Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_021623341.2 |
| length | 1398 |
| RNA type | mRNA |
| GC content | 0.53 |
| exon number | 11 |
| gene id | LOC100329212 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 20243430 ~ 20249298 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0051402 | neuron apoptotic process | biological_process |
| GO:0006096 | glycolytic process | biological_process |
| GO:0035606 | peptidyl-cysteine S-trans-nitrosylation | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0000226 | microtubule cytoskeleton organization | biological_process |
| GO:0050821 | protein stabilization | biological_process |
| GO:0005829 | cytosol | cellular_component |
| GO:0015630 | microtubule cytoskeleton | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0050661 | NADP binding | molecular_function |
| GO:0035605 | peptidyl-cysteine S-nitrosylase activity | molecular_function |
| GO:0051287 | NAD binding | molecular_function |
| GO:0008017 | microtubule binding | molecular_function |
| GO:0004365 | glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity | molecular_function |
| id | description |
|---|---|
| K00134 | GAPDH, gapA; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU138668 | lncRNA | upstream | 19794 | 20216218 ~ 20223636 (+) | True | LOC110534400 |
| TU138686 | lncRNA | upstream | 31059 | 20211456 ~ 20212371 (+) | True | G120184 |
| TU138748 | lncRNA | upstream | 58016 | 20185173 ~ 20185414 (+) | True | LOC110537348 |
| TU138730 | lncRNA | upstream | 68943 | 20173740 ~ 20174487 (+) | False | G120213 |
| TU138769 | lncRNA | downstream | 19200 | 20268498 ~ 20270723 (+) | True | G120238 |
| TU138786 | lncRNA | downstream | 63102 | 20312400 ~ 20312765 (+) | True | G120254 |
| TU138690 | lncRNA | downstream | 75804 | 20325102 ~ 20326230 (+) | True | G120188 |
| TU138795 | lncRNA | downstream | 91676 | 20340974 ~ 20341290 (+) | True | G120263 |
| TU138800 | lncRNA | downstream | 105440 | 20354738 ~ 20355147 (+) | True | G120268 |
| NM_001124210.1 | mRNA | upstream | 11215 | 20227846 ~ 20232215 (+) | True | cnp-1-2 |
| XM_036990250.1 | mRNA | upstream | 11295 | 20227621 ~ 20232135 (+) | False | cnp-1-2 |
| XM_036990256.1 | mRNA | upstream | 11295 | 20227627 ~ 20232135 (+) | False | cnp-1-2 |
| LOC110534400 | mRNA | upstream | 14823 | 20202143 ~ 20228607 (+) | False | LOC110534400 |
| XR_005039497.1 | mRNA | upstream | 34279 | 20208863 ~ 20209151 (+) | True | LOC118944184 |
| XM_036941236.1 | mRNA | downstream | 991 | 20250289 ~ 20259650 (+) | False | opn9 |
| XM_021623368.2 | mRNA | downstream | 1297 | 20250595 ~ 20259650 (+) | True | opn9 |
| XM_036941250.1 | mRNA | downstream | 10517 | 20259815 ~ 20292954 (+) | False | LOC110537377 |
| XM_036941241.1 | mRNA | downstream | 10517 | 20259815 ~ 20297138 (+) | False | LOC110537377 |
| XM_036941247.1 | mRNA | downstream | 10517 | 20259815 ~ 20297138 (+) | True | LOC110537377 |
| TU138741 | other | upstream | 58805 | 20179408 ~ 20184625 (+) | False | LOC110537348 |
| TU138728 | other | upstream | 72049 | 20171082 ~ 20171381 (+) | True | G120211 |
| TU138669 | other | upstream | 86320 | 20145733 ~ 20157110 (+) | True | zyx |
| TU138600 | other | upstream | 218447 | 20018699 ~ 20024983 (+) | False | casp2 |
| TU138545 | other | upstream | 314953 | 19924072 ~ 19928477 (+) | True | G120059 |
| TU138791 | other | downstream | 70441 | 20319739 ~ 20320256 (+) | True | G120259 |
| TU138671 | other | downstream | 158564 | 20407862 ~ 20419128 (+) | True | G120169 |
| TU139024 | other | downstream | 650976 | 20900274 ~ 20973920 (+) | False | erfl3 |
| TU139026 | other | downstream | 725553 | 20974851 ~ 20976199 (+) | True | erfl3 |
| TU139028 | other | downstream | 742456 | 20991754 ~ 21015891 (+) | True | LOC110509768 |
