RNA id: XM_036941198.1


Basic Information

Item Value
RNA id XM_036941198.1
length 4410
RNA type mRNA
GC content 0.49
exon number 10
gene id zyx
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20145710 ~ 20165887 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggggtctaACAGCTGTAGGGGaactgagagagaggggtagaggaaagTTAACAAGCACACTTTCTGTCTCGGTTTGGATCTACAACTAGGGAAAAGGAGAAGGAAGAGATAGATACTGTAGGGGAGGGTAATAGTTTGCTCTCCCAACTGCACACATAGaCAGTAAAACGACAACATGGCTGACTCCAGCGGTAGTAAACCCTTCATGGTGACTTCCTCCATCAACCTCAAAGTCACCACCCCCTCCTTCTACAACCAGCCAAAGAAGTTTGCCTCGGTCAACCCGCCGCGCCCCAAAAGCCAGTCCGACCCGTGGCCTCCCCCGGGCTCAACTCCTCCCGCaggtccctctcctccccccagtctGGTCTCCTCAACACGCGGTGTCGGCACAGCTGTCATTGGTCGAGTTGGAGTGATGCCTCCACCCCCACCATCGCTATGCGAAGACTTcccgccccctcctcctccaatgGACGATGAGCTGCCAGCCCCTCCCCCCAATTGTGCAACCACACCTCCAGCCTCTGATGCCCCTCCCCCtgccttccctccccctcctgcAGTGGATGACCTGCCCCTCCCCCCCGCCCCGCCTGAGGAGAATGCCTGTCTCCCCCGTTCcccgtctccccctcctccaccaccccctccccctctcccagtctctggtcCCAGCAGTGTCCCCAGTGCTGGGGAGAACTCTCAGTGTCTGGAAAAGCAGACTAGTTTTGACAAACAGCTGGGCTCTCTGACTGACCTGCTGTCTGAGATGGAGACCAGAGGACCCTTCAACCCCAAGTTGCCCAGTCAGTactcagctcctcctcctcctgcccccaAGCCTGCAGGTCCTCCCCCCACTGCTCCCAAGCccaacctctccttcctcccccctccagaGATGGGAGACAAGCCCCCTCCTGCTCCCTGGGCCGAGGAGCTCAAACTCCGGACGACACACCGACAAGCCAATAACCCTATATCCGCCCCAGCTCCTGCTCCTGCACCACAGCCATTTGCTAAGGCACCAGTCGGTGCTTCTAAGGCTTTTGGGGGCATGAAAACAGGGACGTCCATGCCTCCTGTGGGGCTGAAGAACCAGAACCACGCCCCGGCTCCATTTGGTGTTGCTCCTAAACTTTCCCCTGCAGCcagctccttctctcctcctcctgccgcTCCTCCCGCCCCACCAGCCAACAAAGTGGCTCCCCCAGCCTTCAATCACTCAAAGCCCTCTTCCATTGACTCTCAGATGACTGTGAGCCTGCCCCCTCCTGCTCCCGTGCCCCCTCCTCAGCCCAAAGCGATGACACCACCACCCTCTTCTTACAGCCAGCCAATGAAATCTCCCCCTTCATCAAAGCCCTCGCCTCCTGGGCCTGTCTCTGTCCCAGGTGGAGGTGTTCCTCTCTCcatgagggaggtggaggagctggagagaATGACCAATGCATTCATCAAAGACATGGACACACACGCTCCCGTCATCACCTCAGcacctacagaggTATGTGGTAAGTGTGGTGAGGCTCTGTCTCGTTCCCAGCCTGCAGTGAGAGCCATGAACAAACTCTTCCACTCTGACTGTTTCTGCTGTATGAGCTGCCATCGCCCCCTGCAGGGCATGCAGTTCTACGACAAGGACGGGACGCCACAGTGTGACGACTGCTACACTAGTTCTCTGGCGGTGTGTTCTCGGTGTGGGGAGCGTATTACAGACCGTGTGTTGAAGGCGGTGGGCCAGTGTTTCCATGCCCATTGTTTCCGCTGCTGCACCTGCGCCTGCAGCCTGGAGGGGGCGCCCTTCATCACCGACGAcgacaacaacccatactgtgTCCCAGACTACCACAGGCGTTTCTCTCCCCTGTGTGTGAGCTGTAATGAGCCCATAGTTCCTGACGCCGGCAGTCAAGAGACCGTCAGAGTCGTGGCCCTCGACAAGAACTTCCACCTCAAGTGCTACCGCTGTGAGGATTGTTCCCGCCCCCTCTCCATAGAGGCGGACGCAGACGGCTGCTACCCATTGGACGGCAGGATCCTGTGCATGAAGTGCCACACCCAGCGGGCCAAGGCTATGCAGTGATTGGTGGACACATCTGTTATTCAAGTCGAACTTTGAACCAAATCCAAGGCACAGGATCCATTCAGCTTCCACCGTTCTGTCTTTGCAACAGGGCTTTACTTgtgcgctctgtgtgtgtgtgtgtgtgtgtgcatgcagatgtcgttatgtctctctcctctgtctgcttATTCCCTCTCTCAGTCCAGAGGTAATGTACTGCACTGAGATagacttcctcctcctctccccgccTTCTCCCTTTGTGTTAATGCCAGTCTTATCAAGGCCATGTTTTGTTTACGCTAAAATTCCCAGCATGTCTTGCACAAGTATAGCTTAGTCATGGGCTGTGTCCCAACAGTCAAAGatggcttcctctcctcttctctctccactgaTTGGAAAACATGTTGAGAAGGTTTCAGCCATACAACTTTGATTTGTCTTTCACTTTTCAGTGGTACAGAAGGAAAAGACGGGAAGTATTTCAGAGTATTTGAGACATAGTAACAGTAGTTTAGTGTAACTCCCTGACCCCAGTGCACGAGGAGTTGAACAAAAGTTTAAGGTGGACTAATTCATGTTCCCCTGCACCTCCCATAGGGCTGAGCTCTGGTGGGCTGGTGGCACCTGAAGCACTTTGGGAGTTGTAGTGCCTGCAAACATACAAGTTGCTTAACTGCCTTTAGAGAGTGCTTTCTACAGAACTACATATCCCATCAGATACAATGTAGCAGAGCAGTGTGCTGTGGGAAATGTAGTTCCTCTTGGGCTAAAAACAGTgcaaaaaaacgaacaaaaataTGTGAATGTCGCTCTcgtttgtttttgttgtgtgcGTTTGTTGCTTTATAGGCATGCATTGCTACAGATCACTGTCAGTTACTCTCACCATTTTATCAAACACAGATTGAGGGTACAATACGATCAAAATGACCATTTATTTCTTTGTCAAAAGAATAGAAGATTTAAGATCATGATTATAGACACTACCTAGAACAAAGGTCAGAAGTTAGCCCGGCACAGATTCCATTCCTATGATCTCCTCATGTTAAATAGAGTGCTGTAGTTTAAAGAGGACCACATGGCTTAGAACAGAACCTACGCTACAGGCAGAAgttgctcttaaccgctaggatcagattaccctacCTCATCCCTAATCTTAATTTAAAGGGGATGGAGGGAAAACGTCGGATCCTGCATCAGTAGTTAGGGGCAACttccaggacctacagtacagtataatcctaTCATCCTCAATGAAGCGCTCTTGAACACATACTTATGTAGTGTGCAGGCGAGTTAAGATATCTAATGATTAACATAGAGATATTACCTCTCATTAATTCAATTCACCTAAAGGTAAACTCATGGATTTTTGCACTATACACCTGCATTTACAAATGCTTAGTATTTTGGGCATTTGCAGCTCTCTGAATAACATGATAAAACTGATTCTGAATCAGGGTTTTAAGTATTATAAACATGCAACAGATCAAATGGCCAGTCTGTTTTCCAGTAGAGTGTAGTAGGTCATTGACTGTAGCAGTAGCATGTAGATCAAACCAATACAGTTCAAGGTGATGGTAACACGTCACTCAAACGCATCACACTTTAAATTCACTGCCTTTGTTTTTGTGGAATTCACTTCAAGTTTTAATCATATTTTGTGTGCTTTACACAGTATattgttcctcttcctctctcataaTACTCCAATGACTACCACTGTTTCCATTATTCCGCTTAGTGTTCTTTTATGTCTCGATATCAGTTATATTTACTCTGCTTGTAATCTTACCATACTGTATTTCATTGATAAGTACTTATTTTCTGTGATTTTTCTGTGAAACTTTGTGAGTTGCCATTTCCACCCTAGTATTCCTATCTCTCCTGTTCAGACTGGTTTGGCACCAAACACCCATCCTTATACAATCCTCAGTCTGGCATAGCAACACAACCCTAATGACCAAACTAACATCCTAAACCATATGGCCAAATACGACTCCATATGCATGTTATCTGGGTCGTCGGTATCATCTTTAGTATTCTCAgttgttttcatttttttatttgcaCACATGATTCCACCCTTGTGACCATGCCTTTGTCTTCACTGTCAGACCATTGGTGTGTGATGATGCCTTCAAAAACACCACGTTGCTCATTTATTTAATGATGATTGCCTTGTTCTTTTCATATAGTTTTTTATAAATTCCTCTTATATTTGTGTGTTTACGGTTCCAAACATGCCAACATTAATTACCAGTACATGTCATTGTTTTTCTTCTTTCATTTTACTGTACTCAAAATAAAACTGCTAATAGCCTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138710 lncRNA upstream 11734 20133774 ~ 20133976 (+) True G120195
TU138698 lncRNA upstream 19376 20120912 ~ 20126334 (+) False G120191
TU138706 lncRNA upstream 19376 20121392 ~ 20126334 (+) False G120191
TU138702 lncRNA upstream 19837 20123004 ~ 20125873 (+) True G120191
TU138701 lncRNA upstream 20791 20120912 ~ 20124919 (+) False G120191
TU138726 lncRNA downstream 3913 20169800 ~ 20170118 (+) True G120209
TU138727 lncRNA downstream 4658 20170545 ~ 20170756 (+) True G120210
TU138729 lncRNA downstream 6162 20172049 ~ 20172445 (+) True G120212
TU138730 lncRNA downstream 7853 20173740 ~ 20174487 (+) False G120213
TU138731 lncRNA downstream 7853 20173740 ~ 20174487 (+) True G120213
XM_036941148.1 mRNA upstream 51993 20050075 ~ 20093717 (+) True LOC110534391
XM_036941153.1 mRNA upstream 51995 20031891 ~ 20093715 (+) False LOC110534391
XM_036941134.1 mRNA upstream 114777 20018602 ~ 20030933 (+) False casp2
XM_036941141.1 mRNA upstream 114777 20018677 ~ 20030933 (+) False casp2
XM_036941136.1 mRNA upstream 114777 20018764 ~ 20030933 (+) False casp2
XM_021623314.2 mRNA downstream 13367 20179254 ~ 20184791 (+) False LOC110537348
XM_021623307.2 mRNA downstream 13367 20179254 ~ 20185250 (+) False LOC110537348
XM_021623329.2 mRNA downstream 24398 20190285 ~ 20196858 (+) True nop2
XM_021623354.2 mRNA downstream 31136 20197023 ~ 20201032 (+) True LOC110537365
LOC110534400 mRNA downstream 36256 20202143 ~ 20228607 (+) False LOC110534400
TU138600 other upstream 120727 20018699 ~ 20024983 (+) False casp2
TU138545 other upstream 217233 19924072 ~ 19928477 (+) True G120059
TU138435 other upstream 367375 19768270 ~ 19778335 (+) False LOC110537243
TU138728 other downstream 5195 20171082 ~ 20171381 (+) True G120211
TU138741 other downstream 13521 20179408 ~ 20184625 (+) False LOC110537348
TU138791 other downstream 153852 20319739 ~ 20320256 (+) True G120259
TU138671 other downstream 241975 20407862 ~ 20419128 (+) True G120169
TU139024 other downstream 734387 20900274 ~ 20973920 (+) False erfl3

Expression Profile