RNA id: TU139024


Basic Information

Item Value
RNA id TU139024
length 977
RNA type TUCP
GC content 0.40
exon number 4
gene id erfl3
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20900204 ~ 20977481 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGCAGAATGTTAGTGAGTGGAGGAAGAAAGAAAGTCTAAAGAGAGGACGACTGCTATTCTACAGAACGGTTATTTTAGCGAATATGTCAAACAACGGGGAAGATGCGATTGAGATGGAGTAAACAACTCGACAGTTCGTGAAAGTATATGCAAACAAGGAAAGAAGGGTTTTCGGTTTGTGTGCTTGTCGGGACGGTTGACCGTGTTCCGCTGCACCTCGAACAGGACAAGGCGAAGTTGCCGTGGGACAAACAGCAGTGAGCTACATCAACTGACTGCGATTCGGGGAAAGTAACGTTACCCGATCAGTTGAGGAAGGGGTTATTGGGAAAGAAAGTGGAAGCAAAGGGGCCCGTGAGTGGAGCAACGGTGGAAAGTTCCAAACCAAAGGAAGGGCTCAGAGGGAGACGACTTTTCCTTCCACAAACGCTACTGACTTGAGATCCACcaagctcgctagctaacgtaaACTATCCTGCAACACTCAAAATGAAAACCCCCGGAGATTCGGggTTTGCCTTTCCAGACTgggcctacaaacctgagtcGAGCCCCGGCTCGCGGCAGATCCAGCTGTGGCACTTCATCCTGGAGCTGCTGAGGAAGGAGGAGTACCATGATGTCATCGCCTGGCAAGGGGACTATGGAGAGTTTGTCATCAAGGACCCTGACGAGGTGGCCCGGTTATGGGGGGCCCGCAAGTGCAAACCCCAGATGAACTACGACAAGCTGAGCAGGGCACTCCGGTATTACTACAACAAGAGAATCCTCCACAAGACCAAAGGGAAGAGGTTCACCTACAAGTTCAACTTCAACAAACTGGTCCTGGTCAACTACCCATTCATAGACATGGGCTCCACAGGTAGTGGTGTTCCTCAGAGTGCTCCACCATTGCCTTCCGCAGCCGGAACTCATTTCCGCTTCCCACCGTCCACGCCATCCGACATGCTTTCACCCAATGAGGACCTGCGTAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139060 lncRNA upstream 24435 20875403 ~ 20875839 (+) True G120471
TU139058 lncRNA upstream 25766 20874273 ~ 20874508 (+) True G120469
TU139057 lncRNA upstream 29055 20870965 ~ 20871219 (+) True G120468
TU139055 lncRNA upstream 31938 20868019 ~ 20868336 (+) True G120466
TU139054 lncRNA upstream 32450 20867573 ~ 20867824 (+) True G120465
TU139113 lncRNA downstream 33169 21007089 ~ 21011765 (+) False G120512
TU139114 lncRNA downstream 36073 21009993 ~ 21011765 (+) False G120512
TU139112 lncRNA downstream 36834 21010754 ~ 21011765 (+) True G120512
TU139153 lncRNA downstream 134173 21108093 ~ 21108341 (+) True G120540
TU139169 lncRNA downstream 191094 21165014 ~ 21165265 (+) True G120555
XM_036941479.1 mRNA upstream 15198 20741051 ~ 20885076 (+) False pou2f2a
XM_036941488.1 mRNA upstream 15198 20741051 ~ 20885076 (+) False pou2f2a
XM_036941496.1 mRNA upstream 15198 20741051 ~ 20885076 (+) False pou2f2a
XM_036941503.1 mRNA upstream 15198 20847315 ~ 20885076 (+) False pou2f2a
XM_036941508.1 mRNA upstream 15198 20847316 ~ 20885076 (+) True pou2f2a
XM_036941543.1 mRNA downstream 16211 20990131 ~ 21058856 (+) False LOC110509768
XM_036941553.1 mRNA downstream 17690 20991610 ~ 21058856 (+) False LOC110509768
XM_036941535.1 mRNA downstream 17691 20991611 ~ 21058856 (+) False LOC110509768
XM_036941570.1 mRNA downstream 101320 21075240 ~ 21103699 (+) True LOC110509817
XM_036941594.1 mRNA downstream 131580 21105500 ~ 21136731 (+) False LOC110509776
TU138671 other upstream 481146 20407862 ~ 20419128 (+) True G120169
TU138791 other upstream 580018 20319739 ~ 20320256 (+) True G120259
TU138741 other upstream 715649 20179408 ~ 20184625 (+) False LOC110537348
TU138728 other upstream 728893 20171082 ~ 20171381 (+) True G120211
TU138669 other upstream 743164 20145733 ~ 20157110 (+) True zyx
TU139026 other downstream 931 20974851 ~ 20976199 (+) True erfl3
TU139028 other downstream 17834 20991754 ~ 21015891 (+) True LOC110509768
TU140444 other downstream 568177 21542097 ~ 21547034 (+) True LOC118938333
TU140532 other downstream 611501 21585421 ~ 21586101 (+) True G121677
TU140829 other downstream 847294 21821214 ~ 21825094 (+) True LOC110537735

Expression Profile