RNA id: XM_021623740.2


Basic Information

Item Value
RNA id XM_021623740.2
length 3458
RNA type mRNA
GC content 0.42
exon number 9
gene id LOC110537588
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 21395164 ~ 21411507 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAGGGCAAAAATAATAGTTTTTCAACTGGGTGTGTTCACCAAACTAAAGCGTACACAGTAGCTACTATACATGCATCTGTCTAGTGGTTCGAATGGATTCTCGAGCCTTTAACTTTTACCTTTCACTATGTTTTCATGTTGTAGGGTTGTGTTATGGAAAAGGTTTGTTACCAGCAGAATCCATGGTCGGGGAGGTTACACACAATGTGACATTCACAATCGTTAATCCACCAAACGCAGCATTTAGGACAGTAGCCTGGACAGCTAATGGTACTAATGTAATAACCAGTGGTGGCGGCACGGCTGACGCTATAGGTACTGGATATGTAGGAAGAATCACTTTGAACTCTACTACTGGATCTCTGGAACTCAGGAATCTAGTCCTGAGTGACACGGGAGAATATGCAGTCTCTATATCAACAATTGGAAAACCAGACGAAGGGACTACTACATTGAGGGTGTATGCGCCAGTCTCCAAGATGACAATAACTGCCAACAACATAGACTTAGTGGAGTTCAACAGCTCTGTCagtctgtcctgctcctcctctggcTCCTCCCTCTCTTACCGCTGGCTGAATGGCAGCTCAGAGTTCACAGCCAGTGATGGAGTTCAGCTTGATGATGGAAACAGCACTCTCACCATAGTCAGAGTGACCCGGTATGACCAGGGGCCGTTCTGGTGTATTGTCTCCAACCCCATCAACAGTGACAGTGAGAGTATAACCCTCACCATCAGCTATGGTCCAGAAAACATAAAATTGAAGGTGACCCCTCTAGATGTACTGTATGGATCAGGGTCAGACCTCACTCTGTCCTGCTCAGCTGAGTCCAGTCCTCCTGCCCAGTTTCAGTGGGCTCTGAATGGAGAACTGCTGTCCAATCAGGGACCAGTACTCAAGCTGGAGAACATCCAGGCCAGTCAGAGTGGTAGGTACAGCTGCTGGGCCCATAATACCAGAACCCTGAGGTACCAGACATCTGAGCCCTCTGACATCACTGTGCTGGAAAGAATATCTAGTGCTAAACTCACAATTTCACCAAACCCTCCAATCATCGAAGGGGGTTCTGTCACCTTGACCTGTGATGCTTCTGGCTCCATCAGCAACAGAGACTGGATGAAGGATGGTCAGCCTCTGTCTCCTAGTGAAAGAATCATCTTCTCTGAGGATAATAAGACCGTTTCTATCAGTCCTTTGAATTTAACAGATTCTGGGATATTCCTGTGTCATCTCGCCAACCTTGTCAGCAATGTGAATGCATCTTACAATCTCGCTGTTAGTTTGAAGGGATCAACACAAGGTGGACCGAATGTTGGTGCCATCGTTGGTGGTAGTTTGGGTGCAGTAGCTGTGGTTACAGTGATAGGTGTGGTGGCAGCTATGAAAAAGGGCTACTTCAAGAAAATAACTTCCGGTGGAAGGACAGTTGGCAACAGTGAAAGCTCTACTAATGGAGGGGGGAAAGGAGGAAACCAGgAGCTGAACTATGCAGACATCACGCAATTCCAGAAGAGGGATGGTGGGTCAGTTCAGCTGGGGAACCTGGGTATTTCCTCCACAGAGTACGCTCAGGTCAGAGTCAACAACAGGCCCGGTCAGCCGACCTAACCCACCTACCAGGCCCACCAATCCCAGTACACCCAGGTGAAAAAACCTGCCCATAAGCCTGCCCCTGATGCTGCATCCACCGTTTCTCAGACGTCCGAAGGAACTGACCACCCCTCCCTGTCAATCATCTGGACCAGTTGGGGTCAGTCAGGGTGACTAGGCCTGTTCAGACATGGTCAGTGAAGCCCCACAACCTTCTCTGTCAATGTGCCAACCAAACTTTTTCTAATAATGTATCCCTTATCAGGCCTTACAGATCCCTGGACAAACAAAAATGTCAGTTGACCCCTTAGCTATTATCATTACATTGGGTGTTAATCTGTTTTAAAATGCATACTCAACTAAGAGTAATGATAATGTCGTAATAGCTCATCAGATCGTGATGGATAGTGAATATATTGATATACACAAATAATACAGCTACATACACAATGTGCCACTAAATATAGTCTCTCTAACTGCTCTTTTCAGTTCTCATACATACAGTAGTGTTGAAGTAACTGTACTATATGACAAATAGTGAAAATCATTAGCATGCATCCCATGATTTATTAGAACAGCAACACAGAGGAACACCATTTCTCAGGGTGACATGGGTACCTTATCCCTGGTCATTTGCATGTATGGTGTACATGATACCTTATGTACTGTTAGATATCACAACAATGAAATGAAATAGCGTGTGCAGTATGTGTACATGATAAATACTGTTTGCTTTGTTTATTAGCAATAGATGGCTCTCTCACTGTTGATTTGTTTGTCTGGGTGTACAGTGTGTGCATTCAATAATTATTTGGATCAATAATTTCCCTATGGCTATTTGATTATTAAAACACCAATAACAAGATGGggaataaaatataatatttttcttATTAAAAGTTGACATGAACGAAACCAACAATGGTTATGTCGGTGACAAGGTGCAGTACCACACACATCTATCATAAAACGACCTGTATTTTGGCTTGAGGACAACATACTGTAGTCCCAACCATGCATGGGAAGTTTTTAAACACCACACTACCCATTTAGCTTTAATAATAAAGCCGTATTTATTATTTGGGACATTTTCTACAGTGATGCTTGTACCTCAAACCTATTTCAATAACACATTACTATATTTTAAATTATTCAACTAATGTACAATATGAGAAAGTAGGCTTGATTTACAGTAAGATACTTGTACtgctagttccgaccgtgcagcaATATTAACAAATCatctaacaattacacaacaaCTACCTACTATATTTGTATGTTTAAATGATTAAATGAATGTACAATGTGTGAGAAAGCAGGCTTGATTTACAGTAAGATACATTTATTAATCTTTATGGTTTATTGTGGTTCCAAGCATTTTTGTTATTTGTGAATCCACCTATATTTGAGTCATTATGTATTTTGCAGCAAAAACAGAAGTGTCTGTATGCTTAAGAATTGTTTATTTAATGTcaaatgtactgtacatgatTTAGTGCCATATCTACTCCCAAACCAAACATTCCAGTTTATCTACTTCCAAACCAATCATAGAGTTATGTAAGAACACAGGGGAAGGCACAGCGTGGGTAATGCTATACTCCAACATCAAAGGCCCTCTCGGTCAACACTCTCAATACACTTAGTAATTCCTTTGTACTCATATGAATCCATTGGTTCCTATGATGTCAATGTGGACTTGTCATTGAAGTTTTATCATTCTGACCTGCTACTGTACATACTGCACATGATTATTGTCATAATGAATTGTAGACTCGTCTGTTTACAATACAACTATTTGTTTTGAAATAATTGCACTTTTATGGAAGAATTTACATTTTGATGCCAATAAATTATATTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139269 lncRNA upstream 14877 21380076 ~ 21380287 (+) True G120646
TU139264 lncRNA upstream 18597 21376234 ~ 21376567 (+) True G120641
TU139255 lncRNA upstream 32143 21362619 ~ 21363021 (+) True G120632
TU139249 lncRNA upstream 35671 21352155 ~ 21359493 (+) True G120627
TU139248 lncRNA upstream 42406 21352155 ~ 21352758 (+) False G120627
TU140449 lncRNA downstream 52922 21464429 ~ 21464811 (+) True G121618
TU140447 lncRNA downstream 64307 21475814 ~ 21548364 (+) True G121616
TU140455 lncRNA downstream 75464 21486971 ~ 21545894 (+) True G121624
TU140521 lncRNA downstream 175084 21586591 ~ 21593365 (+) False G121676
TU140520 lncRNA downstream 177257 21588764 ~ 21593365 (+) False G121676
XM_036941605.1 mRNA upstream 83915 21148322 ~ 21311249 (+) False LOC110534415
XM_036941615.1 mRNA upstream 83915 21148322 ~ 21311249 (+) False LOC110534415
XM_036941619.1 mRNA upstream 83915 21148323 ~ 21311249 (+) False LOC110534415
XM_036941629.1 mRNA upstream 86621 21148324 ~ 21308543 (+) True LOC110534415
XM_021590875.2 mRNA upstream 258433 21105501 ~ 21136731 (+) False LOC110509776
XM_036941681.1 mRNA downstream 66135 21477642 ~ 21491358 (+) True LOC110537581
XM_036961738.1 mRNA downstream 100833 21512340 ~ 21530893 (+) True LOC110534436
XM_036961743.1 mRNA downstream 119741 21531248 ~ 21533013 (+) True LOC118944067
XM_036941721.1 mRNA downstream 121480 21532987 ~ 21547038 (+) False LOC118938333
XM_036941753.1 mRNA downstream 144398 21555905 ~ 21570363 (+) False LOC110537595
TU139028 other upstream 379273 20991754 ~ 21015891 (+) True LOC110509768
TU139026 other upstream 418965 20974851 ~ 20976199 (+) True erfl3
TU139024 other upstream 421244 20900274 ~ 20973920 (+) False erfl3
TU138671 other upstream 976036 20407862 ~ 20419128 (+) True G120169
TU138791 other upstream 1074908 20319739 ~ 20320256 (+) True G120259
TU140444 other downstream 130590 21542097 ~ 21547034 (+) True LOC118938333
TU140532 other downstream 173914 21585421 ~ 21586101 (+) True G121677
TU140829 other downstream 409707 21821214 ~ 21825094 (+) True LOC110537735
TU140958 other downstream 605155 22016662 ~ 22018815 (+) False G122030
TU141079 other downstream 931020 22342527 ~ 22346615 (+) False LOC110537939

Expression Profile