCCTCCAGGACaagggctagggttaaggttacccACCTCTTCCCTGGAGCTGTCCATCATGAAACACACAATGATGTCATTTAtatagtcataaccagtcatGAAGATTCATGTCACAGCTGCCATGATCACCCAGGCAATGACAACGCAACCTCAACCACACAACTTCCTTTAGGCTACTAGTCATAAGTGTACATCAGCTGTCATGACACGTATGACGTGTCTGCAAGACAGGATGCATATTGGTGTTAGAACTAACCAAGGCTAGGAGTCTATCCTGACCACGTGACCTGACCAGGATAGACTCAGCGCCCCTACTTCTAACAGATGGTTCTGGTGAGCTGCAACCTTGTGGTGTTCTTCAGTTTGTGTTATGCATTAGCCTTCACCTGTCTGTCTCAGACTGGCTCTGAGAGCTACAACCTACAGGATGTCTTTACCCAACCACTcttattaatttatttatttcgtGATTATTTGGGGGGAGGAATAACATGACAGCCTGTACATAGTTTATTATTTATTGTAGGTAAGTCTTTTTGAAGCAgtattgttctgtgtgttgtccttgggACTTTCTGTAGTGATAGACCTTTGACCCCAGAGAGATTGTTCTGCTTCTTTGAAAGCACCAACATGGACCCAGAGAATGATACTACTTCAACAAAGATATTTTATTGATTCTTTTGACGATTAAGAACTTAATGAATTAATAAACTAACAACAAGAAGCCAAATGTATTTCCTTGAATGTTCCTGTTTATCGATTGTCtttgttgattgattgactgattgatttccAGTTGATTTCTTGTTATATATGATTCTACTGCCATCTTTCAATACGTAACGTTTGGCCTTTCTAGCCCTTGCTCTCTCTTTGTACCTGTTCTGTATATttgtgtctctgtttgtctgagtctgtctgtccatGTAGTTGTCTGTTTTCTTGTTGGAAGAATCACTGCCTGAAAACATTGTTTAAAAAATCTGACAGATTGACCAAATTTGAGgcaaacatacatttttaaaaaatgatgtAGTCAGTTGGAACTGTGTGGCACAGAACCCTGAGGTAAATACACTTGTATACAATTGGGTTGATTGAATGTTTTAATTtgagatgatcaatgtaaacTGGCAAGACCAGTATATTAAAGCCCATACCTATGCATGCTTATGGGAAGGTTGTGACGGGATGGTTCTTCCACGtggtctcccctcccttcctcctcggCCGTAAACCTATAtctttctcttttcctccccctctctctttcccctgcacGAGCGAACACCCTCTTCCATCCCTTTCCCCTCTACTCCAttctctttcttctccccctcctcccctcctccccactatCCAAATAAAAGAAAAACGGTGGAGAAAGAGCAAATAAACACACAAAGAGAATCCTga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139709 lncRNA downstream 18176 20069603 ~ 20076245 (-) True G121005
TU139687 lncRNA downstream 41249 20052654 ~ 20053172 (-) True G120997
TU139640 lncRNA downstream 140641 19953549 ~ 19953780 (-) True G120953
TU139609 lncRNA downstream 201770 19891200 ~ 19892651 (-) True G120925
TU139597 lncRNA downstream 212506 19880288 ~ 19881915 (-) True G120916
TU139758 lncRNA upstream 1541 20133422 ~ 20133686 (-) True G121036
TU139784 lncRNA upstream 14307 20146188 ~ 20156383 (-) True G121048
TU139797 lncRNA upstream 38320 20170201 ~ 20170409 (-) True G121061
TU139800 lncRNA upstream 42852 20174733 ~ 20175077 (-) True G121064
TU139822 lncRNA upstream 77551 20209432 ~ 20209636 (-) True G121086
XM_021623243.2 mRNA downstream 87578 20001127 ~ 20006843 (-) False LOC110537306
XM_021623252.2 mRNA downstream 87578 20001127 ~ 20006843 (-) True LOC110537306
XM_036933452.1 mRNA downstream 97200 19987402 ~ 19997221 (-) False gstk1
XM_036933463.1 mRNA downstream 97201 19987402 ~ 19997220 (-) False gstk1
XM_021590531.2 mRNA upstream 180745 20312626 ~ 20318150 (-) False LOC110509570
NM_001195275.1 mRNA upstream 222233 20354114 ~ 20356998 (-) True lag-3
NM_001124554.1 mRNA upstream 240224 20372105 ~ 20377151 (-) True tapbpl
XM_036941286.1 mRNA upstream 260096 20391977 ~ 20399493 (-) True LOC110503568
XM_036941300.1 mRNA upstream 281618 20413499 ~ 20420922 (-) False LOC118936525
TU139615 other downstream 165961 19924098 ~ 19928460 (-) True LOC110537275
TU139490 other downstream 398857 19693689 ~ 19695564 (-) True LOC118944062
TU139386 other downstream 606189 19484337 ~ 19488232 (-) False cacng6b
TU139389 other downstream 606189 19485649 ~ 19488232 (-) False cacng6b
TU138073 other downstream 1045391 19048307 ~ 19049030 (-) True G119663
TU139782 other upstream 79187 20211068 ~ 20212367 (-) True G121046
TU139863 other upstream 330801 20462682 ~ 20465789 (-) True LOC110509624
TU139931 other upstream 367015 20498896 ~ 20500587 (-) True G121188
TU139978 other upstream 494676 20626557 ~ 20627700 (-) True G121208
TU140219 other upstream 924717 21056598 ~ 21058849 (-) True G121421

Expression Profile