RNA id: XM_036961743.1



Basic Information


Item Value
RNA id XM_036961743.1
length 1057
RNA type mRNA
GC content 0.50
exon number 4
gene id LOC118944067
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 21531248 ~ 21533013 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACCCCTGGTCTAACTGATTGTCTTTTGAATCATAGATGGACCGGAGATGCCAATAATTACAGGACCAGCATTAGGAGAAACAGGACACAGCGTGACCTTCAACTGCTCAGcttcctctcagcctctcagccagttcagctggttcttcaatGGCTCCCAGGTGGCAACTGGCTCAAAGTATGATACTGGCCCACTGACTTTAGCCAGTCATGGGGTGTACACCTGTGTGGCCTTCAACAACATCACTGTCAGAAACAGCACTGTCACCAAGATGCTCACTGTCGTTGCAACAGTGACCATGACCATGGTGAAAGTCATTGGAGCCCAGCCAATCCTGAACGAGAGATTCTCTCTGACCTGTGGCACCGCTGGAACGGTTTACTCCATTCAGTGGATGAGGAACGGCTGGCCTCTGTATGCTGACAACAGAACAGACTTCTCTATGAACAACAATACACTGACATTCAACTCTGTCCAGCATTCTGACAAAGGAGACTATCAGTGTTCTGCCTCCAACCCCTTCAGCAACATGACCAGCCCATACTACAAACTGATCGTCAACTATGGACCGGAGATGCCAATAATAACAGGACCAGCATTAGGAGAAACAGGACACAGCGTGACCTTCAACTGCTCAGcttcctctcagcctctcagccagttcagctggttcttcaatGGCTCCCAGGTGGCAACTGGCTCAAAGTATGATACTGGCCCACTGACTTTAGCCAGTCATGGGGTGTACACCTGTGTGGCCTTCAACAACATCACTGTCAGAAACAGCACTGTCACCAAGATGCTCACTGTCGTTGCAACAGTGACCATGACCATGGTGAAAGTCATTGGAGCCCAGCCAATACTGAACGAGAGATTCTCTCTGACCTGTGGCACCGCTGGAACGGTTTACTCCATTCAGTGGATGAGGAACGGCTGGCCTCTGTATGCTGACAACAGAACAGACTTCTCTATGAACAACAATACACTGACCTTCAACTCTGTCCAGCATTCTGACAAAGGagaatatcagtgttctgcctcCAACCCCTTCAGCAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU140449 lncRNA upstream 66437 21464429 ~ 21464811 (+) True G121618
TU139269 lncRNA upstream 150961 21380076 ~ 21380287 (+) True G120646
TU139264 lncRNA upstream 154681 21376234 ~ 21376567 (+) True G120641
TU139255 lncRNA upstream 168227 21362619 ~ 21363021 (+) True G120632
TU139249 lncRNA upstream 171755 21352155 ~ 21359493 (+) True G120627
TU140521 lncRNA downstream 53578 21586591 ~ 21593365 (+) False G121676
TU140520 lncRNA downstream 55751 21588764 ~ 21593365 (+) False G121676
TU140525 lncRNA downstream 55751 21588764 ~ 21594643 (+) False G121676
TU140526 lncRNA downstream 57923 21590936 ~ 21593365 (+) False G121676
TU140519 lncRNA downstream 59012 21592025 ~ 21593365 (+) True G121676
XM_036961738.1 mRNA upstream 355 21512340 ~ 21530893 (+) True LOC110534436
XM_036941681.1 mRNA upstream 39890 21477642 ~ 21491358 (+) True LOC110537581
XM_021623739.2 mRNA upstream 119741 21395164 ~ 21411507 (+) False LOC110537588
XM_021623740.2 mRNA upstream 119741 21395164 ~ 21411507 (+) False LOC110537588
XM_036941709.1 mRNA upstream 119741 21395164 ~ 21411507 (+) True LOC110537588
XM_036941753.1 mRNA downstream 22892 21555905 ~ 21570363 (+) False LOC110537595
XM_021623757.2 mRNA downstream 22901 21555914 ~ 21570363 (+) False LOC110537595
XM_021623748.2 mRNA downstream 23068 21556081 ~ 21570363 (+) False LOC110537595
XM_021623765.2 mRNA downstream 23097 21556110 ~ 21570363 (+) True LOC110537595
XM_021623806.2 mRNA downstream 138477 21671490 ~ 21676920 (+) True LOC110537622
TU139028 other upstream 515357 20991754 ~ 21015891 (+) True LOC110509768
TU139026 other upstream 555049 20974851 ~ 20976199 (+) True erfl3
TU139024 other upstream 557328 20900274 ~ 20973920 (+) False erfl3
TU138671 other upstream 1112120 20407862 ~ 20419128 (+) True G120169
TU138791 other upstream 1210992 20319739 ~ 20320256 (+) True G120259
TU140444 other downstream 9084 21542097 ~ 21547034 (+) True LOC118938333
TU140532 other downstream 52408 21585421 ~ 21586101 (+) True G121677
TU140829 other downstream 288201 21821214 ~ 21825094 (+) True LOC110537735
TU140958 other downstream 483649 22016662 ~ 22018815 (+) False G122030
TU141079 other downstream 809514 22342527 ~ 22346615 (+) False LOC110537939

Expression Profile