RNA id: XM_021623314.2



Basic Information


Item Value
RNA id XM_021623314.2
length 1213
RNA type mRNA
GC content 0.52
exon number 5
gene id LOC110537348
representative False

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20179254 ~ 20185414 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGTTGTTGGAGGTACGTCTTTGTCAGTTTCGCTCAGAAAATGCAGTCTTCGTCAATCTGCCGCCATAGACGGCCGCCTCTGTCTAGTTATTCAAAAGAGCGGTAGAACCTTGGCAAAACTCCTCCATCAGTATGACGCGTTATTCCAGCGACTACCACCCCGAAGCAACATGGAAGCCCACAGTGGTGACAAGCGTGGTCTTGAGCATTTAGACGAATATGAACCCAAACCAGCAAAACATATGCGTAGCCTGCACGATCGCATGGTGGAAAGGCGACTAGTAGTTATTTTAGAGGGGGCAACGCTGGAAACAGTGAAGGTTGGCAAGACATTTGAACTGCTGAACTGTGACCAACACAAGGGCATGATCATCAAAAGTGGACGGGACCCAGGGAAGATTCGACCTGACATTACACATCAGTGTTTGTTGATGCTGATGGACAGTCCATTGAACAGGGCAGGTCTCCTGCAGGTTTACATCCACACAGAGAGGAACGCCTTGATTGAGATCAACCCACAGACACGCATCCCCCGAACCTTCAACCGCTTCTGTGGCCTCATGGTCCAGCTCTTGCACAAGCTGAGTGTGAGGGCGGCTGACGGCCCCCAGCGCCTGCTGAAGCTCATCAAGAACCCTGTGTCAGACCACCTGCCCCCTGGCTGCCCCCGTATTTGTACCTCGTTCTCCTCTGGGGAGGCAGTGGGCGCCCGCACCGTGGTACCAGAGGAGGGGCCCGCCACTGTGGTGGTCGGAGCATTTGCACACGGAGCGGTGAATGTGGACTACACAGAGAAGACTGTTTCCATCAGTAACTACCCTCTCTCTGCTGCCCTCACCTGTCTTAGGTGAATGTGGACTACACAGAGAAGACTGTTTCCATCAGTAACTACCCTCTCTCtgcttgtcctctcctgtcttaGGTGAATGTGGACTACACAGAGAAGACTGTTTCCATCAGTAACTACCCTCTCTCTGCTGCCCTCACCTGTCTTAGGTGAATGTGGACTACACAGAGAAGACTGTTTCCATCAGTAACTACCCTCTCTCtgcttgtcctctcctgtcttaGGTGAATGTGGGCTACACAGAGAATACTGTTTCCATCAGTAACTACCCTCTCTCTGCTGCCCTCACCTGTCTTAGGTGAATGTGGACTACACAGAGAAGACTGTTTCCATCAGTAACTACCCTCTCTCtgcttgtcctctcctg

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU138730 lncRNA upstream 4767 20173740 ~ 20174487 (+) False G120213
TU138731 lncRNA upstream 4767 20173740 ~ 20174487 (+) True G120213
TU138729 lncRNA upstream 6809 20172049 ~ 20172445 (+) True G120212
TU138727 lncRNA upstream 8498 20170545 ~ 20170756 (+) True G120210
TU138726 lncRNA upstream 9136 20169800 ~ 20170118 (+) True G120209
TU138748 lncRNA downstream 382 20185173 ~ 20185414 (+) True LOC110537348
TU138686 lncRNA downstream 26665 20211456 ~ 20212371 (+) True G120184
TU138668 lncRNA downstream 31427 20216218 ~ 20223636 (+) True LOC110534400
TU138769 lncRNA downstream 83707 20268498 ~ 20270723 (+) True G120238
TU138786 lncRNA downstream 127609 20312400 ~ 20312765 (+) True G120254
XM_036941198.1 mRNA upstream 13367 20145710 ~ 20165887 (+) False zyx
XM_036941196.1 mRNA upstream 13367 20146136 ~ 20165887 (+) False zyx
XM_036941148.1 mRNA upstream 85537 20050075 ~ 20093717 (+) True LOC110534391
XM_036941153.1 mRNA upstream 85539 20031891 ~ 20093715 (+) False LOC110534391
XM_036941134.1 mRNA upstream 148321 20018602 ~ 20030933 (+) False casp2
XM_021623329.2 mRNA downstream 5494 20190285 ~ 20196858 (+) True nop2
XM_021623354.2 mRNA downstream 12232 20197023 ~ 20201032 (+) True LOC110537365
LOC110534400 mRNA downstream 17352 20202143 ~ 20228607 (+) False LOC110534400
XR_005039496.1 mRNA downstream 18112 20202903 ~ 20203211 (+) True LOC118944183
XR_005039495.1 mRNA downstream 20039 20204830 ~ 20205130 (+) True LOC118944182
TU138728 other upstream 7873 20171082 ~ 20171381 (+) True G120211
TU138669 other upstream 22144 20145733 ~ 20157110 (+) True zyx
TU138600 other upstream 154271 20018699 ~ 20024983 (+) False casp2
TU138545 other upstream 250777 19924072 ~ 19928477 (+) True G120059
TU138435 other upstream 400919 19768270 ~ 19778335 (+) False LOC110537243
TU138791 other downstream 134948 20319739 ~ 20320256 (+) True G120259
TU138671 other downstream 223071 20407862 ~ 20419128 (+) True G120169
TU139024 other downstream 715483 20900274 ~ 20973920 (+) False erfl3
TU139026 other downstream 790060 20974851 ~ 20976199 (+) True erfl3
TU139028 other downstream 806963 20991754 ~ 21015891 (+) True LOC110509768

Expression Profile


XM_021623314.2 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 3.
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XM_021623314.2 Expression in each Bioproject

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XM_021623314.2 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 40.
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