RNA id: XM_021623547.2



Basic Information


Item Value
RNA id XM_021623547.2
length 2106
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC110537475
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20668568 ~ 20673278 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGGCGACGACCttgggtataaaaaaaaaataagccCATGTAAGCGCATTGGGCTTGTTTTGGACAGAGTTAAAGGAaagtgaaacctctcgcttcgcctcagCGCTCTTTATATTTTCGACTTGGTAGCTATCTAGCCAACTTTCCTTCTCTACAAATGTCTAAAATAGAGTTATTGAGAATGTTTCTAAACCAGAGATTGATAGCGGCAGCTGATGAGATATTTGGTGTCGTTGAAGAAACCCTAGCAAGGTACCAGGAAGAGGTTTCTCGCACAAGGGAGGAGAACAGTCGTCTACGGCTCACGCTCGATATCCGTACTAAACCAGATATCAAGTTACATAGACAAGatctCCAGCATCTAACTGTCACCGTGTCTGATGAGGTGGTTTCCCCTGAGCAGCAGGAGTGGAGCCCCAGTCTGGGGCAGAAGGACCCAGAACCCACACGGATGAAAGATGAACAGAATGAACCAAGGACCAGTCAGGAGGATGAGAATCATTTCAATGAGTTTATCAATTCTTACGGCTGTGTATCAAGTGACTATTATCAGGACCCAACTCAGCCCTCACATGGAGAGAGATACTCTCTACCCAGCACCTCAACTGAACAGATCAAAACAGAACCTTATGTAGAAGACTATGGTGTATCAGAACCAACCAGAGAGTCTCAGCCCTTCTCTGCAGTAGATACGGAGTGTTCTGCAGCTCAGAGTGAAAACAGAGGACATATTGACATGATGGAGTGTGGAGGATCTCTGTCAGGTCTAATGTTAAAGCCTCTCAAATCAAAGAGAACAAAGACAGTAAAAGGACAAAGTTCTCATAGTGTTAAGGACAGGAAATTGAACCATCTAAAATCACACTCGAGACCCAGTGTAAGCTGGGATGCTGCTCCTAGTTGTAAGGTATGTGGAAAGCAATTTGACTCCATGGCGTCTTTATTAAATCATGTGCAAACGCACACACAGGATAAAGAACATCTTTGTGGTGTGTGTGGAAAATTCTGTCAGTCTACAGAAAGTATGATGGATCACCTACAAACTCACATCGGAGCAAAGTGTTGTCATATTTGTGGTAAATATTTTGCTTGGGATGCTTTCCTGAAAAGGCATTTGAGGagtcatacaggggagaagccgtTTCACTGTCATGATTGTGGCAAAGGATTCAGTCAGAGTGGAAACCTGGCGGTGCATATGAAGAGCCACTCTGGGGAGAAACCACATCGCTGCCCTGTTTGTGGGAAATGTTTCAGCAGAAACCCTGATCTGACAGTCCACATGAGGACTCATACAGGGGTGAAACCATATAAGTGCCAGTATTGTGGCCAAGGATTCAAGCAGAATTATCACCGGAAACTACACATGAAGATCCACATGGGAAAAACCATATCATTGCCATCTTTGTGACATGTATTTCAGCACTAGCACCCAGTCAACCGGGCTTGAGATTTCACATGGAAGAGAAGGTGTCACTGCCATGACTGGCAGAGGCTTTGCATAGACTGGAAGTTTGGGAGGACATATAATGACAATGCACAGAATACTTTAGTGTAGAAAATACTGACTGTAGACCTGGTTTGTGATACATGTTTCACTCAGCCGCTTTATTGAGGAAATATGTTACTCGCAGTGACTATTAATGTGGTTGTTTTACCTGTTTTGAATACactgactgtaagttgctctgggtaAGACAGTGCAATtatgtttcactgttagtctacacctgttgcttACAAAGCGTGTCACAAaaagattgatttgatttgattgctgcTAAATGCTTCAAATGGATGAAGTCCCCTAGAAGGTCTGAGAACATTCACAAGAGGGAGAAACCATAATAACAACCTGATGAAAATCCTCCTGACAACATGGCAGTTGTCCCCTGTGTAGGGAGAGTGTTTCAGACAGTACAAGAGGTGCATTAAAATATGTAGTTCTCTGAATCGACTGGCTTTATTTctatgaaatacagtgccttcagaaagtattcataccccttgacttattccacattttgttctgttacagcctgTATTCAAAGTTGATTCATatttttcctcacccatctacacacaataccccataataacgaagtga

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU140013 lncRNA downstream 15003 20652999 ~ 20653565 (-) True LOC110537462
TU140011 lncRNA downstream 24746 20641755 ~ 20643822 (-) True G121238
TU139992 lncRNA downstream 40087 20585748 ~ 20628481 (-) True G121219
TU139973 lncRNA downstream 94617 20568600 ~ 20573951 (-) True G121203
TU139962 lncRNA downstream 124899 20542568 ~ 20543669 (-) True G121197
TU139979 lncRNA upstream 21091 20694369 ~ 20695390 (-) True G121209
TU140067 lncRNA upstream 124116 20797394 ~ 20798054 (-) True G121286
TU140091 lncRNA upstream 190076 20863354 ~ 20863912 (-) True G121310
TU140093 lncRNA upstream 194015 20867293 ~ 20867528 (-) True G121312
TU140095 lncRNA upstream 197323 20870601 ~ 20870931 (-) True G121314
XM_021623535.2 mRNA downstream 3349 20662992 ~ 20665219 (-) True LOC110537468
XR_002475629.2 mRNA downstream 7581 20651234 ~ 20660987 (-) False LOC110537462
XM_036941430.1 mRNA downstream 13605 20653904 ~ 20654963 (-) False LOC110537462
XM_036941433.1 mRNA downstream 13607 20651234 ~ 20654961 (-) False LOC110537462
XM_021623455.2 mRNA downstream 66080 20597056 ~ 20602488 (-) True LOC110537423
XM_021623558.2 mRNA upstream 498 20673776 ~ 20676032 (-) False LOC110537483
XM_036941455.1 mRNA upstream 498 20673776 ~ 20688855 (-) True LOC110537483
XM_021590907.2 mRNA upstream 390789 21064067 ~ 21074205 (-) True LOC110509793
XM_021623668.2 mRNA upstream 648735 21322013 ~ 21348882 (-) False LOC110537544
XM_036941641.1 mRNA upstream 648735 21322013 ~ 21348882 (-) False LOC110537544
TU139978 other downstream 40868 20626557 ~ 20627700 (-) True G121208
TU139931 other downstream 167981 20498896 ~ 20500587 (-) True G121188
TU139863 other downstream 202779 20462682 ~ 20465789 (-) True LOC110509624
TU139782 other downstream 456201 20211068 ~ 20212367 (-) True G121046
TU139615 other downstream 740108 19924098 ~ 19928460 (-) True LOC110537275
TU140219 other upstream 383320 21056598 ~ 21058849 (-) True G121421
TU140354 other upstream 615338 21288616 ~ 21346687 (-) True G121533
TU140595 other upstream 789415 21462693 ~ 21463030 (-) True G121738
TU140631 other upstream 816989 21490267 ~ 21547037 (-) False G121756
TU141778 other upstream 1123229 21796507 ~ 21812432 (-) True G122733

Expression Profile


XM_021623547.2 Expression in all Baseline Samples

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XM_021623547.2 Expression in each Bioproject

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XM_021623547.2 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 60.
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