RNA id: XR_002475635.2


Basic Information

Item Value
RNA id XR_002475635.2
length 5101
RNA type mRNA
GC content 0.49
exon number 9
gene id LOC110537492
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20679841 ~ 20695430 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggcaattgtgcgccaccctatgggattcccgatcgaacccgggtctgtagtgacgcctcaagcccCTGGATACTGCTTTTATCAATCCTAACCATCTCAGGTCTATGATTACAAGAGTACACAATAGGCATATTCTTCATCACATCCTTATGGACCTTGGCCACtccagagccatgtatttagaaaatctaaatacatggctctgtgCCACACTATAACCTTAAAGGCAGCATATACTAAGACGGTATACTATACTCTAATTGTTAACACTCACACTTTGTGTCCATCTCACCAGATTACACAGCTTCTCTCAGTTGCACCTGACTGAAGGCATAATTTCAGGTCATGAGGGACAACTACGACACCGTCCTCGCATCCAAGAACCAGGTCTGGATCCAAAATGATGCTTTGACTTCAACTCAAGCTGAGCTACAGAAAATTAACAGCTATGTGGCTGTGGTTGAGGACCAACTGGAGAGAGACTACATGTAACTTGTCGCAACCAAGGACCAGTCAGAGAGGCAACACAGAGATCTTGCTGCTTCTCATAACGAATTAGAAAGAGAGTATGAAGGCCTACTGACATCCAACAACCAATTGTAAAAAAAGAAACTACATAGACCTGACAGCATCTAAAAACCAACAGTATCTAAAAACCaactacagagagagataaaagatCTCACCTGAACCAGGGAATGGTCACAGAGACAACACCTGAACATCAGTGCAGCTTAACGtctcgatcacaccgacagcgtcattgcattttggtacaccagaagtacattcatttccaatggaatgcTACTTTTGCCTTCCAgcattgcagaggcagttgcagtgcgttctgtgtggtgcatacgttgGAATGATCAAACTGTATGCCTCGATGGCtcgacagaaatggtagcagaaggtaaATGTTGAATTTTGTTGcaaacatatccagatgatgctgcataACATTTTGCACAAAGACACTGTTGGTGTGATCAAAGCGTTATGACCAGTTGAGGTGAGAGCATGTGAGGGTCGCAGAGACTAAAAACCAACTTCAGTTAGATCTCATAAGTCTCTTTGAAACTGAGGCGATTTTGAACAGAGACTTTGTTGTCACGGTGAGGGAAAGGAATTCCCTTCAGAAGATGCCTACAGAGCTGGTCAACTTCCTGCCTGTGGACCGACACTGTCCACTCAGAGACCAGATCACCCAAGGTGTTACTTCTTCTCCACTGAGGAGGAGCTGGAGCAGCGGTCGAGTTGACTGTGTTCAACAGGGGGCGGAGATCTGGTGGTCATTGACAGTCCAGAGGAACAGGTAGAAAGAGCCCAGTGCTGTGAATGTGAGGGGAGACAGTGTGTGCCTCCACCATCAGAGAGACCAACCCTTCTCAGAGCTGGAGAAGAGACCTGCAGCATCATGTCCGGATGGATCTGTGGGAGCTCAGCGCTCATATAGTCAGCATTGCCATatagacacacgcatgcacagaGCACATTTATATGTAGCCTTAAAATCCTCCGTTAAAATAGCATTAATACACGATAGAGCGTGATTTCTTGTGGCAATAGCATAGCGGTGCTGGTCATAGTAAATGGTGAAAACGACATGTACATAAGAGGATATGTATTAGATATTCTGGGGGAAATGATCTGATAGGTCACTATACTGTTTTGAATCTGCAATACTGCCTCATTCGCGTTCTTCATGTATAGAATGAGTAGGCCTCTGACTACAGCATCATCCTCGTCTCCTCGCCACACGTCCTAAAAATAAGTGCAGTGATTGGTTACTGCTTGTTGTTGTTCTACTGCCAGCTCTGCGTGCGAGACGAGGCGTATTCATTAGTTGATttagttgcaaaacgttttgtctGTTGATAAACGTTTTGCAACGAAAACTAGAGTTTATATTGGACACATTTAGGCAGGTCCCTCCCCGCTTCGTTCCGTTTCTGTTCCATtttttctgtttgcttccgaGAGTAAACGGTTTCCGTTTTGCAACAGACAAAACGTTTTAGAACCGAAcctgactaatgaatacaccccagctgTGTTGACAACACTGACCATCGTCGAACAACGAAGGTGCATTGGGAAAGGATAGCCAGCTAGCTTGTTAACAATGGCAACCATGCGTCGTCCAAGGTACTCTCTCCGAGACTCTCTGTACTGGGACGAGACTGAGTGCCTGACGTACTATGGGATGCTCTCTCTACACGAGATGTTTGAAGTTGTCGGTTCTCAACTGACAGAGACAGACGTTGAGGTGCTGTCGTTCCTCTTGGATGAGACCTATCCGGCTGGAGGGCACCCCTTGGACCCAGCTGGCTGGACCAGCGAGCCCGGTGAGGAAGACCCTGAGGCCAGTAAAGGAGTCTCCCCCAGCCCAGTGCTCCTGGAGGCCTGGCGGCGGTTACAGCCCAAGGTTCCTGCCTTGGCCTGCCCTACCGCTGCCCGCCACAAGCCCAAGAGTGGGCTAGAACTGCTGCTGGAGCTGGAGAGACGTGGGTACCTCAGTGAGGGTAACCTGGAGCCCCTGTTGCAGCTGCTACGAGTCCTGACGCGACACGACCTCCTGCCTTTGGTGTCCCGCAAGAAAAGGAGGACAGTATCACCAGAACGTTTCAGAGTGGACTACGGGACAGAGGACAAAAAACAGGTGTGCACATCTGGACTGACTGACCCCTGTGCACAGACAGAATCACACGACGAACACGCCACACAGCAATGGAGGGGGGGTGTTGACTCTGCCAGGCCAACGCCCGCCCCCCTACGGAAGAAGAGGGGTAAAGGCCGCCGCTGGACCAGCAAGCCCACTGCCCACAGGAGAAGAACGGGCATCCCTGAAACTCCTCCCCCACCTATATCTGAGAAAGTGACCTGCGACATTCGTCTGCGTGTGCGAGCAGAATACTGGGAGCATGAGTCGGCTCTGCGTGGCAGCGTCTCCTCGGACAAGCAGCAGCCCCTGGAGCGGCAGTTTGAGCTGTTCAGTCGTGCCACCTCCGTGCTGCGCGCCCGCGACCTGGGCTCCATCATCTGCGACATCAAGTTCTCTGAGCTGGACAACCTGGAGGCCTTCTGGGGGGACTATCTGAGTGGAGCGCTGCTAGAGGCCCTGAAGGGGGTGTTCATCACAGACTCTCTGCGGAGGGCGGCGGGGAGTGAGGGGGTCCGGCTGCTGATCAGTGTGGACCAGGATGACTACGAGGAGGGTCGCAGACTGCTGCTGGATGCACAGGAACAACAGGCCGGCTGCTGGGGACGAGACAGGCATCAGAGCCAAATACACTACCTGGTCTCACGTTGTCATACTTCCTAGACCCAACCTGAGAAAGCTGGTTATGGACGTTCggctctgacagacagacaggcagctgtGCGAGGTCATGAGCCCAAGGATAGAGGAATGAAAAGGAGAATAAAATATGAAGAGGAacatttttcttttttctctcctttttaAGTCTCTCATGCTGAGAATAGAGGATACAGCCACTCCTAGTTCAGGGGAATGAATAGTCCCCAGGGAAAACAGCCAAACTTGGAGCAAAGGCAAACTGGACTAAAAGACTTGACACACTGTTCTGTTTGGAATTGATAACACAAGTTGCGCTGAGCCTAGATGCCCTCAGGGCACTGAGGAAGAGACTGcctttgtcacacacacacacacacacacacacacacacacacacagagacaaactaaACTTCCactgtagcacacacacacacaaactaccacTGTATCTAACATAAACACTCTTAAAATCATCCACACGATGAACCATCAGCGCTGCCTGTAAGACTCATTGAAGCCAAGAGACATTTCTTGCTAACAGTAACAGCCCAGATACCAACTAGACTGCGCTAATGCTGAGCATCCCTGGTTATGTTTGAGGAGCGTGTGAGATGCCCTGCAAGGCGAACTTCACCCATCTtaatattagtttgtgtttccATTGAAATGTATGATTTTGAAAAGATGAGCGAGACTGCAACTCTCAGACACCGAGGGAGAGATGATGGGGAAATTACTAAAGATTATGTTTTGACCTTTTGGGAGAGATTTAGAAATAGATAGCGAAGGGAAGACTACCTGAGGACAGTGTAGTGGACAAATAGCTGGTCCTTCGAGAActccagtccacacacacaccatgatcaCAAGCCACTGGTAGTCCCATCATGCTAACCCAGGGCCTGATGGCTGTGGTCAGGGGCCATCTCATCTCAGATGCCAGTAGATGATAGGAGTGATTACCTCTCAACCTCAGCCAACCATGGAGAACTCATCACCACAAGTTGTTGAACAGCAGCTGGGATAACACACTAGGCTGTGCTCACCCCGGCTTCCAGCAAGGCAAGGCCACTGCCTTTCCCATTGGAACTGAAGCACAGGACAGTGCTTCAGTCAATAAAACTGATGTAGAGGAGATCAATATCAGAAGGATACATCCTAGTTCCACTCAGCCCTGACTTGTAGGCCCCACTAGTGGCTCACAGAGCGCTGTCTGTCTCTAGTCTACTCACCCTGGTGGAACTAATGCCTGAACTCTTCTGAGTGGGATCAAtaaccccctctgtctctccaccaccaccatgggaggAGAAAGAGTAAGGGGGAGAGGTAGGAgaagggaaaagagaggagaggtagaaggaaagagaggaagagggagaaggatCCCCACTTCCATCCCGCCTTTCAGCTCCTGGACAGCCGCCTCATCCTCTGGAGGATAAGTCCCCTGATACAACCAGGCTGCCTGGTCTGCTACAGCACTGTGTCTGGTTCACACAGCCCTATGGGACCAGGGATGGAGGACTAGAGAGGCACTCAGGAAAACCTTAGTAGTGTTTGCTTTTTCTGTGTTTTGATATATGGATTCGTTAGTGTAGCTTTGTATTGTCCATAAgagaaaataacaaaaatactGTGTGTTCTAGTTCATTAATTTAGGGTGAACTTTTGTTTAAGTATCTGGATATTTTTATTTAGGCACTGCAAAAGTGCTGTATATTAGTTTAATATATCAGTGGAAAGTTGGAATtatttcaaataaaaataaatgatttatCGAAGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138910 lncRNA upstream 82968 20595713 ~ 20596873 (+) True wnt4b
TU138904 lncRNA upstream 96871 20582204 ~ 20582970 (+) True G120346
TU138900 lncRNA upstream 100080 20579295 ~ 20579761 (+) True G120342
TU138866 lncRNA upstream 137729 20536603 ~ 20542112 (+) True G120317
TU138870 lncRNA upstream 139539 20538714 ~ 20540302 (+) True G120318
TU138986 lncRNA downstream 40310 20735740 ~ 20736339 (+) True G120402
TU139002 lncRNA downstream 63928 20759358 ~ 20759746 (+) True G120418
TU139009 lncRNA downstream 95815 20791245 ~ 20796296 (+) True G120425
TU139035 lncRNA downstream 136069 20831499 ~ 20838492 (+) True G120450
TU138818 lncRNA downstream 159837 20855267 ~ 20858679 (+) True G120277
XM_036941406.1 mRNA upstream 30568 20629131 ~ 20649273 (+) False LOC110537453
XM_036941407.1 mRNA upstream 30568 20629131 ~ 20649273 (+) True LOC110537453
XM_036941410.1 mRNA upstream 31641 20629126 ~ 20648200 (+) False LOC110537453
XM_036941413.1 mRNA upstream 51359 20615636 ~ 20628482 (+) False LOC110537439
XM_036941479.1 mRNA downstream 45621 20741051 ~ 20885076 (+) False pou2f2a
XM_036941488.1 mRNA downstream 45621 20741051 ~ 20885076 (+) False pou2f2a
XM_036941496.1 mRNA downstream 45621 20741051 ~ 20885076 (+) False pou2f2a
XM_036941503.1 mRNA downstream 151885 20847315 ~ 20885076 (+) False pou2f2a
XM_036941508.1 mRNA downstream 151886 20847316 ~ 20885076 (+) True pou2f2a
TU138671 other upstream 260713 20407862 ~ 20419128 (+) True G120169
TU138791 other upstream 359585 20319739 ~ 20320256 (+) True G120259
TU138741 other upstream 495216 20179408 ~ 20184625 (+) False LOC110537348
TU138728 other upstream 508460 20171082 ~ 20171381 (+) True G120211
TU138669 other upstream 522731 20145733 ~ 20157110 (+) True zyx
TU139024 other downstream 204844 20900274 ~ 20973920 (+) False erfl3
TU139026 other downstream 279421 20974851 ~ 20976199 (+) True erfl3
TU139028 other downstream 296324 20991754 ~ 21015891 (+) True LOC110509768
TU140444 other downstream 846667 21542097 ~ 21547034 (+) True LOC118938333
TU140532 other downstream 889991 21585421 ~ 21586101 (+) True G121677

Expression Profile