RNA id: TU138668


Basic Information

Item Value
RNA id TU138668
length 2775
lncRNA type sense_over
GC content 0.46
exon number 7
gene id LOC110534400
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20202143 ~ 20228607 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTTATACTCTGTAGGAAGGATGGGGACTTAATTGAAGAAAGCTTAATGATGATTGCTGGTTGTTCTTCCCACATTGAGATGCACTGAAGCCATACGCCCTCCCCCATTGAAAGTTTAATTACAATTCGTTATCTCTTCATTCCACTAGTTCTGTTTGTCTTTGTATAGTGCTAATTATGATGCTTGGTTATTCTTACGTTTGAGGTGTTTCAGATGAATAGTGTTTTCCAGGCTTTTCACTATGAACACTAATCCCCAGGTTTTTCCTCATGGTAAGTGTTTTGTAGCGGTCAGTAATTGTCTCCCACACACCTCCATTGTGTTGGGTCTCCTCAAAGACAGACAGCCCTCCCTGGGAGAGGACTGATAAGGGTATTAAACATGTTTTGTTTTACCCTAATGGTAATGCACTGTTTTACATGCCTAGTTAATTATACTGAAGCTGTGGCTTATGACCATCTACTGTATAGCAGACCACACACCCGGCGAGTCCAGTTCCTCTGGAAAACATTCTAATCCACTGGAGGTGAAGTTGCTTATTATTTTTTCACCTGGCCTCATCCCTTCCCAGTGTGTGTGGTTAATTCCCCTGTTTAGAACAATGGAGGCCAGGGGAGACACTGCAGCCTTTTGTCTTAGTGCTCCCTCAGAGTAGAGGCCCTCTACCTCCCACACGTACATCTGAAATGACTGCAGAGGATTATGGTCAGGGGTATTGGCAACTTGGCATCGACGCCTCCATGTCCAGTGTATGGCTGGTCGTATTCTCACCCAGGCTGAGTGACAAGATACCTGGCGGTGAGGCAGACTGCAGTGACTGTTATGACCCAGCTAGTGTTGAAGGTCAAAGGTCAGGTCAGCGAGGTGGCTGTACTGCTCATCGACCCCCAGACACACATCACCAGCCTCGCACTCAACTTCTTCAACGAGCTCGCCAAGGCAGCTGTTTTCCTACATCACTAAGGAGAGACAGACTGAGTCTCTGGGGGAGAAGCTGTGTCAGCGCTTCAGGACAGACAAACTGAGCGTCAGTGGTGTGAGCTGGCCGTGTCTGTCGTCTGTGTGAGCGAGGGCTGAAGAGGCTCCAGGAGTGTTGGGAGTGTTAGTGACAAGCTGACTGAGACAGTctaccagcctctcctctccatcactgCTAAGCTACGCCGAGGAGCCAAGCCACAGCTCAAGGTCCAGGTGGAGGAGTTTGAGAAGCATCTGACGGAGCCACACACGGGGGCTGAAGAATGTAGAGAGCCCTGAGATGGAGAAGAACCAGCCAGAGGGAGCTGGGCCCAGCCAGAACACCACTCATACGCCACTACCCAACAAGGGACAGGGTGGCAGGCCCAAGAGAGGTCAAGCCAAGCTCTCTGTATCCAGTCACCACGACGATAGCTTTGTGACCCCTAAACCAACCCAGAAGTCCTCTAAGAAAGCTGTTATCACCTTCAGCAGTGACGAAGACGCTGTCATGGCAGAGAGCGAGACACCTAAGGTGACCACACCCATCGCCCGCACCTCTCGACGTGCTCGTCTCCACTGATCTTCCTCTGCTTTTAGTTTCACATGTCCTGTTCTATTGTTTTGTCGTCTTTTTTAAATCATGTTTTCActttaactttaaaaaaaatcttctgTAATGTTCCTCTAGTCAGCACTAAATACTTTGACTCAGTCTTTTTGTAGCGGAATCAACTTTGGTGTGAACCACACTACCTCTGTCATCCGTGTGTGTTTGCAAGTGGAGTCAGATTTATGCCCTCATTACAAGGAGTAATGAATGCCCTTCTCTTGCATTGTGTGTTCGGTCAGTGAAATAGTGTGTTCAGGTTGGATTGTCACAGCTTGGCTAgacactgttgctaccgttcttactccttcactctctcctccatGCTCTCCTATATCTGCCAGCTTGAAATATTCTGTAATCCCACCTGTTAGAAACAGTTTACCTAAATCCTCCTGAGACCCAGCAATTCAATTTTGTCCTCTAGTGGACATATAGTTCTCGGTCCGCATCTGAGGCCATACATGCcactttatttattattatttggcTTTTCAATTGTCACTTGAGGGGGGGGTTCATATTTATGTTTTGACCACTAAAGAGGACACTTTGGCACATACTAAGAAAAGTTTTAAAGTAACATGCTGTTTTCACCACAAAAcacttatgtaaaaaaaaatatcccaaaccTTTTATCCGGTTCTCACCTGGTTTATGAAGTGCCTGACACCTGAACAAAATGGTAGCATGTTATTTGAGGTGGAAaaaaacgcacacctatttaggtgaggtgctggttAGCAGAGTGGAACACTTTATTTAAAATTAAGGAGAGCATGTTATTTTATGCAACTTCACTCCCTATTTCTCCCTCTGACACGTGCTGCATCTCTACCCCTCTAATTGATCTCCAAGGTCTTCCCCTCTCCCACACCTCTTCCATGCTCTTTCTGCCTATGTTACGTTCCTCGGTCGCTCTCCTCCTTCACTGACATCGTCATGCTTTAActtcaccccctcccctctcttttgtAGCtagtctcttccctctcctctcgccCACTCTATACCGCccactcgctccctctctccttttaaATGACACAGAAGTGCACTTCTGTTTTTGTGAGTTATGTAAAGGGAAAAAACACCTTTTGCTGACTTCAGACTAACAATATAGTTTGCCAACGTAGAGTTTATAAACCCAATCTGACAGACATTGTGTTTGAAGACTTGAATATATTGTGAGAAACTAAAGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138686 lncRNA upstream 3847 20211456 ~ 20212371 (+) True G120184
TU138748 lncRNA upstream 30804 20185173 ~ 20185414 (+) True LOC110537348
TU138730 lncRNA upstream 41731 20173740 ~ 20174487 (+) False G120213
TU138731 lncRNA upstream 41731 20173740 ~ 20174487 (+) True G120213
TU138729 lncRNA upstream 43773 20172049 ~ 20172445 (+) True G120212
TU138769 lncRNA downstream 44862 20268498 ~ 20270723 (+) True G120238
TU138786 lncRNA downstream 88764 20312400 ~ 20312765 (+) True G120254
TU138690 lncRNA downstream 101466 20325102 ~ 20326230 (+) True G120188
TU138795 lncRNA downstream 117338 20340974 ~ 20341290 (+) True G120263
TU138800 lncRNA downstream 131102 20354738 ~ 20355147 (+) True G120268
XR_005039497.1 mRNA upstream 7067 20208863 ~ 20209151 (+) True LOC118944184
XR_005039493.1 mRNA upstream 10186 20205740 ~ 20206032 (+) True LOC118944180
XR_005039495.1 mRNA upstream 11088 20204830 ~ 20205130 (+) True LOC118944182
XR_005039496.1 mRNA upstream 13007 20202903 ~ 20203211 (+) True LOC118944183
XM_021623354.2 mRNA upstream 15186 20197023 ~ 20201032 (+) True LOC110537365
XM_036990250.1 mRNA downstream 3985 20227621 ~ 20232135 (+) False cnp-1-2
XM_036990256.1 mRNA downstream 3991 20227627 ~ 20232135 (+) False cnp-1-2
NM_001124210.1 mRNA downstream 4210 20227846 ~ 20232215 (+) True cnp-1-2
XM_021623341.2 mRNA downstream 19794 20243430 ~ 20249298 (+) True LOC100329212
XM_036941236.1 mRNA downstream 26653 20250289 ~ 20259650 (+) False opn9
TU138741 other upstream 31593 20179408 ~ 20184625 (+) False LOC110537348
TU138728 other upstream 44837 20171082 ~ 20171381 (+) True G120211
TU138669 other upstream 59108 20145733 ~ 20157110 (+) True zyx
TU138600 other upstream 191235 20018699 ~ 20024983 (+) False casp2
TU138545 other upstream 287741 19924072 ~ 19928477 (+) True G120059
TU138791 other downstream 96103 20319739 ~ 20320256 (+) True G120259
TU138671 other downstream 184226 20407862 ~ 20419128 (+) True G120169
TU139024 other downstream 676638 20900274 ~ 20973920 (+) False erfl3
TU139026 other downstream 751215 20974851 ~ 20976199 (+) True erfl3
TU139028 other downstream 768118 20991754 ~ 21015891 (+) True LOC110509768

Expression Profile