RNA id: XM_036941407.1


Basic Information

Item Value
RNA id XM_036941407.1
length 6294
RNA type mRNA
GC content 0.57
exon number 10
gene id LOC110537453
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20629126 ~ 20649273 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGAGAAGAAAAAATGAAAGGGGAGAGTAGGGAGGTGGTTTGCAGAACCGCTTGACTGGACACACTGTAGCTAGCTCCCCCGACACTGTgcagagtaaaagagagaggtagacggagagagagaggtggaaggagaagaAACGGGGTAGGCCTCGGCCTAGGTTTTAGGGGAAAGGGTTATACACCCAAAGAAGAACTCCGTTCTAGGCATGAATAGAATGGATACAAAACTTTGAGAATGCACTATTATCTAGGCTATAACGGCATTATTCAGTTCGATGCTGTTTGACTACACGTTGGGCTGCATGCTGTAGCCATGTGCCCATCAATACAATGATGGGGAGAAGTTATAGAACAAAGGGAGAGAAGGTTGTAGAAGCTCAGATGGTGGTGAGGTGATTTTCAGTCCTACAGAGAAAGACAAGGACACCACTTCATTCACTGCTATGGCCTGTGGGGAGGGATGGACATCATAAAGGAGTAACGATGAAAACTCGAACTCACAAAGAATCGATGCCAATGCGCAGTGGGCGGAGGCGGGGGGGAAGCAacgaggagaggaggggtagacGCCCGCATCCCAGCCCTTCTCGTGCAGAACGAAACGACAGGCAGACGcaaagagctgctggcgaGGAATTGGCTCGCTTCAATCACAGATCGCAAGGCCATGATTCGTCAGAGAGTGAAGGGGAGGAACTTGTGCCTCCACCAAAGAGGCAGAAAGTCCAGGATTCTTCCTCTGTCACCAACCCACCGACTTCAACTCATTCAACTGACAGTACTCCCCCCACTATACCGCCCCCACCCTCGGCTCCCAGACAGTCACGTGACAGTGACAACGAGGATGGTCAATCCCAGGGCAGCAGGAGCTCAGTTGTAGGGAGCTTGGCCAATAGTCTGAGCAGTGGGCGGGACATCGACCAGGACAATCGATCTTCCTCCCCGAGTCTCTCTGCCTCGCCTCCAGCCAGTTTAGACTCTGACTCTGATGGTCCAGACTCACCAAAGCAAGGAGAGGGGGAACgggagaaaaggaaagagggaggagtggggaagacaggaggagaggaaaggagagcagccagagaggggagaggggatgagtCTTGCGGGGATGGAGAAAGGAAGGatggaggaatagaggacagCCCTTCTCTGAAGCTGCCATCCTCCTCCATATCTTCCTCTgctcctgttccctctctccgcGGAGCAGGGGATTCAGCCAATGACAGCAATAGTGGCAGGAAGTCCTATTTCTCACAGGACTCCAAGCTGGTAAGCAAGATGGAGTATGGACCGGCCAGCGCTGACACTGTGCACAGTGGCAATCGAATGAACTCCAAAGCTAAAGCTCAGTGCGTGACCAAGGCAACTGTCGCCGGGGGAGACTATCCCCTCGGCAACCCCAACATTCCAcacccccctccaccaccccttcctcctccaccagcGCTGAAACCCTTAGAACTAGGGGGGCAGAACCTGCCCTCAGAAgtcaaggtagagagagagaaaatggagaaAGGTGAGAAACTGATGGACAACAAGAcggctcctccctctctgttacccCAAACCAGCCCCTTACCCCCCTCCCAGCCCCCgccccacccccaccactacagtcCCACTGGCTGGCAGGGAGGCACCGCAACCGGTTGCCAGGGGAGCTGGGGCTACACCCGTTACTCTGGTAACCACCACACTCACCAGCCGCAGCACCAACCCCCAGTGCAGCAGCAGCAACTGCCATCCGTCTACAACCCCCCTTCCTCCCGTCATTCGTCCTCCTCCCACCCCCCTTACCTCCCCCACCCCCACAAGGAGTACCTCCCCAGGTACGCTTCcgggggaggggaaagggagaggggggtggccggcgagagggagagggggggagtgagggTGGAGTATGGGGGGAGGGAGATAGGTAGGGATTTCTCGGctggtagtggtagtaacagcAGCACTTCTGGTGGGATGGGGGGTCCTAATGGGGTCCAAGGGAGGGAGTTTGGGGGTCAGAACCGGGAGTACCCAGGCCTGGGACCTCAGGGCTCTGGGAGAGACCCCCCAATGGGTCCTGGGGGAAGAGAATTTGGACCGGGGGggttcagagaaagagagagggatagagatagagatagagagagggagggagagagggatgtaggagGAAGGGAGTTTCCTTTACAGAATCGTAATGAGAATCAGAACAGAGAGTTTGGACCCACCGGTGCTGGGGGAGGAAGGGGGCACCCCAGAGACAAAGAGGGGGGGCGGTGGGGCGAGTTTGGGGGCCAGATGAGAGAGGTGGGGGGCAATAGTAACCCCAATAATAACCCCCTACCACTAGGAAACCCCCCAAGCTCAACCAGTGGGTTACCTGCAGCCCCCATGCTAAACCGCGATCCCCCTTCCTCACCCCAAAACAACCCCAgccaccctaccctacccccccACCCACATCCTCAAAGCGCCACCAAACGAGACTACCCCCCATCGATGGACCAGGGACAGACAAGGCACAGTTCCCCCTCTGGACCAGAACACTTCCACAGAGAGTACCCTCCTGGGGCCAAGGACTATCCCCCTGGTGGCCCCCCCTCCACCGGCCCGGCCCGTGAGTACCCCAGTCCTCCCGGAATGACTCCAAACCTGGGCCGAGACTACCCAGGTGGACCTCAGATCCCCCACCTGCCCCACCCCCACTTTCCAGCCCAGCAGCCCAGAGACAGGGACCGAGAGAGGGACACCAACCAGCGAGAGTCGTCTCTGTACCAAAACCGTGGCGGTCCCCCccaacccccttccctttctccctcctcttcctcctccactcctcatgGACACCCTACGAATGCTCCTTACCCTCCTCcgccacctcctccccctctccccactccCCAAACCTCCCTCGCTCAGCCCCAACCCCCCTCCGGCCTGGGACCCAATCACGTTCGTCCGGCAAATTACCCTTCCTCCAATCAGACTCCTGCAACACCCCTCTCTCCTTTACTAAGCCCCTCCACCAATCAGATGGGAGGGTTTCCTTCCTACCCGCCAGGCTCCTCCTCCGGGGCCAACATGTCACTTCCTGGTTCAGGTGTGTCACCTGGCTGTCGGCCCTCACCTTTTCACAGCACTTTGAACAGCCACGCCCCCTTCAGCAGCCCCTACCACTCCAATGGGAACAGTGGGAACAACCTGGTCCTGACTAACAGCaatagtaacagtagcagtggcagcagccataccaactctctctctcagtccctctcacCTCAAAACGCCTCAAAAGGACCCCCACCTCTTAGTAACCCCGGCAACAACAATGGCACTTCGGCCCCTGGCTGTAGCTCCTCACTTCCTAGAGATGGGCATTCTGATTCGTCCACAGGTCCACCTCCCCCACCTGTCATCAAGGAGGAACCaatagaagagagggaggagagtgaaagCCCACCTCCTGTTTTAAGAAGCCCCTCCCCTGAGCCCAAGCCGGTGGACATTCCGATCCACGCCAGCCAATCAGCACGGTTCCACAGGGTTCTAGATCGGGGCAGTGGAAACTCCTGCGCCCGCAGCGACGTTCTCTTTGTCCCCCTGGACGGCTCCAAACTGTGGAAGAAGAGGAACGAGGTGATCGAGAGAGCCCGGAGAGAGGTGGAGCAGAGGGCCAGAGACCTGAGGGAGAAAGAGcgggaacgagagagggagagagagagggagcgggaccTGGAGAGGCATCTACAACAACAGAAGGACAATAACAATGGAAATATACAACGCCAGggatcctctctcttcttcccctcctcctccatcctcctcgaCCCTAACTCCTCTTCTTCTAACCCTGGGTCTCACCCTCAACCTCACCCCCAGCAGCACCACTCCCACCCTCACCCCCACGCTCACCTCCACCACTcccacctccacccctccctctctcaacacATCCCACACTCCCTCCTCATGCAGTCAATGGGGGGTTCAACGGTGGTTGGCCCACAGGGGGCTCTGGGGATCGGGTTAGGAGGGCCGTACCTGGGCCCTGACACCCCCGCACTGCGGACCCTGAGCGAGTACGCCCGGCCCCACGCCATGTCCCCCCTCGGGGCTAGTCGCCAACACCAACACCCACATGTCCACCATCATGGCCACCCTCATGGCCACCCCCATgtccacccctccttcttcctcccCCAGTTCCAGAACCATGCTCTGGCCCACCCACATCACATGCCTGCTGATGCAGCCACAGCGGCAGCCATCTTGGGTTTCCTCTATGGGGGCAGTATGGAGGGAGGGCCAGGGGGGCATGGAGGAGGACATGGGGGGATGGGGGGTGCAGGGTTAGGGGGGATGGGGTTTCCCCATGCAGTGGCAGCCCACCGTGAGCGCATGAAGCCGGGGTTTGAGTTTAAGAGTGAGGACAGGGTGTACCAGCCGGGCTCCTTGGGAGATCCTACGGCTCTCGCCCTCGCCCACTCCCACTCGCATGCCCACGCACACGCTCATGCACATGCTCACTCCCTACtgctggggggagggggtggaggtgagGTGTCCATTTACGGCACCCCCCCTCCCCAGgctcctccacccccaccaccGCCCCTCCAGAACCCAGCGTTAGCCCCAGTGAGTCGCCTCCCTAACCCTCCTCCCGCCCCTCAgtccctctccaaccctccccccttctccctgcTTCATCCCTCGCTCCCCTCTCACCCTGCACCTGCACCAGCCCCTCCACCCCCAGCCCCTGCAGCTGCACCTCTGCctgctcctcctccaccctcctccaaccctgtttcatccctccatcacccCGCACCGCACTCCTTTCCCagctccctccccccatctcacCCTCCACCTGCCCCTGCCCCGGTGACCGCCCCTCCTGAGACCTACCCCCCTCCCACTCGCTCCCCCAccacctctgagagagagaggagtggagagagggagagagaaagagagcgagacagagcgggGCTGCCAGCCggtggagagaggggacgagagagggagcgagagagagagagagaaagagaaagagaaagaggggaaagcaATGGAAGTGGAGGAAGTGgtggaagtggaggaggaggaacaggaggaggagagattcCGGGGCGTCTTCAGATGTTGAACGTCACGCCTCATCATCACCAGCACTCACACATCCACTCTCACCTGCACCTGCACCAGCAAGACACAGCGGCGGGCGGGGTGCACCCCCTGATGGACCCGTTGGCATCGGGGTCTCCCCTGGCCCGCCTGCCCTACCCAGGAGCAGCGCTGGGCACCCCCATCCTGGCACACCCCCTCACTGAAAGCGAGGTGCTACGACAACAACTCTTCGGCGCTCCGTTCCGTGAGCtgccccagccctcctctctgacAGGTTCCATGTCAGCGGCCCACCAGCTCCAGGCCATGCAGCAGGCCCAGAGCGCAGAGCTGCAGATCCAGAGACTGGCCCTGGAACAGCAGTggatccaccaccaccaccaccactccctcACCCAGGACGAGTACTACAGCCACTTAAAGAAGGAAAGCGACAAGACCCTGTaagggaggaaacagagagggggaacaAGCCCACGGAAGACAAAGAAATATCTGCAAAGGAAGAAGAAAACACCAAAACAGAAGCACTAAGAACATTGAAGGAAGCATCAAACCATAGGAACCTGAGGAGAAATGAACTGATTGGGAAACCAGATGacaaaagggagagagggatgagaggagtgaAAACGTTGCTCACAGTCTGTGTTGTCTGTACTATACCATAGCCCCAGACTCTGGGCGCATCACAGCGTATGTTGTTCAACTCCAGTTTTGTATTGTGCCCTGTACAGTATGCTAGGTGGGAGCAGCAATATAATGCAGTACAGTCTGGTGTAAATGACCTTATGCCAGGAAGAATGTGTACATGAGGCTCTCTTTTATGTCATTGCATGTAGCTAGGCGCTTATTCTGAACTGGTTGAACTCCTGGTTGTATTTTTAGAGATCGCCCTCTCTTTCCTAACGAACGGGTGGTGTATGAGTATGCATGAGACCAGCGATTAACAAGTGTCATATTATGTTAACGATTAatagtattgttattattattgtctgTTTGTTGATAATTCTATATACATATTAtttgtattgttattttattacattttcatgGTATGGCGGTTTCTttaattttttattgtgaaacgaGATGCAAATGAAGGAAAAAGATAAACTACATCATTTTTTGGGGAAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138910 lncRNA upstream 32258 20595713 ~ 20596873 (+) True wnt4b
TU138904 lncRNA upstream 46161 20582204 ~ 20582970 (+) True G120346
TU138900 lncRNA upstream 49370 20579295 ~ 20579761 (+) True G120342
TU138866 lncRNA upstream 87019 20536603 ~ 20542112 (+) True G120317
TU138870 lncRNA upstream 88829 20538714 ~ 20540302 (+) True G120318
TU138932 lncRNA downstream 33054 20682327 ~ 20695427 (+) True LOC110537492
TU138986 lncRNA downstream 86467 20735740 ~ 20736339 (+) True G120402
TU139002 lncRNA downstream 110085 20759358 ~ 20759746 (+) True G120418
TU139009 lncRNA downstream 141972 20791245 ~ 20796296 (+) True G120425
TU139035 lncRNA downstream 182226 20831499 ~ 20838492 (+) True G120450
XM_036941413.1 mRNA upstream 649 20615636 ~ 20628482 (+) False LOC110537439
XM_036941418.1 mRNA upstream 649 20615753 ~ 20628482 (+) True LOC110537439
XM_021623469.2 mRNA upstream 16651 20608551 ~ 20612480 (+) False LOC110537428
XM_021623478.2 mRNA upstream 16651 20608555 ~ 20612480 (+) True LOC110537428
NM_001281340.1 mRNA upstream 33283 20585309 ~ 20595848 (+) False wnt4b
XM_036941462.1 mRNA downstream 30568 20679841 ~ 20695430 (+) False LOC110537492
XR_002475635.2 mRNA downstream 30568 20679841 ~ 20695430 (+) False LOC110537492
XM_021623578.2 mRNA downstream 30575 20679848 ~ 20695430 (+) False LOC110537492
XR_002475636.2 mRNA downstream 31995 20681268 ~ 20695430 (+) False LOC110537492
XR_005035592.1 mRNA downstream 33133 20682406 ~ 20695430 (+) False LOC110537492
TU138671 other upstream 210003 20407862 ~ 20419128 (+) True G120169
TU138791 other upstream 308875 20319739 ~ 20320256 (+) True G120259
TU138741 other upstream 444506 20179408 ~ 20184625 (+) False LOC110537348
TU138728 other upstream 457750 20171082 ~ 20171381 (+) True G120211
TU138669 other upstream 472021 20145733 ~ 20157110 (+) True zyx
TU139024 other downstream 251001 20900274 ~ 20973920 (+) False erfl3
TU139026 other downstream 325578 20974851 ~ 20976199 (+) True erfl3
TU139028 other downstream 342481 20991754 ~ 21015891 (+) True LOC110509768
TU140444 other downstream 892824 21542097 ~ 21547034 (+) True LOC118938333
TU140532 other downstream 936148 21585421 ~ 21586101 (+) True G121677

Expression Profile