RNA id: XM_021590343.2


Basic Information

Item Value
RNA id XM_021590343.2
length 2697
RNA type mRNA
GC content 0.48
exon number 17
gene id LOC110509434
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20465981 ~ 20504869 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGTGTAATACGAGCATGACCTTTGTGCATCAAACACAAATGGCACACAAAAGGTTAGatgcacacacttgcacacacacagctgaaagAAGAGAACAAACACTCAGacagaagaggggaggagtggaggacagAGCCACAAAAAGGAAGGAAGGAGCGAGAGAGTGTCACAGAACGACAGAGAGAAAAATCAAAAagaggggagggaagaaggAAGTGAAGGTGAAAATGGTTCGGTGGTTCCACAGGGATATCTCTGGCTTGGATGCTGAGTCTGTTTTGAAGAGCCGGGGCGTCCATGGCAGCTTCCTGGCCCGACCCAGCAGGAAGAACCAgggagacttctctctctctgtcagGGTGGGTGAGCTGGTGACCCACATCCGTATCCAAAACACAGGGGACTTCTACGACCTGTATGGAGGGGAGAAGTTTGCCACGCTGTCCGAGCTGGTGGAGCACTACACTGCAGAGAACGGGATCCTGCAGGACAAAGACGGCACCATCATCGAGCTCAAATACCCCTTCAACTGCTCTGACCCCACCACCGAGAGGTGGTATCATGGACACCTGTCAGGCCCCAACGCAGAGAAGTTGCTATGGGAACGGGACGAGCCGGGCACCTTCCTTGTGCGGGAGTCTCTGTCCAAACCTGGAGActttgttctgtctgttctgaCTGAGGAGAAGAGCAAGGCATCCTGCGGAGGGAGGAGGGTCTCACACATCAAGATCAtgtgccagaaTGACCGGTACACGGTGGGAGGCACAGAGATGTTTGACACCCTGGCTGACCTGATGGAGCACTACAAACGCAAAGGCATCGAGGAGATGTCTGGAACCTGGGTGCACCTCAAACAGccctACTTCTCCACCAGAGTGAATGCAGCAGACATTGACAGCAGAGTGAGGCTGCTGGACCAGATGgccgagagagagaacgagggagacaAGAAGAGCAAAGCAGGATTCTGGGAGGAATTTGATGCCCTTCAAAAGCAGGAGACAAAGGTGAAGAAGAGCAGAGAAGAAGGGATGAGACCAGAAAACAAAAGCAAAAACCGATATAAGAACATCCTTCCCTTTGATGAGACCAGGGTCATTCTGTCATCTGGAGACCCCGATATCATTGGCTCAGATTACATCAATGGCAACTATGTGACAAATAAGCTGCAGGAGCCCAGTGACCAGAAGGTGTACATCGCCTGTCAGGGCTGCCTTGCAACAACTGTCAACGATTTCTGGCAGATGGTGTGGCAGGAGAGGACAAGGGTCATCGTCATGACAACCAGGGAGGTTGAGAAGGGACGGAATAAATGCGTGCCATACTGGCCAGAAATGCAGGGCTCCAAAGAGGTGGGGCCGTATGTGGTCACTTGTGTCTCTGAGAGAGATGCCACTGACTACAAGATCAGGGTTATGGAGATTTCCCCTCTGGATCAGTCGGACTCGGTCCGTACTATCTGGCACTACCAGTACCTGAGCTGGCCCGACCATGGAGTTCCCGAGGAGCCAGGAGGGGTGCTCAGCTTCCTCACTCAGGTCAACACAAAACAGGCCGAGTTCGCCAACGCCGGGCCAATGATCATCCACTGCAGTGCTGGAATAGGCCGAACTGGCACCATTGTGGTGATCGACATGATCATCGAGACCATCGACACGAAAGGTCTGGACTGTGACATAGACATCCAGAAGAGCATCCAGATGGTGAGAGACCAGCGGTCAGGCATGGTGCAGACTGAAGCCCAGTACAAGTTCATCTACCTGGCCGTCTCTGAGTACATAGAGGCCTCCAAGACCTACAACaagGGAGCTGAGACAGAGTATGGAAATTTGCAGTTCAAACACCAGCCTGCCAGCCGCAAGGTCTCCAAAAACAAGGAACAGGAATTGTATGAAAACCTAGCCAAAGGAAAGAAAGATGTGAAGAAGCAGAAGTCAGAGGAGAAGAAGAGTGGCTCTGTGAGAAAaagatagaggatgagagagctgTGTCCTGATGATTTAATATTGAATttgatattacatttttattttaaaagatTTATCTTAGTGTTTTTTGATATCAAGTGATAAAGTTGATGTCTGTGATATAATTAAGATTATAAAGCAAAGTACTGATAGCCGTGAACCATGGAACCATTCTGCACCTATGCAAATGGTAATGGATTTAAATGTTTGCTGACAATAAAAGCTCAGAGTAATAAGCATTCATTTCTTTCTTCATCACAAGTGTATTGTATCCATGGATGCAAAGCCTATAGAATATTCTGCAATTAATATAATAAAATGCCATGACCACGGGATCTAGCACAGCGGGGACACACAGCCACTCTGTCATTCCAATGAAAGTTTTGGATAAGACATATCTCTATAATGAGCTATTATGTTTATAGACTAACATTGGAAACATCACTGGGCTCCCCCAGAGTCGCCGACGACCCCAAGTGGCTGCCCGGAGTGAGATGAAAACTTTGAGCGAGATGAATGAACTTTTCCCCGCCTCCCTCTTTTCCGTATGTGGTACAGAACACAGTCTGCTCTCCAAACAGCGATAGTGAAGGAGAGCGAGAAAAACTTTGAACActtttgtgtgtgtaatgtttactgttaatttctgattgcttatttcacttttgttgaaTGTTTTTCACGTTTTGGCAATGTAAGCATatgtcccatgccaataaagcaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139911 lncRNA downstream 31602 20428856 ~ 20434379 (-) True G121168
TU139910 lncRNA downstream 31906 20428603 ~ 20434075 (-) True G121167
TU139898 lncRNA downstream 101798 20362223 ~ 20364183 (-) True G121160
TU139891 lncRNA downstream 121251 20344495 ~ 20344730 (-) True G121153
TU139890 lncRNA downstream 145718 20319739 ~ 20320263 (-) True G121152
TU139935 lncRNA upstream 7621 20509386 ~ 20509940 (-) False G121192
TU139936 lncRNA upstream 7621 20509386 ~ 20510757 (-) True G121192
TU139948 lncRNA upstream 31102 20532867 ~ 20539796 (-) False G121197
TU139950 lncRNA upstream 31102 20532867 ~ 20540960 (-) False G121197
TU139943 lncRNA upstream 33235 20535000 ~ 20542119 (-) False G121197
XM_036941353.1 mRNA downstream 127 20462689 ~ 20465854 (-) False LOC110509624
XM_021581979.2 mRNA downstream 13425 20438795 ~ 20452556 (-) True LOC110503575
XM_036941302.1 mRNA downstream 45057 20416089 ~ 20420924 (-) True LOC118936525
XM_036941300.1 mRNA downstream 45059 20413499 ~ 20420922 (-) False LOC118936525
XM_036941286.1 mRNA downstream 66488 20391977 ~ 20399493 (-) True LOC110503568
XM_036941363.1 mRNA upstream 4458 20506223 ~ 20582957 (-) False LOC110537414
XM_036941374.1 mRNA upstream 4458 20506223 ~ 20582957 (-) False LOC110537414
XM_036941379.1 mRNA upstream 4458 20506223 ~ 20582957 (-) False LOC110537414
XM_036941383.1 mRNA upstream 4458 20506223 ~ 20582957 (-) False LOC110537414
XM_036941386.1 mRNA upstream 4458 20506223 ~ 20582957 (-) True LOC110537414
TU139863 other downstream 192 20462682 ~ 20465789 (-) True LOC110509624
TU139782 other downstream 253614 20211068 ~ 20212367 (-) True G121046
TU139615 other downstream 537521 19924098 ~ 19928460 (-) True LOC110537275
TU139490 other downstream 770417 19693689 ~ 19695564 (-) True LOC118944062
TU139389 other downstream 977749 19485649 ~ 19488232 (-) False cacng6b
TU139978 other upstream 124792 20626557 ~ 20627700 (-) True G121208
TU140219 other upstream 554833 21056598 ~ 21058849 (-) True G121421
TU140354 other upstream 786851 21288616 ~ 21346687 (-) True G121533
TU140595 other upstream 960928 21462693 ~ 21463030 (-) True G121738
TU140631 other upstream 988502 21490267 ~ 21547037 (-) False G121756

Expression Profile