RNA id: XM_021590907.2



Basic Information


Item Value
RNA id XM_021590907.2
length 4429
RNA type mRNA
GC content 0.57
exon number 8
gene id LOC110509793
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 21064067 ~ 21074205 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CGCTTGATGACTGACAGGGAATGTATCCAATCACTTCCTTCCTAAGTCACAAGGCCAGAGCGCAAGGCAGCAGAGCGTGCCGACAACAGGGGGATGATCCGAGGACAAACGATGTTTTTCTTGCACCGAAATGTTTCTCTGCCAGACGATTCACGATTTGAAATGCGTACTGTCAAATCAGTGCATTAATTCACTTATAGCCGGAACGGAGAGTGCATTGTTGCTTCTGCGGAGCTTTGTGACTACCTCACGAGGGATTGTCCAACGACAGTAGATGAGAGGCTCCCTCCCTGTTGTCCTGACATCACAGAACATCATAGTGAGAGACCTGAGGAAAGAGGCTAGCTACTTTACAAATCATTGTTACTGGTTCAAGCCCTAAAACTCACAACACACTGTTTGCTCACTAACAGACATCAGTCTTCAGTTCAACAATCGAGGCACACTTGTATCAAGAtcgtaacacagagctgtaactCAGACCAGGACAGGAGCCTTTTTATCATTCTTTGAATTGTGCTGACCAACACACACGGTCCTAAAAAACCGCCTTGCAGTAGTCATGGATGACCAGCAGGAGGACCCAGAGGGCATGTACGACGTGCAGCACCAGTACATGTGCAGCGAGTGCCACCAGCTCTTCAACACCCTAGAAGAAGTGCTGATGCACCAGCAGATCCACACAGggcaggagggagaagagggggaggccATGGCCATCCAGGGCATCTCAGAGTACGGGGACAGCCAGTATCAGTGCCTGGAGTGTGGTGCCCTCCTCAGGAACCCAGATGAACTGCTACTGCACCAGGAGCTGCAcatgagagaggcagggttggaGACAGAGGACcatgaactgtgtgagGTGTTAGAGACAGACGAGGCAGGGACAGAGGGCCAGGTGTCGGGGCCTGTCCAGTACCAGTGTCTAGACTGCCTGGCCCTGTTTGACTCTCCAGAGGTGTGGCTGGCCCACAGACAGACCCACAGCAAGAGCAGCACACACAGTGCCACAGAGACTgAGTATGTGTTGCAGCCCGATGGTACTGTGACACCCTTGGTCAGTGTTCAGAACTTTGTCTTGAGTGAACAACAAGCTGGGGAGATCTTAGCACAGGTCCTggcccaacaacaacaacatcagtcTGCCCCCCAGCCCTCGACCCCCTCCCGGGCCACCTTCCCACCCCCCGTCTCCCCCCTTCCCGGCTCGGCCACCATGCGTCTCCAGATCTGCAGTGCCCAGGCCCTGGCCGATGGATCCAGTACCCCCGGGCTACGGCGCGCCAAGCTGCTGCCCCCTCTGCTCACTCCTCTAGGGGTGGGCTCGGTAGGAAAGCTAGGGGTTCCAGAGAACGGCCTCCAGAGACTGGAGGTGGCGCTGTCTGCTGTCCGGGAGGAGAAAGAGCAGCAGGGGGAGGTGGTGATCTTCCACCCCTATGAGTGCTCCGAGTGTGCCCTCCTCTTCCAGACCCCAGAGGACTTCCTGCAACACCAGGGGGAGCACTTCCTGGCCCAGGAGAAGGAGAGTGGTGAGGACGGGGTGATGATGGGATacgaggaggacagagggagggaggaggagagagaggaggagaatgggGGGAGGGtggcagaggagagggggaagggaacagggagaCGCGCCCTGGCTAAAAGATCTAGAAACACACCCCTATGCCTGCACTGCAGCCAATGCCAGCGTACCTTCACATCAGCCAATCGGCTGGCGGCACACAGGCGCGTGCACGAGCATGGCACATACGAGTGCCGGGAGTGCGACAAGGTGTTTAAGAAGGCGATGTCACTGCAGACACACATGCGCTCTCACTCCGGGGAGGCTCGGTATCTGTGTGTGGACTGTGGTCACGGCTTCAACACAGAGATGACCCTCATCATACACAGGAAGTCTCACACAGCAGAGCCGCTCCACAGGTGTGAGCACTGTGCCAAGACCTTCACCAATATGACCAAGTTCCTGTACCACCGTAGAACACACACCACCAAAGCAGCCACCACTACACCTACCCCCGTCGTCCTGGTCCCAGCGGCCCCCAGGAGGATGTCCCTGTCAGCCCTGTCCATCCTTCAGAGAGCCCGGGCcctgagggagaggggtgagggcaGCCCCATGGAGGGGGACGAGGAGAACCTGATGGCCCCCCTTACTGAGGCTGAGATGGAGATAGGCGAGTCGGGGGAGGACACTGCCTCCAGCTCCCTGAACAGggcagagggaggaaaggagaacgGGGTGGATGTGGAGGGGACACCAGGGGGCAGTGGAGAGTCCCAACCGGGAGAACATACTGCTGATCCTGGTTCCTCTACTGACCCTAACCCCTCTGGTCCAGCTGGCCCCCGGGGAGCGTTCCCCTGCCCCTCCTGCCCTGAAGCTTTCCCCTCCCTGCTCCGCTTGGTCAAACACCGCCATACGGCCCACGTCTCCGAGCGACACTTCAAGTGCTCCGTGTGCACCAAGACCTTCAAGAAGCAGATGCACCTACGCAACCACCTGCGCACACACACCGGCGAGCGGCCCTTCCAGTGCTCAGACTGCGGAAAAACCTTCTCGTCCCTGGCCAACCTGTCTCGCCACAACCTCACGCACTCTGGCGTGCGCCCCTACCGCTGCGACATCTGCCACCGGACATTCACCCAGTCATCCAACCTCCGGCAGCACCGCCTACTCCATGCCAACCTCCCTCCCTGGCCCTGCCCGGACTGCCCCGCCACCTTCGTACGGCCGGCCAAGCTAGCCGCCCACCGCTACACTGTTCACCCGGGGGCCCCGGCCCCGTTCTCCTGCCCCCAATGCCAGGCTGGCTTCCTGCACAGGAGGAAGAGAGACCACCACTGTCAGGAGGTCCACCCCACTGAGGcccaggcagacagagagagtgggttAGAGAGCCAGCCCCAAGTGTACCCTGACGGGGAGCCCCTCTCAGAGCCCTCCACCTCAGAAGACACCGGGACCACCAGCATCATGAGAGGGGGCCTGGACTGCACTGTGTGTGGGAAGAAGCTCAACTCTGCAGCCAACTGGCGTCTGCATCAGCTGAGCCACGGCCTGGTTCCTGGTCGGTCCTGTGGTGGTGCAGTGGCCAGGGGTAAATCCCACCAGTGCCTAACCTGCGGTAAGCTGTTTGTCTCCTCCTCTGGCGTGACCTTGCATCAGCGCATCCACACAGGAGAGCGCCCCTTCCCCTGCAACCTGTGTGGCAAGCGCTTCCGTCAGAACACGCACCTGCGAGAGcacctgcgcacacacacaggggagcgGCCGTTCCGCTGCGAAATATGTGACAAGGGCTTTGTCCAGAGCATGCACCTGGCGGAGCACCGGCGGACGCACACGGGGGAGCGCCCCCACGCCTGTCTGGTGTGCGGCAAGGCCTTCAAGTCCTTCTCCAACCTGCGGAACCACAGGAAGACCCACGCACGCCAGCAGAGGCAGGAGGAGGCGGCCGCAGCACAGGTTGCCATGGAGACCAGCGCCGCCGTGGCGCTAGTGGAGGCATCCCAGGTGGAACTGGCCAATGGGCAGCCTCAGCTGTTCCACATACAGACGTCGACCCAACAGCAGACTCAGGGTACTCCCACCATCATGTGTAATGAGTTTGGGGAGACCATCGCCATCATAGAGACCAGTGAGGGAGGAACCCTACCCCTGGCTGAGGCTATAGAGATCTACCACACAGCCCTGGAGAGCAGTCTGAGGATGGACTCCATCTCTGTAGACAGTCTACAGCTCATCTAAAGGCCAGACAGAGACAACTCAGAACCATGACCGGACCATCAGATAACCCTCACACGACGATCTAGATGTTCTGAGGGTCAAAGAGACACGACTCGGAACTATCACAGAACTGTCATAGAACCATCAAACAAGCCTCAAATATGTATCTACAGCTACCGAGAGCCAGTGAGAGGCTCAACTATTGGAGAACCATGACATAACTACCTGTGTGGGCTGTGGGAGTGTACTGACTCTTGACTGGCAGAGAGCATGTTTTACTGACTGTTATCCTATTGGGGTGAATGTATGGGGAGCAGTAGAAGATTAAACTGTGATCTAGTGAACTACAGCAGTGTAGGAACACTGGTCTGGTTGTCATTGTTGAGTACAAAAATGATTGTCTAAAATTGCAGCAGGCAGGACAACAGTAGGTGTTCATTCACTCCTCCAGACCAAATGTGTTACGATCTCATGTTCAGAAAGACAAGACAGAGCCGGTCAGTGGTGGTGGAGAGGTAGTGACAGACGTGAATCGAGGGCCATTTCCTGTGTTTGTCATGTTCTTGACTGCCCATGGATGTTCATTCAGTGCTTGTCTGTAATATGTGATTTTTACTTTGAAAACAATGACTGTTTCTCTTTTTGCTGTAAATAGATAAATGAATGATTAAATGATATTTGATAATA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU140196 lncRNA downstream 27721 21034039 ~ 21036346 (-) False G121402
TU140197 lncRNA downstream 27721 21034039 ~ 21036346 (-) True G121402
TU140184 lncRNA downstream 46512 21016522 ~ 21017555 (-) True G121391
TU140178 lncRNA downstream 55767 21007525 ~ 21008300 (-) True G121386
TU140165 lncRNA downstream 73959 20989661 ~ 20990108 (-) True G121373
TU140242 lncRNA upstream 10174 21084379 ~ 21089156 (-) True G121437
TU140261 lncRNA upstream 49096 21123301 ~ 21123516 (-) True G121456
TU140262 lncRNA upstream 51862 21126067 ~ 21126526 (-) True G121457
TU140275 lncRNA upstream 63434 21137639 ~ 21137875 (-) True G121462
TU140280 lncRNA upstream 74127 21148332 ~ 21148671 (-) True G121467
XM_036941455.1 mRNA downstream 375212 20673776 ~ 20688855 (-) True LOC110537483
XM_021623558.2 mRNA downstream 388035 20673776 ~ 20676032 (-) False LOC110537483
XM_021623547.2 mRNA downstream 390789 20668568 ~ 20673278 (-) True LOC110537475
XM_021623535.2 mRNA downstream 398848 20662992 ~ 20665219 (-) True LOC110537468
XR_002475629.2 mRNA downstream 403080 20651234 ~ 20660987 (-) False LOC110537462
XM_021623668.2 mRNA upstream 247808 21322013 ~ 21348882 (-) False LOC110537544
XM_036941641.1 mRNA upstream 247808 21322013 ~ 21348882 (-) False LOC110537544
XM_036941651.1 mRNA upstream 247808 21322013 ~ 21348882 (-) False LOC110537544
XM_036941659.1 mRNA upstream 247808 21322013 ~ 21348882 (-) True LOC110537544
XM_036934603.1 mRNA upstream 302221 21376426 ~ 21379023 (-) True LOC110534425
TU140219 other downstream 5218 21056598 ~ 21058849 (-) True G121421
TU139978 other downstream 436367 20626557 ~ 20627700 (-) True G121208
TU139931 other downstream 563480 20498896 ~ 20500587 (-) True G121188
TU139863 other downstream 598278 20462682 ~ 20465789 (-) True LOC110509624
TU139782 other downstream 851700 20211068 ~ 20212367 (-) True G121046
TU140354 other upstream 214411 21288616 ~ 21346687 (-) True G121533
TU140595 other upstream 388488 21462693 ~ 21463030 (-) True G121738
TU140631 other upstream 416062 21490267 ~ 21547037 (-) False G121756
TU141778 other upstream 722302 21796507 ~ 21812432 (-) True G122733
TU141817 other upstream 777228 21851433 ~ 21855901 (-) False G122761

Expression Profile


XM_021590907.2 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 30.
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XM_021590907.2 Expression in each Bioproject

Bar chart with 21 bars.
XM_021590907.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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