RNA id: XM_021581979.2


Basic Information

Item Value
RNA id XM_021581979.2
length 2504
RNA type mRNA
GC content 0.49
exon number 11
gene id LOC110503575
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20438795 ~ 20452556 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttgacgtctgtgcccagtgggaggggttagagggagagagttaaAGTGAAATAGCAAGAAAAGAGAAAGACAGTGAGTGTTTATTTGCTGAGGCAGAAGTGATCACTTCCTCACCATGCTAGGAGTGAGCCTCGGTCTGTTCCTCTTGCCCCTCTGTGCCATGTCGATGCTCTCGGGGTGGGTGGAGTCTCCAAGCTATCCCCGTGGTTACCCACCTGATGCCAGTCTGAACTGGAGCAGGTGTGCCCCTCACGGCCACACCCTCGCCCTCAGGCTGACACACCTGGACATGGAGGACAGTCACGGCTGCGAGAACGACGCCCTGGAGATCTTTGCAGATGGAAAGCAGATAGCCCTTCAATGTGGTGAAATGTCATTTGAGGACCTTGATTCTACCGTCAATCCCTCACTCCTTTCCTCTGTGGaaggctgcctctctctctcgttccgcTCTGATTACTCCAACACCAAGAGACACACTGGCTTCAGAGGGTTCTACATGCTGCAAgACTTTGATGAGTGTGAGGAGGACCCTGATAACGGGTGTACCCAGTTCTGCCACAACTACATTGGAGGATACCTCTGCTCCTGTCGCCTTGGTTACCACCTGGACACAGACGGACACACCTGCACAGTGAGTTGCACTGAGGACCTGTCCGGCTCGCTGCGTGGTGTGATATCCAGTCCCTCTCGGCCCGGCCCATATGCTGAGCATGCCCACTGCTCCtacatcctgtcagtagaggacaACCTGGAGCTGCTTCTACACTTCACTGGGGAGTTTGATGTGGAGCAGGGGCCAGACGGGCAGTGTGTGGACACAATCATGGTTGAGACTTCCTCTGGGACTCAGGGGCCATTCTGTGGCCGTgtgcctccccctcctcccctccgcACTGGGTCACACCACGCCCGCATTCTCTTCAACTCTGACGGACAGGGCTCCAACAATGGCTTCACTATCCACTACAGAACCACAACAAAGACCTGCCGAGGGATTGTGACCTCCAACTCCACCCTGGCCCCACAGCAACCTGAATATCACCAAGGTGACACAGTCACGGTGACCTGTGACCTAGGCAGTGTTCTGAACACAGGTGACAAAGAGTATGAGTCGACATGCCAGAGGACAGGCGAGTGGAGTCCTGTGTACCGCTGTGAACCTGTGGATTGTGGAGAACCAGACACTTCTAGTGATGAGGCCCTTCAACTGGTGGACAAGGATCCAAGCACTCTGTTTCATGATGAGGTCCGGTTCAAGTGTGAATCTAAATACTACACACTGGAGGGAGACGAGAAGTACATCTGTGATGCCAGTGGTACGTGGACATCGGTCAAGGGCCAAGAAAAGTTACCAAAGTGCATCGAAGTGTGTGGGAAGACAGAAACAGATATTTCCAGCTTTGGAAGAATTTTGGGGGGCAAACCGGCGAACATGGGAGAGATACCCTGGCAGCTTCTCACTAAACAGCCCAAAAGAGGAGGAGCATCCCTGATCAATGACCGGTGGGCCATCACAGCAGCTCATGTAGTGGATGGCTACGAAGAAAGCACGCTTACATTTTTCGGGGGGCTGATAGATGGGAAAAAAGCACAAGAAACTGATCCTGATGTGGTTGTCATGGCAACGGAGAAGATTATCATTCACCCTGACTACATAAAGGGCATACCTGGTAATGAACGCACTAACTACGACAGCGATATAGCTCTCATCAGAATGTCTTCCAGGGTGAAGTTAGGGCCCAATGTTCTACCCATATGCCTGCCTGAGGCTGATGGAGGATTCAAAGAGTTTCAGCACGGCACTGTTTCAGGGTGGGGTGGGACTGAGAATAAAGATAAAAGCAGATTCTTGCTTTACGCATCTGTGGGAAGACACCCCCAAATGAATTGTGAGGAAACACCTTTGTTGTCTATTAACAAGCCAATGGTTTTCACTGAGAACATGTTCTGTGCAGGGGGTGATGGGTTAGATAGCTGCAAGGGGGATAGTGGGGGTCCATTATTTCTCCCTAAGCTGGGATCAGGGAACAAGGACAACAGAGGGCCATATCATCTGAGAGGCATTGTGTCCTGGGGTTCCCTTTGTGAACTGGGAAAGGAATCTAAAAAGGGTTACTACACCAAAGTGGAGAATTACTTAGACTGGATCAAGATgacaatagagagagaagagcaggggTAAAAACAGTAAAGAAGACTAAGAAGAGTAAAACATACTAGTCAACTCTGAACCTCCATAATCATAATTGTATGCTAATTATTTCCCGTACTTTTACTTTTTATAAAACCAGTCTGGTTCTATAAATGACTTGTGTTGTTTTAGTTCAGTGTTAAATGTAACTTCAGTATGCAGGCAATACCATCCTGTCATGTCTGAGTAAAATCTCTACTCTGTGGCAAAATCACCAAACATATTGCTGTGCCTTTTATTCATTGTTGTGAATAATGCTTCACAATGTAACCCTGATTGACAAacccaaataaaaatataattcagaAAA

Function

GO: NA

KEGG:

id description
K01331 C1S; complement component 1, s subcomponent

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139911 lncRNA downstream 4416 20428856 ~ 20434379 (-) True G121168
TU139910 lncRNA downstream 4720 20428603 ~ 20434075 (-) True G121167
TU139898 lncRNA downstream 74612 20362223 ~ 20364183 (-) True G121160
TU139891 lncRNA downstream 94065 20344495 ~ 20344730 (-) True G121153
TU139890 lncRNA downstream 118532 20319739 ~ 20320263 (-) True G121152
TU139917 lncRNA upstream 14596 20467152 ~ 20468133 (-) True G121174
TU139918 lncRNA upstream 16455 20469011 ~ 20470007 (-) True G121175
TU139919 lncRNA upstream 17552 20470108 ~ 20471953 (-) True G121176
TU139929 lncRNA upstream 39388 20491944 ~ 20528905 (-) True G121186
TU139935 lncRNA upstream 56830 20509386 ~ 20509940 (-) False G121192
XM_036941302.1 mRNA downstream 17871 20416089 ~ 20420924 (-) True LOC118936525
XM_036941300.1 mRNA downstream 17873 20413499 ~ 20420922 (-) False LOC118936525
XM_036941286.1 mRNA downstream 39302 20391977 ~ 20399493 (-) True LOC110503568
NM_001124554.1 mRNA downstream 61644 20372105 ~ 20377151 (-) True tapbpl
NM_001195275.1 mRNA downstream 81797 20354114 ~ 20356998 (-) True lag-3
XM_036941353.1 mRNA upstream 10133 20462689 ~ 20465854 (-) False LOC110509624
XM_021590328.2 mRNA upstream 13425 20465981 ~ 20501722 (-) False LOC110509434
XM_021590334.2 mRNA upstream 13425 20465981 ~ 20501722 (-) False LOC110509434
XM_021590350.2 mRNA upstream 13425 20465981 ~ 20501722 (-) False LOC110509434
XM_021590357.2 mRNA upstream 13425 20465981 ~ 20501742 (-) False LOC110509434
TU139782 other downstream 226428 20211068 ~ 20212367 (-) True G121046
TU139615 other downstream 510335 19924098 ~ 19928460 (-) True LOC110537275
TU139490 other downstream 743231 19693689 ~ 19695564 (-) True LOC118944062
TU139386 other downstream 950563 19484337 ~ 19488232 (-) False cacng6b
TU139863 other upstream 10126 20462682 ~ 20465789 (-) True LOC110509624
TU139931 other upstream 46340 20498896 ~ 20500587 (-) True G121188
TU139978 other upstream 174001 20626557 ~ 20627700 (-) True G121208
TU140219 other upstream 604042 21056598 ~ 21058849 (-) True G121421
TU140354 other upstream 836060 21288616 ~ 21346687 (-) True G121533

Expression Profile