RNA id: XM_036941363.1


Basic Information

Item Value
RNA id XM_036941363.1
length 7443
RNA type mRNA
GC content 0.53
exon number 41
gene id LOC110537414
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20506223 ~ 20582957 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGATTATTCTGGGATGTCTGCCccctttgtgtgtttgtgaggaTGTTAGCTAAGCTCTGCTAGCCACTGAggctgggggagagaagggggacgGAGTGTGCAACGTGTTTTACGGGGTCATTAACGACATATTTTACTGGATATTGTTGCTCATTAATTTATATTAAAGACTAATACCATTGCTGAGAGACAATTATTACACGAAGGAAACCCAAATCTAACAGGGACTACACGACCCCCCTCCCCAGGACACCCCCGTTCCATTCTCCACCACCCACACGTCATTTGCCCTCCTCCCTCACCAGATCGGACCGGGTTCGGTGGAGGGATTAGCTCGCTTTTAATTTAAATTCATTATTATTGAAATATGTCGGGAAGCGAGGACGAGAGGGAAGACTTGGAACCTACAGGACTTGCACATGATGAGGGGGAACCAGAAGACGCTGTGTCTGACGTCGAGGTCCCCACCAagtcaaagaagaagaagaaagccAAGAAGAGCCGTGAGAGCAGGATCAGCAAGAGACCAAGACCTGTCAGAGAGGAGGTGCCAGTCAGCTCACCAGAACCCTTCATAGCAGTAGAGCAAGCAgcgagggaggaggaagagggaggaggaggtagagccAGGTCAGAAAGCGAGGGAAGTGATTACGCCCCGAGGGGGAAGAAGAAGAAGCGCTCCAGCTCCTCCAAAGACAAGAAGAAGGGAGGGACgagtggagagaaggagaaaggaggaggaggctcATCCAGCTCCAAGAGTAAACGCAAAGAACCAGAACTAGAGAaagatgaggatgatgaggaggatgatgatgaagatagCCAGGAGCCCAAGAGCTCGACTCAGCTGCTGGAGGACTGGGGCATGAAAGACATCGACCATGTCTTCACTCAGAAGGActacaccaccatcaccaacTACAAGGCCTTCAGCCAGTTTGTCAGACCCCTCATCGCAGCCAAGAACCCCAAGATCGCTGTGTCCAGGATGATGACTCTGATGATGGCCAAGTGGAGGGAGTTCAGCACCAACAACCCTCTGAAGGGCTGTGCCAGTGCCAACGCAGCCCTGGCAGCTGCCAACGTGGCTGCGGCCGTggaaagcatggtggtggcagggaCAGAGGCAGGAGGGGATACAGGGGCGGGGGGTAGTGCCGCGAAAGAGTCCCCTCCAGCTGCACTCGCTTCCGTACCTGTAGCTGTGCCCGCTGTGCCTGCACCCCCACTCCGcaaggccaagaccaaagaggGCAAAGGCCCCAATGCTCGCAGGAGGTCCAAGCCCAACCCTAAGGCTGCCCCCAAGCCCAAAGCCAAGAAGGTGGCTCCGCTCAAGATCAAACTGGGAGGCTTCAGCAGCAAGAGGAAGAGATCCTCGAGTGAGGAGGATGAGCTTGACGTGGAGAGTGACTTTGACGACGGGACCTTTGAAGTGTCGGACGGCTCCAACAGCCACAGCAGCCGCTCCAAGAAGAAGGCCAAGACcgccaagaagaagaagaaagTTGAGGAGGATGGTGACGGCTATGAGACAGACCACCAGGACTACTGTGAGGTGTGCCAGCAGGGAGGGGAGATCATCCTGTGTGACACCTGTCCCAGGGCCTACCACATGGTCTGTCTTGACCCCGACATGGAGAAGGCCCCCGAGGGCAAGTGGAGCTGCCCCCACTGTGAGAAGGAGGGGATCCAGTGGGAGGCCAGAGAGGAGCTgtctgagggagagggggaggatgaggaggtagggagggatgagggatgggtagaggaggaggatgaccaTCACATAGAGTTCTGCAGGGTGTGTAAGGATGGAGGAGAGCTGCTGTGCTGTGACACCTGTACCTCCTCCTACCACATCCACTGTCTCAACCCCCCCCTCCCCGAGATACCCAACGGGGAATGGATCTGCCCACGCTGCATGTGCCCGGGCATGAAAGGTAAAGTCCAGAAGGTTCTGACCTGGAAGTGGGGTGAACCTCCTTCCCCTACACCTGTGCCCCGCCCCCTGGACCTCCCAGCCGAGGCCCCAGACCCTGTCCCATTGGCCGGCCGACCAGAGAGGCAGTTCTTTGTCAAATGGTGCAACATGTCTTACTGGCACTGCTCCTGGGTTCAAGAGCTACAGttGGAGCTGAACTGCCAGGTGATGTTCCGTAACtaccagaggaagacagacatgGACGAGCCCCCGCTGGTGGACTTCGGAGGGGAGGGGGACGATGACAAGAGCACTAAGAGGAAGAACAAGGACCCCCTGTATGTTCACATGGAGGAGGAGTTCTACCGTTACGGAGTCAAGATGGAGTGGCTCATGATCCACCGCATCCTCAACCACAGtgtggaTAAGAGGAACAACGTGCACTACCTGATCAAGTGGAGGGATCTGGCCTACGACCAGGCCTCCTGGGAGAGTGAGGAGATGGACATCCCAGAGTATGACCAATACAAGCAGACCTACTGGAACCACAGagagttGATGTTGGGAGATGAGGGCAGGCCTGGTAAGAAGCTGAAGAAGATAGCTAAAGTGAAGAAGAGTGAGAAACCCCCTGCTAACCCTGTGGTGGATCCCACCATCAAGTTTGACCATCAGCCAGACTACCTGGACACTACAGGGGGAACGCTGCACCCCTACCAGCTGGAGGGTCTCAACTGGCTGCGTTTCTCCTGGGCTCAGGCCACTGACACTATACTGGCTGATGAGATGGGTCTAGGCAAGACTGTCCAGACCGCTGTCTTCCTCTACTCACTCTACAAAGAGGGTCATTCAAAGGGCCCGTTCCTGGTGAGCGCCCCCCTGTCCACCATCATTAACTgggagagagagtttgagttGTGGGCCCCGGACATGTACGTGGTGACCTACGTAGGAGACAAGGACAGCAGAGCCGTCATCAGAGAAAACGAGTTCTCCTTCGAGGGCAATGCCATCCGGGGGGGCAAGAAGGCCTCTAAGATGAGGAAAGACTCATCGGTGAAGTTCCATGTCCTGCTGACGTCCTATGAGCTGATCACTATAGACCAGGCTGTGCTGGGCTCCATAGACTGGGCCTGTCTGGTGGTGGATGAGGCACACAGGCTGAAGAACAACCAGTCAAAGTTCTTTAGGATTCTGAATAACTACCCTCTCCAGCACAAGCTGCTGCTGACTGGTACACCTCTACAGAACAACCTGGAGGAACTCTTCCACCTGCTCAACTTCCTCACCCCAGTGAGATTCAATAACCTAGAGGGGTTCCTGGAAGAGTTTGCTGACATCGCCAAAGAAGACCAGATCAAGAAGTTGCATGACATGCTGGGACCACACATGCTCAGGAGACTGAAGGCCGACGTCTTCAAACACATGCCCTCCAAGACAGAGCTCATCCTACGAGTGGAGCTCAGCCCCATGCAGAAGAAGTACTACAAGTTCATCTTGACGCGTAACTTTGACGCCCTGAACACCCGCGGAGGAGGAAACCAAGTGTCCCTGCTCAACGTGGTCATGGACCTCAAGAAGTGTTGCAACCACCCCTACCTCTTTCCCGGAGCCGCAATGGAGGCGCCAAAGATTCCAAACGGAATGTACGAGGGCAGTGCTCTCACAAGGGCTTCTGGGAAACTGACTCTGCTGCAAAAGATGATGGTTAAACTCAAGGAGGGAGGACATAGGGTGCTCGTCTTctctcagATGACTAAGATGTTGGACCTGCTGGAGGACTTCCTGGAGAACGAGGGTTATAAGTACGAGAGGATTGATGGAGGTGTAACGGGGGGCATGAGACAGGAGGCCATCGACCGCTTCaacgctcctGGCGCCCCTCAGTTTGCCTTCCTGCTCTCTACCAGAGCGGGAGGTTTGGGCATCAATCTGGCAACCGCCGATACCGTCGTCATCTACGACTCCGACTGGAACCCCCACAATGAcatccaggcATTCAGCAGAGCTCACAGGATTGGTCAGAATAAGAAGGTTATGATCTATCGCTTCGTTACCAAGGCGTCTGTGGAAGAGCGGATCACTCAGgtggCTAAGAAGAAGATGATGTTGACCCACCTGGTGGTGCGTCCTGGGCTGGGCAGTAAGACAGGTTCCATGTCTAAACAGGAGCTGGATGACATCCTCAAGTTTGGAACAGAGGAGCTGTTCAAGGACGAGCTGGGAGAGGGGGACAACAAGGAGGATGACAGCCAGGTCATCCATTATGATGACAAGGCCATAGACAGACTGCTGGACAGGAACCAGGAGTCAGAGTCCACTGAGGACACAGAGATCCAGAGCATGAACGAGTACCTCAGCTCCTTCAAAGTGGCCCAATACGTCGTcaaggacgaggaggaggaggaggaggaggtgcagcgtgaggtgaTTAAACAGGAGGAGTCAGTAGACCCAGACTACTGGGAGAAACTGCTGAGACACCACTatgagcagcagcaggaggaccTGGCCCGTAACctgggaaagggaaagaggaCCCGCAAGCCTGTGAACTACAACGACGGCTCTCAGGAGGAACGAGGTAGTAGACGGGATTGGCAGGAGGATCAGTCTGACAACAACTCAGATTACTCTGTGGCctcagaggagggagatgaggactTTGATGAGCGATCAGAAGCCAACACCCGCAGGCCAAGCCGCAAGGGGCTGAGGAACGAAAGGGACAAACCACTGCCCCCCCTGTTGGCCAGAGTGGGAGGCAACATTGAGgtgttggGCTTCAATGCGCGCCAGAGAAAGGCTTTCCTGAATGCAGTGATGCGCTATGGGATGCCTCCTCAAGATGCCTTCACCACCCAGTGGCTGGTCAGGGACCTCAGGGGGAAGTCTGAGAAAGAGTTCAAggcGTATGTCTCCCTCTTCATGCGTCATCTCTGTGAGCCGGGGGCTGACGGAGCGGAGACCTTCGCTGACGGGGTTCCACGGGAGGGGTTGTCACGACAACATGTCCTTACACGCATCGGCGTGATGTCATTGATCAGGAAGAAAGTGCAGGAGTTTGAGCATGTGAACGGCCAGTGGTCCATGCCCTGGATGATGGAgctggaggagaacaggaggctGGCAGCCATCGCTGCTGGAGAGGATGTCAAGACACCTTCTACTGGAACCCCCGCTGACACACAGCCCAACACCCCtgccccagAGGACCTCACTAAGTCTGAAGACACTGGCAAGGAGACAGAGgtaaagaaggagggagaggcagaaaaGGACGGCAGGGTGCACAGCAAGACAGAAGACCCAGAGATTATTGAAATCCCAGACGAGATGGAAAAACGCTCTGAAAGgaaagaggcagagggagagtccTCCACCACAGAGAACGACAAAGAAAAGAACAAAGACACAGAAGAGAAGGACGATAAAGAGACTGAAGAGAAGGAAACCAAGGAAACCCAAAAGGAGACGGCAGACAAGGAGAAGGATTCCCCCACTGAGGTCAAAGGTGAAGGGTCAGAGGCCACAGCAATGTCAGAGGAGGCCAAGCCTAAAGTGGAGGAGAGCAAAGAGGAGAAGATGGACACCAGTCCTCTTGCAGAGGACAAGAAAGAGCAAAAAGAGGAGAAAGATGGTTTGAAGACCGAGGAGTCTGGCAAGCTGCAGAATGGAGAGAACAGTAAAGAAGGAGTGGCAGCAGCAGGGATGGCGGTGAATGTGagtgaggagaagaagaaggctACCAAGCAGAGGTTCATGTTCAACATCGCAGACGGAGGattcacagagctcCACTCTCTGTGGCAGAACGAGGAGAGGGCGGCGACCGTAACCAAGAAGACATTTGAGATCTGGCATCGTCGCCATGACTACTGGCTGCTGGCTGGCATCATACAACACGGCTACGCTCGCTGGCAGGACGTGCAGAGCGACGTGAAATATGCAATCCTCAACGAGCCCTTCAAGGGGGAGATGAGCCGAGGAAACTTCCTGGAGATCAAGAACAAGTTCCTGGCCAGGAGGTTTAAGTTGTTGGAGCAGGCGTTGGTGATTGAGGAGCAGCTTCGCAGGGCAGCCTACCTGAACATGTCTGAGGACCCGGCCCACCCCTCCATGGCCCTCAACACCCGCTTCAGTGAGGTGGAGTGTCTGGCTGAGTCCCACCAACACCTCAGCAAGGAGTCCATGTCAGGGAACAAGCCTGCTAACGCAGTACTGCACAAAGttcTCAAACAGCTTGAGGAGCTTCTGAGTGACATGAAGGCCGACGTCACCCGTCTCCCGGCAACCATCGCCCGTATACCTCCCGTCGCCGTGAGGCTGCAGATGTCGGAGAGGAACATCCTCAGCCGATTGGCCAGCCGCGGGTCCGACGTCACAGGGCAGAGCCAATCACAGACCACGCAGCAGATGCAGGTGCCACGCTGACCAATTCCGCCAGTCCTCCTCAAGGCATTCTCCCATCCGTGTTTTGGAATTGGAGAGTGACCCTTATCTCACCCCGCTCTGCACCTCTCTTGTCCCCAAACCAAATCTCACACTCTGGACAGTAGAGTAAGGTCTCTACCCACCAACACATCTTCTCTGGACACAGCAGACTACAAATGTTCTGCTTCCTCTTCACCCAAAGACACCTGTAGGAACACAGTCTCTGTTCTCCACTGAGAACACCTtctctacagtatctacctaatGAACTGCagcactgtctctgtgtctgtctgttatgtGTCTAACTTTCACACAGAGGTTGTTTTCACTGTATCTTTCCCCAAGCCTGTCTCTAAAATAGACAGAGGTGTACCTGGCTCTGTCCCATAGAATTAGAATGGGTCAAATGGACTTTTCCACTCCAAGTAAAGGTTCTATAATATGTGGACTCGTTGTTCTATGGGTGTGCAGAATTAAATTTGATATGCAACATGTACAATTCAATTCAGTAAAAATGAAATCATGTGGAATTTAGAACTATGTCTGTTCTGCCCATTCCATTTCTGGGTGTGTACCTCttctgagtgtatgtgtgtgtgtctgtgtgtgtaggtgggtaCACTGCTCTATACTTCCCACAGAGAGACTGTTAGTAACTATCAACTGATGAGGATGCTTTAGTAGAATAATATTGGTTCTGTGTTACActcctgcccctccccctcttcacTGCTCCCTTCACCTGTAAACTCAGGTGGTCCATAACACTAGCCTGTTATTGGCTCTCCCCACTCCTCGGCAACGCCCCGTCCAGCAGCTCTACATTCCTGAACGATTGCATCACAAATGTTCCCGGAGGCCTCGCCCCCTTTTTGCCCAAATAAGGACATGCAATAGCTCCACTAGTGTAGACACACGGGCCGCATTGAGAATGATGGCAATCTCTAAATTAATTAAATGTCTTAGTCTAATGTTTGGTTCTTTTACATTTTGGAATATTATTATGGTTACCAGCTTGTTGTTTTTATCGTTACAGTTTCTTCTGAGAACTCCAATAAAAAGGGTAACAGTTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139919 lncRNA downstream 34270 20470108 ~ 20471953 (-) True G121176
TU139918 lncRNA downstream 36216 20469011 ~ 20470007 (-) True G121175
TU139917 lncRNA downstream 38090 20467152 ~ 20468133 (-) True G121174
TU139911 lncRNA downstream 71844 20428856 ~ 20434379 (-) True G121168
TU139910 lncRNA downstream 72148 20428603 ~ 20434075 (-) True G121167
TU139992 lncRNA upstream 2791 20585748 ~ 20628481 (-) True G121219
TU140011 lncRNA upstream 58798 20641755 ~ 20643822 (-) True G121238
TU140013 lncRNA upstream 70042 20652999 ~ 20653565 (-) True LOC110537462
TU139979 lncRNA upstream 111412 20694369 ~ 20695390 (-) True G121209
TU140067 lncRNA upstream 214437 20797394 ~ 20798054 (-) True G121286
XM_036941330.1 mRNA downstream 1354 20465981 ~ 20504869 (-) True LOC110509434
XM_021590389.2 mRNA downstream 1355 20465981 ~ 20504868 (-) False LOC110509434
XM_036941326.1 mRNA downstream 1355 20465981 ~ 20504868 (-) False LOC110509434
XM_036941336.1 mRNA downstream 1355 20465981 ~ 20504868 (-) False LOC110509434
XM_021590337.2 mRNA downstream 4458 20465981 ~ 20501765 (-) False LOC110509434
XM_036941394.1 mRNA upstream 14099 20597056 ~ 20602276 (-) False LOC110537423
XM_021623455.2 mRNA upstream 14099 20597056 ~ 20602488 (-) True LOC110537423
XM_036941433.1 mRNA upstream 68277 20651234 ~ 20654961 (-) False LOC110537462
XR_002475629.2 mRNA upstream 68277 20651234 ~ 20660987 (-) False LOC110537462
XM_036941430.1 mRNA upstream 70947 20653904 ~ 20654963 (-) False LOC110537462
TU139931 other downstream 5636 20498896 ~ 20500587 (-) True G121188
TU139863 other downstream 40434 20462682 ~ 20465789 (-) True LOC110509624
TU139782 other downstream 293856 20211068 ~ 20212367 (-) True G121046
TU139615 other downstream 577763 19924098 ~ 19928460 (-) True LOC110537275
TU139490 other downstream 810659 19693689 ~ 19695564 (-) True LOC118944062
TU139978 other upstream 43600 20626557 ~ 20627700 (-) True G121208
TU140219 other upstream 473641 21056598 ~ 21058849 (-) True G121421
TU140354 other upstream 705659 21288616 ~ 21346687 (-) True G121533
TU140595 other upstream 879736 21462693 ~ 21463030 (-) True G121738
TU140631 other upstream 907310 21490267 ~ 21547037 (-) False G121756

Expression Profile