RNA id: XM_036941433.1


Basic Information

Item Value
RNA id XM_036941433.1
length 3038
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC110537462
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20651234 ~ 20660987 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATGCCCAGAGAATTTTGTTCAATTTAATAGCGTCCCCAagtgacagagaaacagaggctGGAGATGGTCCACGAGATGATGAAAGAAAACCGAGACCTGCCactcatcaatcaacacatgcAGAAGACATTTGCTCTCCGACACCAAGAAATAGTTCAATCCAGTCCCACGGTAGAACATCTCAGAACACGCTGGCCAGCACTCTTCCTCGAAGCCCAGGTACATGCTGAGTTTCAGAGAATCACCAACCAGAGCCTGCAGCAGACGTTCTACTCTGCCTTGGACCACCACACGCCCCGCCTGCTGACCCTgttcagggaggaggaggggaagtcCACCACCCATGAAGGGAAGTTCTCAAGCATCCTGAGAGTGTACAACGAGCAGTGGGAGAACTCAGCAACCCTGGTATACTGGATGGAGTTGCCATTCTCTCAGTGGTGGGCCAGCACAATGAGGTGGTGGGTGGTATACCCATCAGACCGGCCCATGTATCCATTGTCCTTGAGGATAAGATCGTCATGACTAACTCCCGCTCCTGGCCAGACGCTCTCGTGGTTGTTTTTGGGTTACTCTACTCCCTCCATCTGAACTACCCCAAAGCCCTGGGCAGCACCTTTGAGTTCATGCAGAAAATCTTCCTGAATCTCGACGATGGAAAACTGAAGCCCAAGCGGCTAGCGCTGAAATATGAACTGTTGGCCTAATTCTGTAGTGATGAGATGGAATTTTACTTTGAGTGACCTCCTATATGCCGAGCGAGTGGTTTGAAAACAATGGTTATTTTTGTTTGgtttgcttttatatttttgtacgTTTTTTGTGCAAGTAATGGATTTGATATTGTATTTCAATTCACTTATAACCCTTTAATATGAAAAGAAGACACAGGTCAGTCAACACATTAACTTGCCACATACAGTCGATCTGCGACCCAGTTCTCTACCTTTGTTATACAGCTGCAGAAAACCCCCAAACGTTTTCTAGAAGATTTCACCTTTGCAGACATTCCGACTGGCACAAAATACATGTTGATAAGATGTTTATGAAAGTGTCTTTACCTGCTATTGTCTATCTTCTCTGGCAGTGTTGCGTGATCCTGGCCTTCTATCTGAATTCTAAATGCTCACCAAGACACAGGACTATGTCTTAACTGTTGTAACACACTGAGTATACGCTGAGTGTACATTATtgtgttgcacccccttttgcactcagaacagcctcaattcgtcaggcaTGGGCTCTACAAGATGTCaaagcgtttcacagggatgatggcccatgttgactccaatgtgtccaacagttgtgtcaagttggcgcGATGTCCTTTAGGTAATGGACTGTTCAGAGATGACGTCTGTGTGTGTTCCGTCTGACTCCTGTCCAGCTGAGGTTTCTCCACACTGCCGGCACAGCTCCATGTCAACTTGATGCAAACACTGGTATCTGTGAGACGGTTTCTCTGTCAACACAGCTCactggtttgtctgtctgtctcgttgGTCTGCCTGTCGCTGGTATGTGTGTCTGTTGCTTGTCTGGGAGGTAGTGTTGGTCGCCTTCACAGTTCTCTCAGACACaaaggtctctgtgtgtgtgtttttgtgtgtgcgcacatgcaaGTGAGTCTGTTCTTAATTACATGGAGCACCATGTCAGCATATTTCTCAGCTTGTGAATAGATGAGTGAGTTAATGAGTGAGGGTTTTATGTGTGTTTTCCTACGACTAAGGGAGTAGTTATTAGATTTCATTGTCATGCAGCCTGAGCCCTCCCCCTTTGACTGACACTGAGAATACTTCACCAGATTGGCAAAAACAAGAAACTATGAAACGCCTGTGACTCCAATTAGTATATAATCAAGGCAGACTGTCAGTCAGTCCATGGCTCTGTGATCACATAAGTAGTTCACTTACCGGTAGAACAGACGGCACCATTGACAGAAAGTCTTGCCTGATTGAACGCCGAGGGAAGCCTGGTACAGAAATGTCCATTTACTTAGAAATTACATGATTAAAATGGTAATTACACTAATTACACTAATAATTTGATTGGCGAAACTTCTGTGTTAGCCAAGCTGCAATGATGGACAGGCCATGTAAATGACATCTATTTATTCTATGCAACCTATTTCTACGTCTTTGACATTGTCCTTCTCACTCACCCTGGTGAAGGATGGCTCTAAGAATATCTCCCTGATGTGATGTCATCAGAATGGAATGTCAGGATCGTCCTGTAGATGCTGCAATACAGAATGCTGCCGACATACTTATCTAAGGTGACTTTAAACGCCACACAACCAATTTACCATGGAATATCTCCGCTCAACATGAGGGCAGGAGAAGGCTAATAGCACTTGTGACACGAATATACCTCTGTTTACTTCTTTACTACTAATGAACTCTTGTTGAATGCATGTTATTCCTATGGTTAATGCAGAGTACAGTAGCTGTTCTGAATGGCAACATGGCTGACTATACAGCGCTATAAACAGACTATAAGGCAAAGACCCACACTGTCAGTTCCTAACTGTAAATAGAGATCAAAGTAAAATAGTTTTATGTGAACAGTCAGACCGTAGCATGCTAACATAGTACGGTCCAGCTGCATATGCAATTACCATGTAAATACTGGATGGTTTTAACTTCACTTGGTATAAAGAGGGAATCGTAAGCCACACCATCACATGTACTGTATGAATAGGATGAAGTTGCCTCTTTGTGGTTGAAACATTATTAATACAAACTATAGGAGCATTTATTCTAAACAGCACAGAGGCATTTGTCACATTTAGCCTAGAACACATTCAGCCCTGAGCTTCTAACAGCATCGGTAAATCATAAGATTCCAGCTCCTCCTATCAGTTTCCTTCTTTCTTTTACAGTGTGGTCTGGAATGTTGGCTTTACAGGGATGGTGCTCACTGGTGCTACACAACTTTCATGTCTCACACTCATCCCATACATATGTCTCCTATTAGCTACACTcgcccagagagagggaggaaagggaaggagagaggggggggaagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140011 lncRNA downstream 7412 20641755 ~ 20643822 (-) True G121238
TU139992 lncRNA downstream 22753 20585748 ~ 20628481 (-) True G121219
TU139973 lncRNA downstream 77283 20568600 ~ 20573951 (-) True G121203
TU139962 lncRNA downstream 107565 20542568 ~ 20543669 (-) True G121197
TU139947 lncRNA downstream 109864 20538651 ~ 20541370 (-) False G121197
TU139979 lncRNA upstream 39408 20694369 ~ 20695390 (-) True G121209
TU140067 lncRNA upstream 142433 20797394 ~ 20798054 (-) True G121286
TU140091 lncRNA upstream 208393 20863354 ~ 20863912 (-) True G121310
TU140093 lncRNA upstream 212332 20867293 ~ 20867528 (-) True G121312
TU140095 lncRNA upstream 215640 20870601 ~ 20870931 (-) True G121314
XM_021623455.2 mRNA downstream 48746 20597056 ~ 20602488 (-) True LOC110537423
XM_036941394.1 mRNA downstream 48958 20597056 ~ 20602276 (-) False LOC110537423
XM_036941363.1 mRNA downstream 68277 20506223 ~ 20582957 (-) False LOC110537414
XM_021623535.2 mRNA upstream 8031 20662992 ~ 20665219 (-) True LOC110537468
XM_021623547.2 mRNA upstream 13607 20668568 ~ 20673278 (-) True LOC110537475
XM_021623558.2 mRNA upstream 18815 20673776 ~ 20676032 (-) False LOC110537483
XM_036941455.1 mRNA upstream 18815 20673776 ~ 20688855 (-) True LOC110537483
XM_021590907.2 mRNA upstream 409106 21064067 ~ 21074205 (-) True LOC110509793
TU139978 other downstream 23534 20626557 ~ 20627700 (-) True G121208
TU139931 other downstream 150647 20498896 ~ 20500587 (-) True G121188
TU139863 other downstream 185445 20462682 ~ 20465789 (-) True LOC110509624
TU139782 other downstream 438867 20211068 ~ 20212367 (-) True G121046
TU139615 other downstream 722774 19924098 ~ 19928460 (-) True LOC110537275
TU140219 other upstream 401637 21056598 ~ 21058849 (-) True G121421
TU140354 other upstream 633655 21288616 ~ 21346687 (-) True G121533
TU140595 other upstream 807732 21462693 ~ 21463030 (-) True G121738
TU140631 other upstream 835306 21490267 ~ 21547037 (-) False G121756
TU141778 other upstream 1141546 21796507 ~ 21812432 (-) True G122733

Expression Profile