RNA id: XM_036941543.1


Basic Information

Item Value
RNA id XM_036941543.1
length 10478
RNA type mRNA
GC content 0.57
exon number 21
gene id LOC110509768
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20990131 ~ 21058856 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTCTCAGATTTTTGTGATGTCTTTTTTAATCAACATGTATTATTTTGTATAAACAGAGATTCTactattttcatatttttttaatcGTTTCCAAATGGCATGTGAGGGAACACCAACAGGGGGACACCGACAGCGAGGACGCTGTGAGATGCTTCTGCCCAAGCTGTCTGTCTCTGCTCTGATTTTCAGAAGAACAAGGAAGGAAAAGGGGCAGTGAAAAAGAGAGCAGAAGACCAGGGGGCGAACGgaaaagaaagaagaagaagaaacagggTAAAAATAAGACGAGCCAAAGAAAGGAGAGCAACCGTCAGCACTCACCCCACAGAGTATAAAGGCAGAAAGGAAAAGACGAGGTGAAGAGATGAAGCCACTAAAGAGACAGAGGGGATGCTCTCCCCCCTCCACGCGGGCCAaaggggggaagaagagaggggcgACAGAGACCCCCCCAGAGAGGGACAACAGGAACAAACTCAGGAAGGAGAACCAAGACGGACAGCCTCAATCCACGACCCCCGCCCACTTGCTACGGAAACAATCCAGAACCTCCTCTGACAGCTCTCAGCGGGAGCCAATCAGAGGCAGTGAAACCCCAAAGAAGGAGGGACCTAGAGAGCAGGTGCTGCCAAGGCAACCTGAAGATAAAGAGAAGACCGAGGACAGCAgagggggggttggggggaaacCAGGGGGGCCTAACAGCACCCCCACCTCCTCCCATAACAACATCCTCACCATCCCCACCCCCACTACCAGTCCCAGCCCTACCTCCATGTCCAGTAGGAAAACAGCCACCTTCAAGGCCAGAGTCCCCAAGAAGAAGTACATTGCTGAACACTATGCTGGTAGCAACGCGCCCAGCCTCACCTTCACCCCTGCCCCCATGCACAACAGCCACATTAACTAcagtagtactagcagtagtatTAACATCATCAACAGCAGTAGTACtaacagtaataacagtagtaataCCATTAGTAACAGTAGTAGGCCCAACACTACTATTAATGGTATTAACAGTGGTACTAATAGCATTAGTAACAGCATTAGTAACAGCATAAGTAACAGCATTAGTAACAGCCATAGTAGCAGCTCAGTCAGCCACTCGTTAGCCCCCAGTGTGTccaatgaggagaggagggtagctAGCAGCCACAGCCATGGCCCGGGGGAACAGGGAATGACAGGGGCCTCCATAGGGCCCAACGATGGTAGTGTGGCCCcccaggacagagaaagagacccccagggtggagagacagagggggcccCTAACTCAGTACGCTCCGTATCCACGGATACAGCCAGCGAGCACGATCTGGAGGTGAACTCCCAGCCCAGTACCAGCCCTGCTAGAGCCCCCTACCAGGGCAGTCTGTCCGGGGCGGATGCCCTGGCCAAAGGCCTGAAGAACCAGAGAGTTCTAGCCCGCTGTCGATGGAGAGACAGACTTAACGGAGAGcaaggtgggagggagagagagagggatggacccCTGTCTCCTATGTTCAGGGCTGGGGTGGTGCGGCGGGTGAGTGGGGGCAGCGCTGATATCCAGctgcagggggaggaggggatacTCTGTTACCCCTTTCAGGGGGGGACCGCACACCCGGAGTGGGAGGAGACGAGCGTGGAGTTCATCCTGGACGCCCCTCCACCCGGCACGGCGTCCGTGGCCATCGGGACACGCGTATGTGTGCCTTTCGGAGGGGGAGGGGGGCGAGATGGGGGTGAACAGGGGACACCTCAGCTATACAGAGAAGGGGTGCTGTCCCAGGTAGACCCACACCCTGCCGTGTCGTTCCCCTACAGGGTGCTACTGTGTGAGGATCTAGAGGTGCTGGAGAATGgattgagggaggaggagggagggatggaggagaagaggaggagggcgcAGGCCCAGGCTGTATGGGTGTCCAGACAGAGCCTGAGGCTGCTGACTCCCCCCTGGGAACTgcctcacccagagagggagagagagagagagagagagagggaggagagggagaggagggaggagatggaggtggagagggaggtgtgCCAGCTGAGTATTGGTATGGCGCTGGGTGGGCCGATGGGAGGGGGGGTGAGGTTGGTGCATAGCTTCTCTCCagatggggtggtgggggggcATCACTATGGAAACActcccccccatccctcctcgtTGGTAACGACCAGCGTTGTCACCATCACTGGAGAGGGTTACCCTGACAGAGAGATAGAACaagagagggaacaagagagacagaaacagccCCAAACACCAGAGGAGGACATGGAGATGTCTAGGTTCACTATGGGCACCCAGCATCGCCACATCCTCTCCAAGCCCCTCCTCGGGGGGCACAGCTACCCCTCCTCCCAACACCTGGTCCAGGGCCTGAGCACGCCACTGGGCTCTCACGTGTCCTCCCTCACCTTGCCTGGCCCTGAGGCCCTGGGCATGACCCCCCCACCACACCTACCCCCTTCCAAGAGCGCCCTGGTCCCCCTGGACAAGACCCCCTCCCAGATCCCCACCCCTACCCCTGGAGGGGGGTCTacctcctcctcagcctcctccTCGCGCTCCCGCACCCCCCTGTCGGCCGCCCTGCAGAAGTACAAGAAGGGGGACGTGGTGTGCACCCCTAACGGTATCCGCAAGAAGTTCAACGGCAAGCAGTGGAGACGCCTCTGTTCCAGAGAGGGCTGTATGAAGGAGTCCCAGAGACGAGGCTACTGCTCACGGCACCTCTCCATGAGAactaaagagatggagggagggggagagagggacagggggagaggaggaggggggagcagTTCGGGGACTATCACCCCCTCAGACCTGCGTGGGTTTGACTGGGATGAGACGTCCAGAGACAGCAGCGAGGCCAGCAGTAGAGGAGACTCCCGCCCTCGGCTGGTGCTGCCCTCCCTTCTACCCCATGACTTCTCCAGGTTTGACTTTGACGAGTGTGAGGCAGCCACCATGCTTGTGTCTCTGGGCAGCTCTCACTCTGGgaccccctccttctcccccatctccAACCAGTCCCCTTTCTCCCCCGCCCCCTCGCCCTCACCCTCCCCCCTCTTCGGATTCCGTCCCGCCAACTTCTCCCCCATCACCGCCTCCTCCGTCCTCCCCCCTCCTCGTAGACACAGACACCCCAGTGCCACGGGGGGCAAGCTGGGCACCCctgggggggcagagagggagaggcataCTTCAGGGGTCCAGCCGTCCTTCCACACTAACCTGACCTTCACTGTCCCCATGAGCCCTAGCAAACGCAAAATAGacgttcctcctccccctcctccctcctcccacccccACCACGACCACCCCCCCAAACCTGAGCTGGAGCAGGGGGACCTGAACTCTGCCTCGttccctgtcctctccccccAGACCCCAGCACACACCCACGCTTACAcacccaccttctcctctccccaaGGGGTGAGCACACCAACCAGCCGGCCCCCCTCCTCCCCCGccacctccccccctcccctcctggtGTCCCcaactcccccctcccctccagacTCAGGCCCCCGCCGTTTCCACCCCACATCCCAGCAGGCCTTGCGGGACTCTCCAGTGATAGTGCGGAACCCGGAGGTTCCTCTGGCCAAGTTCACAGAGCATCCGTTAGgccgtgggggggggggagtaggtgATCCTAAGAGTCTTAACAGCATTACTCCCCAGTCTGTCTCCACTCTCCAAGTCCCTGTACCCATCAACGCTGCTGCTGCCGCGGCAACCAACGGCACCGTCCTCCTCCAGAGCCCCACCCCCACTTTGGTGCTGGTGTCATCCGCCCCACCCTCCCTGACCTCCGTCACCCCCGGTTACCCCGCTTTGGCTTGCATCTCCATCTCTACCACGCCCCCCTCTTCGGGACCCCCCCTCACCAACCCAGCCAGCCCAGGGGAAGGGCGGGGTAGGACGGAGAGGACAGGCTTGTTTGGGGGGGAGGTTCAGCAGCCAGTGGCCTGTCACCCCTCTCCTACAGCCCTGCTGCCCCTCATACTGCCTGCAGAGAACCTGCACCCCACACCATGCAAAGACATCATCATGGGACGCCCCGGGACAGtctgGACCAACGTGGAACCCCGGTCAGTTCCTGTGTTTCCCTGGCATTCATTGGTCCCTTTCCTGGCACCAACCCAATCAGATGCCTCTACTCAGTCTGGTGAGGGCCAACAACCAATCAATCATCCCCAAGCTGCCAGTCTGAAAACAGAGTCTCAGGGGGGTGCAGTGCTGCTACAGGAGGCCAATGAGGACCCCCCCACCCTGGAGAGAGGACCCACAAGGCCAACTCCCTCCACAGATGACCTGaccccagagagggagagagaggccgaAAGAGAGAGGCCAGACAGTGAGACTGAGAGTGATGTGGATGACCCGTTCTTCCCCAGTGTTCTTCCTGAGCCGCCCTTGTCTGTGACTCCTGTGAAGAGACGCACTCAGTCCCTCAGCGCCCTGCCCAAAGATGGGGACAAAATCAGCCCTAACAAGAGGGAGAAGGACCACATCAGGCGGCCGATGAATGCGTTCATGATCTTCAGTAAGCGTCATCGAGCGCTGGTGCACCAGAGACACCCCAACCAGGACAACCGCACGGTTAGCAAGATCCTGGGCGAGTGGTGGTATGCCCTGGGGCCCAAAGAGAAGCAGAAATATCACGACCTCGCCTTCcaggtGAAGGAGGCCCACTTTAAGGCCCACCCAGACTGGAAGTGGTGCAACAAAGACAGGAAGAAGTCTAGTTCTGATGGCCGAGGGCTCCCGGGGCCGGGGGGCAAAGACATTAGAGAAAGGAGCATGTCTGAGACTACCGagccccATGGTGTGGAGCTCAAAGGGGTGGGGCCTGGCCTGCTGGGTGTGTCTGAGCGGAATCCAGGGGAGGGGCATGTAGGTCAGCTACCCCGCCCCCGAGCCTTCTCCCAGAGTGCCGTGCACAGCctggagaggagtgagaggggcAACACACAGGCCCTGGCCGAACTGTCACAGatGTGTGGGGATGGTGGTGGCCAGTTTTCGGGGCGTGCCCAGACCCTGTCCCGGTCTCAGAGGGGGGTCAGTGAGGACATGACCAGTGATGAGGAACGCATGGTCATCTGTGAAGAGGAGGGAGACGACGACGTCATTGAGGACCCGTACCCTGCCAGCTCCATAGACCTGAAGTGTAAGGAGAGAGTGACGGACAGCGACAGTGACAACGCCTCTGGGAACGAGAGCGATCGCAAGcGTGTCTTTGCTCCAGTGATCTGCTCTTCCTCCTCGCAGCCCACCCCCCACGGacgctccgtctctctctcctcctaccctTCCAAACGCTAcgacgaggagagaggaggggggctctCAGAccgcaggagaaagagaggaatagagggaggagctggtgatggaggaggagtggcatccctctctctttccctgtcctcCTCAGGCCACTCTGTCATCTCCAGCCCCGGAGGCCCAGTTCCTTCTGCCCTTGCCCCCCTtggcctgtctcctctcctcggGTTGGGGGCTGTCAGAGTGGCCTCTACAGTGGTGACCAACGTGGTTCGTCCGGTCGTGAGCACGCCAGTCCCCATCGCTAGTAAACCCCGAGACGGAGCAGCTTCATCCATTCCTCACCCACCAGACAGGAGGTCTCTCCCATTGCAACAGGCGCAGCTTCTGATTGACTCCGGAGCAGGAAGCGGAGGGCCTGGTTACTACTCCTCATCGTCACCCAATCCCATAGGTGCAGGGGCAGGTCCAGGGGGGCTAGTGACCAGCTTGGTGTTCCCGGGGCACAGCCAGTCCACCGTCCAGCTCATCAGTCCCTCCCCCAATCCGTCCTCCCACCACCAGCTGCCCCCCACCGCCCCTGTCTCTGcccccacacacaaccacaccaacggccccctgcccctctccctgctCCAGCCCCAGTTCCTCTCCTCGTCATCTCTGGCATCCCCCGGGGGCAAAGCCATCACACAGGTCCAATACATCCTGCCCACCCTATCAGCCAGCTCCAATCACAAGAGCCCCTCCCCTCAGCTGCACAACCTGCCGAACAGTATCTTCAACCTGCCCACAGCTCCGCCCACCCACATGTCCATAGCCAATGGGAAGCAGGTGGGGCTAGGCTCGCTGATGGGATACGCCTCCAGCCCAGCCGTGGGAGTGGTCAGCCCGGGAGccagagTGCAATCCCAGTCCCCAGTCCTACAGGGCAAGATGCTGCTTCCCATGGCAACAGTGAGGACGTCCCCTGCTCAGCAGTACCCCCTCGTGGCTCCACCTCTTCCTGTCCAGAATGGAGCTCAAGCAGGAAGCAAGATCTTCCAGATCGCTCCCATGCCTGTTGTCCAATCCCAGCTCCAGCAAGGCGGGGCAGGGCATCCTGGGAGCCCTTTTCCCATTACCATGGGAACGGCTACAGTGTTGCACCAAGGTTCTTCCCCATCTCAGACTGTGCTGCTGCCGCCCCCACCAACCAGGATCACCTATGTCCAGTCCATGCCAGGAGTCCCCTCTGCTCTGCCTCTGGTCTCCACAACAACAggctcctcctcccctcagcaggcCCAGCCCACCCCTGGATCAGCATATGTTTCGTCGCCCCTAGCAACGCTGGGCTTTACAGCCATAGCCCCCCCTGGACAGAACCTAGTCCAACCCCTCATCACAGgtcagCCTCCCCTTCAGGCCCCAGTCCAGTCCCctacctgcccctccctcccctctggcCCAGCCTCTGCTTCAGGGGGACAGATAATCACCGCCATCTACCCCCCTACCAGCGTCACCATGGCAACTGGGGTGGTCTCCATGGCTACCGGGCCACCCAGCATGGTGTACACAGTCTCCAGCTCCTCCAGTCTGTCCACCCACATCCTGCCCAAATACACATTCgcccccaccacccccaccacacacactcacacacacacccagctccagtcagacagacaaacagacaggcatgTGGGGGAGAGACCCACGGACAGAACGTCTCACTCTCAGTCAGAGAAAGCGGCAGACAGACTAGCGGAGACGCAGCCTGAGCTACAGGCGTACGGAAAGACGGACAGGCCAACCCTCAcgcaggcggacagacagacggagagggaAGCCCAGACCTTCAATAAAAGCAGCAGCTTAGTGGCGCCCCCAAGTGGCTCCTCATTGTCACTGCGGCCCTGCAGCCCCCCCCTGCCCTCTCACACTTCCACAGGCAGTGCACCAGGCACCCCCAAACATCCCCAGCTCCCGGTGAGAACCCCTCAGAAAATCAAAGCCACAGTTGCTAACATCCCGGTGGGCAGCTACGAGGGAGGAGGccgaggaaaggagagggagaagaaccgagagagggaaagggagaaagaaagagagaacactgGGGCCAACAGTCGTTTTTCCTTTGAGCTGGAGCGTCCTGTGGAGTCGACGTccccctcccaacacacacacactgctgaggaGCCCCCCTCTGACAGACCCCCTGAGGGACACGACCCTGGGGACAACACTGACACATGCAGCACAGAGGCCAGCAacaaggagTCCGGGTGGAAGGACTCTGTCCCCTCCTCACCCCTGCCCCCTCCCTTGGGTACAGACCCTGCCCTGCCACCTCCCCAGAGCGACAAAGACGCCCCTCCTCCCAAGAAGGTGAAGGCCCGCCCCCCGCCACTCAAAAGGACCTTTGACTCTGTGGACAAgGTGTTGTCGGAGGTGTATTTTGAGGAGCGTTTTGCTCAGCTACCAGAGTTCAGGCCAGAGGAGGTCCTGCCCTCCCCCACCCTGCAGAGCCTGGCCACCTCCCCCCGCGCCATTCTGGGCAGCTACCGCCGCAAGAGGAAGAACtccacagACCTGGACTCGTCCACAGAGGACCCTGTGTCTCCGAAGAGGAGGAGCAGAAGGCGCTCCAGCTGCAGCTCGGAGCCCAGCACACCCAAGAGTGCCGCCAAGTGTGAGGGAGACGTCTTCACCTTCGACCGACCAGccCCCCCGTCTGTGTGTCCCCCTCCAGGGACAGGTGCTGATGGAGAGGACATCCTGGGGGAGCTGGAGTTTGACAAGGTGCCCTACTCCTCTCTGAGACGCACCCTGGACCAGAGACGAGCCCTCGTCATGCAGCTCTTCCAGGAGCATGGCTTCTTCCCCTCAgCCCAGGCCACGGCAGCCTTCCAGGCACGCTACTCAGACATCTTCCCCACCAAGGTGTGTCTGCAGCTGAAGATCAGGGAGGTCCGACAGAAGATCATGCAGACTGCCGTCCCCTCTGAGACCAACGAGGCCTCCTCGCTCCCCGGACCGTCTGGCGCCCAATCAGGGGAAGGGACAGGAGGAGGGGCGGAGCCATTGGGAGAGGAGGCGGatcgagagagggagggtagtCCAGAAGAGCCGAGGGATTCGCAGGAGTCTTCTAGATGAAGGATGCCGACAGGCTGGATTGACCAATCAGCGATGGACCAGTTCCCCAAATCCCGCCTCTTAATTTTGTTGAAGCTACAcccctctgtctgtgtgcgtatctggaccggtctctctctctttctccagagaGCCAGGTCAGAAAGAGCAAGTGGACGAGACCAAGAGGATGTGTGTTTGCAAAATGTGTCAGAGGTGgaattgtttaaaactttttaaaaaaaagtgtaattCCCCCTCTCCAAAAAATGACATTTAAAatgccagtcacacacacacacacacggctgatGAACCCCGAACTCCAATACTCACACTTGAATTAGCACTTTTTTAGTAATATTAATATTATCCCTGTAAGCTTCCATTGATGCCAGTGGACTATAGACTATACAATAACTCTCCAGCTGTTTCCCATTGCCTTGGAGCAGGGCCCATCTTTCAGACTGAATAGCATATCATTTACTGGGACTGTTTGAGGTCATTTATCTCACTCTAACAGGACTGGCTTGTTTTTAAAAATGGAGGGCGTGGGAAGCAAGATCAGTTAATTGGCTGCTGAAGAGGGTCTGGCTCTCAAGTCTCCCATTGGCTAATTTGTTTCTGCTGGACATTAGGGGGCTGGGTCCCCACTGGCTTGAGATGATGCCATTGGATGGAGAGCCCGCACTACCCTGGTGAGGGATCAGAAGGATCCTTGTTTTGTTAGATTTTTCTCTACTTTGATCCATAAAAGCATAACTTCAGGACAGGTCTgtgagggggacaggagagagttTAGAACCTCGCCCTCACTTCCCATGATTGGCTACAGAAGATGCCAGTAAAGCGTGCACCAAGCGTTCCTGCTTGTCTGATTCGCTCGCCATGCGGGGAGAAGGAGTCAATGGGCACATCATGGCTTTACATTTCTCACTCGGTCACTTCAACCATGTTTTATCTATTTGTAGACTTCAGTTGAGAACCCAGAGGAGTCAGGCTGACAGGCCTATTACTTCTAATGCCAAGCAGTTTTATTATCTaactttctttttttaaagacatcaaacttgtctttttttttaatcaaacacATGTAACTTTGCAGTTCATTATGTTATTATTGTATTACTGTTACTTATATTACTCCTCTCATTGTTATAGTGGACCTGATCCTTGCTACGGGCTGGTATCAATGTCATATGATTAGCTCTAGCAACCGGTTTGCATATTTGATGGGACGTTTGAGAGAGATGGTCCTCACCTgtgcctctttccctctcttttgtcTTCCCTTTCAACACCCTCAATTCGCCCCAGCAAGGACCTGGGGTGACAAATATTTGTATTAATTTCAATGAGGGATAACAAAAAGAGGGTTGACATTTGTATTCATTTAAGTGTAATAAGTATGTTTTTGGACAACCCTGTATaccgctctctctcactcccctgctAGTAAGGTTTGATTCTAtagcctcctccttcctccctcttttccttccGTTCATCCTTCCTTACTGTTCTCTCTAGATCTTTTTTTGGGGTGGGAGGAGATAAGCCTGGAGGGGGCAGGGCAGTATATAGAGTGGTAGGGTATAATATTGGTTGTCTTTGTGCAAGACCTGGTTGTTGTACATATTATTTACTGTAGCCAGGAGACTCACTATAATATTAAGGAACAATGTGTAACTGACTTGTATTGACTTTTAAAAGACGACATTACACAAGGTCAAACTCCAAAAATGGACAAATTATTATTGTTTTACTCCTTGTTTTACTGAGATACAGTTTGCAAGAAACTTAAATTATTCATAAATGTACATCTATCTTTCAGTATACAAATAAATGTTCAAGTTAACATATTTTTCACTAGTTTTTAATGTACACACAGCTGAACCAACAGTTATTGATTAGTTATTATTGtccaactatactgaacaaaaatataaacgcaacatgtaaagtgttgctcccatgtttcatgaacggaaataaaatatcccagaaatgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139101 lncRNA upstream 19147 20970455 ~ 20970984 (+) True G120502
TU139094 lncRNA upstream 27318 20962063 ~ 20962813 (+) True G120498
TU139091 lncRNA upstream 31303 20958105 ~ 20958828 (+) True G120495
TU139081 lncRNA upstream 56087 20932743 ~ 20934044 (+) False G120487
TU139083 lncRNA upstream 56170 20932743 ~ 20933961 (+) True G120487
TU139153 lncRNA downstream 49237 21108093 ~ 21108341 (+) True G120540
TU139169 lncRNA downstream 106158 21165014 ~ 21165265 (+) True G120555
TU139170 lncRNA downstream 107833 21166689 ~ 21167553 (+) True G120556
TU139171 lncRNA downstream 114139 21172995 ~ 21174078 (+) True G120557
TU139173 lncRNA downstream 116619 21175475 ~ 21175735 (+) True G120559
XM_021623653.2 mRNA upstream 12650 20900204 ~ 20977481 (+) False erfl3
XM_021623645.2 mRNA upstream 12650 20900206 ~ 20977481 (+) False erfl3
XM_036941479.1 mRNA upstream 105055 20741051 ~ 20885076 (+) False pou2f2a
XM_036941570.1 mRNA downstream 16384 21075240 ~ 21103699 (+) True LOC110509817
XM_036941594.1 mRNA downstream 46644 21105500 ~ 21136731 (+) False LOC110509776
XM_021590875.2 mRNA downstream 46645 21105501 ~ 21136731 (+) False LOC110509776
XM_021590882.2 mRNA downstream 46645 21105501 ~ 21136731 (+) True LOC110509776
XM_036941605.1 mRNA downstream 89466 21148322 ~ 21311249 (+) False LOC110534415
TU139026 other upstream 13932 20974851 ~ 20976199 (+) True erfl3
TU139024 other upstream 16211 20900274 ~ 20973920 (+) False erfl3
TU138671 other upstream 571003 20407862 ~ 20419128 (+) True G120169
TU138791 other upstream 669875 20319739 ~ 20320256 (+) True G120259
TU138741 other upstream 805506 20179408 ~ 20184625 (+) False LOC110537348
TU140444 other downstream 483241 21542097 ~ 21547034 (+) True LOC118938333
TU140532 other downstream 526565 21585421 ~ 21586101 (+) True G121677
TU140829 other downstream 762358 21821214 ~ 21825094 (+) True LOC110537735
TU140958 other downstream 957806 22016662 ~ 22018815 (+) False G122030
TU141079 other downstream 1283671 22342527 ~ 22346615 (+) False LOC110537939

Expression Profile