RNA id: XM_021623329.2


Basic Information

Item Value
RNA id XM_021623329.2
length 2895
RNA type mRNA
GC content 0.48
exon number 16
gene id nop2
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20190285 ~ 20196858 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATTAGCATTTTGCCTTCGTATATCACATGCGCCGGAAACGCATGTTTGTTTCTTCCGTGAATCAACCTGCGCTCGGAAAAAAACACGTGCGTACATTTAATCTGTGAACTGGAATCAAGGATCGAATAAATACATTATACTTTAACTATTGCAAAGACTACCTGTGTAGGTGTCAGTCATGGGCAGGAAGTTGGATCCCACCACTTATGTGAAGAAGGGGCCGGGGCGGAAGTCCAGGAAGCAGAAAGGAGCAGAGACTGAGCTGGCCAAGTTCTTAACGGATGAGGATACTGCACCAAAACGACTGTCAAGCAGGTCCAGGAAAAGAGCTGGGAAGCGAGCTCAAGTGACCAAAAAGCCCAAGGAAAGCATTGAGAAGGAGGAGCCAAAAAAAGGATTCACAGATGAAAATAGTGAATGGCTGAAGCCAGCAAAGAGGAAGCGTGAGGTCGGCCAATCGGATAACGAGGACGACAGTGACAGCCAATGGGAGCAGGAAGAGGACgagggacaagagggaggggagaacaaTAAAGGGAAAAAACTGCTAATTGAAGGAGATGGTGACGATGATGACCTGGTTGATGACTACGGTGCATTGGAGGACagcagtgaaggagagggagaagtagatGGTGATGGAGAGGAGCTGCTCCCCATCGAGCGAGCTGCCAGGAAGCAGAAGAAGCTGCAGGAAGCCATGGGCCAGGAGAGTGATgacgatgatgaggatgatgataagAGGACGAGTGGAGATGAAGACATGGATGAAGATGACACAGTACAGGCTAATTTAGATGAGATGGACAAATTCATTCTACCTGGAGCAGAGGAAATAGCAAAAGAGGGCGTTTTGCTTGTAGACCTGCAGACCATCCACCAGAGAATAAAGGACAACGTGGACGTTCTCTCTCACTTTGCTAccaagagggaggaggggaaagagagaacagagtacCTCTCTCTCCTCAAAAAGGATCTTTCCACTTACTACAGCTACAACAATTTCCTCATAGACAAACTGCTGGATATCTTCCCAGTGTCAGAGCTGATTGATTTCCTGGAGGCCAATGAAATTCAGCGACCTGTCACCATTCGGACCAATACACTGAAGACGAGGAGGAGGGACTTGGCTCAGGCCCTGATCAACAGAGGGGTGAATCTGGATCCTCTGGGGAAGTGGTCTAAAGTGGGCCTGGTCATCTTTGACTCCTCAGTACCCATCGGTGCGACCCCAGAGTACCTGGCTGGTCACTACATGCTGCAGGGAGCCTCCAGCTTCCTGCCTGTCATGGCTCTCTCTCCCCAGGAGGGGGAGACTGTGCTCGACATGAGCTCAGCTCCCGGGGGAAAGACCACCTATATGGCCCAGTTGATGAGGAACACAGGAGTAATTGTGGCCAATGATGCCAGTGCTGACAGACTGAAGAGTGTGGTGGGCAACATCCACCGTCTGGGAGTCACCAACTCAATGATCTGTAACTACGACGGGAGGCAGTTCCCTAAGGTAATGGGTGGGTTTGACAGAGTGCTGCTTGATGCTCCCTGCTCAGGCACAGGAGTAATCTCCAAAGACCCTGCTGTGAAGACCAGTAAAGACGAGTCTGACATCCAGCGGTTGGCCCACTTGCAGAAGGAGCTCATCCTGGCGGCCATCGACTCGGTCAACGCTGAGTCTCCCTCTGGAGGCTATCTGGTGTACTGCACATGCTCTATCATGGTGGAGGAGAACGAGTGGGTAGTGGACTATGCTCTCAAGAAAAGAAACGTCAAACTCGTCCAGACTGGACTGGACTTTGGCAAAGAAGGTTTCACCAGATTCAAAGAGAGACGATTCCATCCCTCTCTGAAACTCTCACGCCGGTTCTATCCTCATTCCCACAACATGGACGGTTTCTTTGTGGCCAAGCTGAAAAAGTTCTCCAACACGGTCCCAACCACAGCAGTTGAAAAGGACGGAGAAGAGGAAACCAAGCCATCTGAGGCAGTAGAGGTTACAGCTGATTCCTCTGATGAGGACGGACCATCTAATGCAGGGTCTAAGAACAAGTCCAAGAAGCAGAAGCCAGTCCCTGGCAAGCCAGCTATGTCACAGAAGACCACAGCCAACGGGAAGCCAGCCAAAAGCATTGGCAAGAAAACAACAAACCCAAGCACCTTGAAAAAGAATGAGAAACCAACTGGGCCGAAAAAGGCAAAGATCGCTAAGATGGATGGTGGGACTGTGAAAGTGGACGGAGAGCTCAAGAAGtccaacacagtcaaaacagaaGGGGAGACGACCAAAGAACTAAAGGAAGGGAGCAGGTTTGAGAAAAAGGGCGATAAACAGAGGAAATCCCCCATGCAGAGCAAGAAGAGAATGGGGAAGAACAAATTCAATAAATTGAAGAAGCTGCTGAAAAAAGAAGAGGTTGGACAATGAACATGTATAAGATGTTTATGAAAATGAAGACTAATTATTTTGCAGTTGTCACTTGTCAGAGAGGTCTAATTGTTATGACAGATAAGTAATTTTCACAAGAGTTAAATATTGCCTCCCTCCGGACTGAAAATCACTGCAGCAGGCCCTCCATCGAGGGTCCTGAGCCCCTGCCCCCTTTGGAGTAGTAGATGTTGTCCCTAACCACACAGATACTAGAACAGATATTTTTCATGGCCTCGTGGATGATTGGTTTTAGGTTAGGAATatggtaatctgatcctagatctgtggttgaGGGCAAAGTTCTAACTTCAACTCTTGTTAAACATTTTAACATTTCACATTTTATTCCTTCCTTGCAATGTTATCTGTTTGGTTTAATTACATTGTGTCTTTTGATCAAATTGATATGTATTGTAAAGACTAATCCTTGAGACAATAAAATGTCTCTGTTTGCCATATACCCCCA

Function

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0032259 methylation biological_process
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14835 NOP2; 25S rRNA (cytosine2870-C5)-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138748 lncRNA upstream 4871 20185173 ~ 20185414 (+) True LOC110537348
TU138730 lncRNA upstream 15798 20173740 ~ 20174487 (+) False G120213
TU138731 lncRNA upstream 15798 20173740 ~ 20174487 (+) True G120213
TU138729 lncRNA upstream 17840 20172049 ~ 20172445 (+) True G120212
TU138727 lncRNA upstream 19529 20170545 ~ 20170756 (+) True G120210
TU138686 lncRNA downstream 14598 20211456 ~ 20212371 (+) True G120184
TU138668 lncRNA downstream 19360 20216218 ~ 20223636 (+) True LOC110534400
TU138769 lncRNA downstream 71640 20268498 ~ 20270723 (+) True G120238
TU138786 lncRNA downstream 115542 20312400 ~ 20312765 (+) True G120254
TU138690 lncRNA downstream 128244 20325102 ~ 20326230 (+) True G120188
XM_021623307.2 mRNA upstream 5035 20179254 ~ 20185250 (+) False LOC110537348
XM_021623314.2 mRNA upstream 5494 20179254 ~ 20184791 (+) False LOC110537348
XM_036941198.1 mRNA upstream 24398 20145710 ~ 20165887 (+) False zyx
XM_036941196.1 mRNA upstream 24398 20146136 ~ 20165887 (+) False zyx
XM_036941148.1 mRNA upstream 96568 20050075 ~ 20093717 (+) True LOC110534391
XM_021623354.2 mRNA downstream 165 20197023 ~ 20201032 (+) True LOC110537365
LOC110534400 mRNA downstream 5285 20202143 ~ 20228607 (+) False LOC110534400
XR_005039496.1 mRNA downstream 6045 20202903 ~ 20203211 (+) True LOC118944183
XR_005039495.1 mRNA downstream 7972 20204830 ~ 20205130 (+) True LOC118944182
XR_005039493.1 mRNA downstream 8882 20205740 ~ 20206032 (+) True LOC118944180
TU138741 other upstream 5660 20179408 ~ 20184625 (+) False LOC110537348
TU138728 other upstream 18904 20171082 ~ 20171381 (+) True G120211
TU138669 other upstream 33175 20145733 ~ 20157110 (+) True zyx
TU138600 other upstream 165302 20018699 ~ 20024983 (+) False casp2
TU138545 other upstream 261808 19924072 ~ 19928477 (+) True G120059
TU138791 other downstream 122881 20319739 ~ 20320256 (+) True G120259
TU138671 other downstream 211004 20407862 ~ 20419128 (+) True G120169
TU139024 other downstream 703416 20900274 ~ 20973920 (+) False erfl3
TU139026 other downstream 777993 20974851 ~ 20976199 (+) True erfl3
TU139028 other downstream 794896 20991754 ~ 21015891 (+) True LOC110509768

Expression Profile