RNA id: XM_021623859.2



Basic Information


Item Value
RNA id XM_021623859.2
length 9308
RNA type mRNA
GC content 0.60
exon number 43
gene id LOC110537646
representative False

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 21757293 ~ 21804410 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGCTGtcatatacaaaaacaataaacatttCATGAGGTCAGGCAATAAGCAAGTAACATTTCACGCTGGCTAGTGTGCTTATGCGTAAGAGGATAGTTTATGGCAAAAATAATGAAGATATGTCTGAAGCTGCGACAGAtgtatttaattattattatgatttaGCTAACCATCATTGAATAAATGGCCAACGACTGCGCTTTTGCATCTGGAGTAAAGTTAGCTTggtcgctaactagctagcagccATCCAGTAAGCGCGAGCCCCTGCGGAGGGTGGTCTGTGTCCTGTGATTCCGGACATCGAGTACTGGAGTCCAGTGCTGGAGTCCGACGATCCTCTTTGGTTCCCGGCTTGTGAGCGAGGTAATCGGACAACCCCATCTTCACCTCCTCCACCTATTCCAGGTGGGGGAGAGGATGGCCTCCCTCCTCCATGTCCCCCTGCTGGGGTTGCTGCTGGTGGCTGTAGCCCCTGGGTGTTGGGCAGGAGACTGTAAGGGCCACAGACAGGTGCTCAGGGGCCCCCCAGGGTACGTCACAGACGGGCCAGGGAACTACTCTGTAAACGGGAACTGCGAGTGGCTCATCAAAGCCCCCAGCAGCAATTACCGTATCGTCCTGAACTTCACCTTCATGGAGACAGAATGCACCTACGATTACCTGTTTGTCTACGATGGAGACTCCTACCAGAGCCCCCTACTGGCCAGTCTGAGTGGCAACACCCTGCCGCAGCCCATAGAAGCCAAGTCTGGCAAGatgCTGCTCCACCTCTTCAGCGATGCAAACTACAACCTCCTGGGCTTCAATGCCACCTACTTGTTCTCTGTGTGCCCTGGGGCCTGCGGAGGTCACGGGCGCTGTGACACGGCCTCGTCCCTGTGCCAGTGCCACCTGGGCTGGGGAGGAGCCGACTGCAACACCCCTCTATGTCCCCAGGCCTGCATCCTGCACGGCACCTGTGACAAGAGAGGAGAGCGTTGTCTATGCAGCTCGGACTTCCTGGGCCAGAGCTGTCAGCTGGGTCTCCGTGATGACAGTGGGGTGGGGCAGTGGTGGCAGGTGAGTGGGGGCGACCCATACATGCCCCCCCGGACCGGCTCTGCTGGGGTCTACCTGTCCTCCACTGGAGCCATGTACCTGTTTGGAGGGTTTGACCTGAACCGAGCTTTGGGGGACCTGGTTAAATACAACTTCAGCTTGAACCAATGGGAGAACAGATCTTATGGACACTCCCCAgCGGCTCGTCACTCCCACACGGCAGTAGAGTGGAAGGGGAACATGGTGATCTTCGGAGGAGAGCTCATGAGCGGCGCTTTAGCCAGCGACGTCTGGATGTACCGCCCAATCCAGGAGGACTGGCAGCAGCTCGGCCAATCCCATTCGCCCGGGGCACCGAGGGTGGCCAACCATGCAGCATCTGTAGTGGACAACTATCTCTACATATTTGGAGGTCGTACAGAAGAGGATATGTTCTCATCATCTTTGTATCGGTTTGATCTGCGGGAGTCTGGGGTGTGGGAAGCGGTGCAGCCCACCGGGGGGAAGCCTCCCGCCACAGCAGGCCACTCCATGGTGTTTCACCCCCCGTCCCGGGCACTGCTGGTTTACGGGGGCCACAGGCCTACCACCGCCAGgttCAGTGTACGTGTGAACTCCACGGATGTATTCCATGTGGACCGGAGGTTTTGGACCTCGTTCCGTTCCCGTTTCCCAGCCACAGGCCCCAGGGAGAGAGCCTTCCACTCAGCCACCATCATCGGCAACTACATGGTGGTCTATGgggGGAATGTGCACATCCACTACCAGGAAGAGAAGTGTTATGATGAGGAAATCTTCTTCTACCACCTAGGGTGTCACCAGTGGGTGTCAGCTGGGTCGAGCCTCCAACACAGAGGAGAGTCTGTGAGAGGGCGGTACTCCCATGTAGCTGCTGTGATGGAGGGCAGGGTGCTGCTGGTTGCCGGGGGTTACAGTGGTATTGCCCGTGGAGACCTGGTGGCATACAAAGTTCCGCTGTTTGTGAGCAGCGACCCAGGAGACCGGgatgctgtgtgtgCCGAGGCACCAGACGAGAGCATGTGTCTGAAGAACCCAGAATGCAGCTGGTGTGAGGGCCGCTGTCGGGagtaccaacccaccaacccgTGTGGCAGCACAGGGTGCCTGGGCCTGGCCCGCTTTCTGTCTGACTGCCAGTCCTGCCTGGTGTTCAGTGGGGCTCCAGGTTCTCTGCCCCGTGCCCCCGGTGACTTCGGCTGGTGTGTCCAGAACGAGTCCTGCCTACCTGTGTCAGATCAAAGTGCTTGCCGTGTGGACCAGATCTCAGGGGCGTACGGCTGGTGGGGGGAGCGTACCCGTTTCCTCACCTCACTCCTTTCCTGTCGCACTGACAACTATGTCCCGGGACTGCACCTGCTCACCTTCCAGCACCCCCGCAATGACTCCCAGCCTGACAAGGTGTCCATCCTGCGCAGCACCTCCATCATCCTCAGCCCCACCACAGAGATGGATGTCACCTTGCAGTTCCGGGGCTTCATCCACCCTCTGTGGGGTGCCCCTCCACCTGCACCCCCTCCCACTGAGACAGTTTCCATGTGGGCCCGGATACAGAGGCTACACTTTGAGGCCCGCATGGCTGCTGGACCCAACTCCCTGCAactgaaggAGGTGGTaggtcactgggcagctcaccaGGAGAAGGAGACGAAGCTGCTGTCCCGTCCTGACATGGGTCGTCTGTTTCCCAACCTGACCCGGGGGAACCGCTACCTGGTCCAGGCCGAGGGATACCTCAACAACTCAGGCTCTGGACAGACCAGTGAGATGGCCCTGACCTGGAACAGAACCGCTCTGCCCGGTGGAAGTgAGATTTCCTTCCTGTTCTTGGAGCCGTACCGTTCTGGCTCTTGCTCGGGGTACCAGTCTTGCTTGGCATGTCTGTCAGACCAGTCCTGTGGCTGGTGCCCGTCTCTGGGCCGCTGTCTGTTACGTGCCCTACCTGCCCTGGAGCCCTGCCCAGAGGACCAGGGGGGAGGGGAATGCCACCTGCTGCTGGCCCCTCCACAATGCACCCTCTGTGAGGAGTACAGGGACTGCTCCGCCTGCACTCAGGACCACTACTGTGAGTGGCAGATCAACTCCAGCAAGAAGGGTGATTACCAATGCAGCCGACGGGGGAAACTGGATGGATCCATTCGCGACCCAGGGGGGTGCCCTAAAGTCTGCAACCAGAGGAGGACGTGTGGGGAGTGTCTGTCTAACTCCAGTCAGTGTGCGTGGTGTGAGTCAGCCCAGGCCTGCTTCTACTTCGCTGCCTACCTCACCAAGTATCCCTACGGAGAGTGCAGGGACTGGTATGACAGTGTTCACTCAGTGCCCCAGTGTAAGCAGTGCTCAGCTCTGGTCACCTGTACAGACTGTCTCCAGACGTTTCAGTGCGGCTGGTGTGGAGACTACAACAACCCCACCATCGGCAGGTGTCTACGAGGAGACTGGGGAGGGATGGACGACGCCTCTGTGTATAACTGCAGTGTGGCTGTGGATGAAGTACGGGCTACCAGtCCTGAGCCCCAGACCTTGGCCCCCCCGCGGCccatggagatggagatggagctgGAAcacatggaggagagggagagggacccAGTCTGGTCCTACCCCAGCTGTCCTGATGTGGAGGAATGCAGGCTGGGCCTCCACAGCTGCCACCCCTTCGCCACCTGTGTCAACACCCCCACCTCCTTTGAGTGCCACTGTGAGAGGGGCTACACCGGGGACGGCACCCTGCACTGCAACCAGAcTTGTTATAATGAGTGTCGTGAGGGCCAGTGCAGCGGCAGCCCGCGGTTCGAGTGTGAGTGTTCCCTGGGCTGGACATCTGACCCAGCCACACTGGTGCTGAGCGGGGTGGAGTGTGACGTGGACTGTGGCTGTAACTTCCACAGCACCTGTATCACTGCCCCAGGCATCTGTGACCACTGCCAGGATTGGACAATGGGTCTCCAGTGTGAGCACTGTCGACCAGGGAGTTTTGGTTCTGCGCTGGCCGGGGGCGGGGGCTGTGTGCCCTGCCAGTGTAACGGCCATGGAGGCCCCCTCCTGGGCTACTGCCACAATCAGACAGGCCAATGCTACTGCACACACCACACCCAGGGACCACACTGTGAATCGTGCTTGCCTGGATACTACGGAGACCCCAGGAATAATGGCACCTGTTTCCGTCAGTGTCAGGGGCGCTCTGTGATCCTGTCCCACCAGTCACCCCTCTCTGAGCTCCCCATCTCGTCCTCCCTGGGGTGGCGAGGGGGCGTCGGGGGGAAGGGGGGACTCTCCCACTGTCTGTgggtcctgtctgtctctgagaaCCTGGTCCCCTGTGTGCCGGGCAAGCTGTGCCCTCCTGTGGCTCTCACCCTGCACCCAGACTCCTACACACAGTGCACTagctcCTACGTTTACGTGTTTGACGGCCTGCCTCGTTTCTTGAGCAACGGGGTGGTGCACTCGGACCACAACCTGATTGGCGCATTCTGTGGGACGACCCGGACTCAGCCAATCACTGTGGAGGCCACTTCAGGTGTGATTTCTGTGTACTTTGAGGCCAATGTCTCGTCCGACCGCCCTCAGGGTTTCAACGCCTCCTTCTGGGTGCGGCGCTGTCGCCAGGGTTCTGAGGCGGGGGAGGATGGGTCACCTGTATGCCAGGGAGGGGCGCAGTGCAGCGGGGGGCTGTGCCAGTGTACTCAGGGGTATGGGGGACCGTACTGCGACAGGCCCCTCTGTCCCGAGGGCTGTGGGCTAGCAGAGGGCCGAGGCTCCTGTAACTTGtctctgggagtgtgtgtgtgtgcagacggTTGGGGCGGCTCTGACTGCTCCACCCCTCTGGACTCCAGCAGCCTAGTTTGGGAAACCCTACTGGACACACAGCTCACAGCGAACCAGGCCCACAGGTTCCTCCACCGGATGGGCCATTCTCTAGTGTCTGGACCCCAGGGGAACCTCTGGATGTATGGAGGCCTTTCTCTCTCAGAGGGCATCCTGGGAAACGTCTacagGTACTCTGTGTTGGAGCGGCGCTGGACTCAGATGCTGACCAGCTCAGTGGAGGAAGGCTCCACCCCCAGCCCCCGGTACCACCACGCCTCTGCCCTTCTGGCCAGTCACGAGCCTCTCTCCGGCGGTCAAGGAGCTACTCACAACCTCATGCTGGTGGTGGGCGGTGTCACGCAGAAGGGTGTCGCCGTGGATACGTGGAGCCTCAACCTCAGCAGTCTGGTGTGGCGACAGCACAAGAGCTCAGTGCTGCCACCGGTGGCAGGTCATACTCTAACGGTGCGTCGGGACTCCTCTATGCTGCTCATCGGAGGTTACTCTCCAGAGAACGGCTTCAACCATCACCTGCTGGAGTTCAACATCCACTCTGGCAACTGGACTGTCGCCCCCCACACCGGCACACCTCCTACAGGTCTGTATGGCCACTCGGCTGTGTACCACGAGCAGACGGACGCCGTGTACGTGTTCGGAGGCTACCGCTTCCACGTGGAGACAGTGGAGCCCTCAGGAGagctctacagtctctattatgcCAACCTCACCTGGTCCCTACTGGTCCCCTCACAGGGGAATAAGcccctgtcccgTTTCTTCCACGCTGCAGCCCTGATAAAAGACACCATGGTGATTGTGGGAGGGAGAACAGGAGTGGAGGACTACAGCAACACGGTGTATCTGTACCAGATCAACTGTAACACCTGGATACAGCCAGactcGGCGGTGGGCGAGCCGGTTAACCGTTCAGTGTCTCTGGCCATGGCGGCCTGGGGTGGGCGGCTGTTCCTCTCTGGGGGGTTCAACGGGGTCACCCTGGGGCGTCTTCTCACCCTGACCCTTCCCTCTGACCCCTGTGCCTTGCTGCCCACGCCCGAGGCCTGCAACACCACCACAGGCAGTTGTGTCTGGTGCAGGGGCACCTGCGCCGCCTCTGATACTGCTGAGAGactggGCTGTTCCATTGGTCAGTCTCCCTGCTCCCCCACCCCTCGTCTACCAGACCAGTGTCGCAGACTGAAGACCTGCAGTGAGTGTCTGGCACGCCACCCCAGGACCTTCTCTAGCCCCTCACAGTCCCAGTCTGCTCTGCAGTGTAAGTGGTGCACCAACTGTCCAGAGGGAGCATGCATCAGCAGTACAGTCAGCTGTACCTCAGAACACGACTGCAGGATCAACCAGAGAGAGATCTTCCTGTCCAGCAACTGTACTGAGACCAGCTGTGAGGCCTCCGACTGCCCCAAGTGCACCGCCTCAGGGAAGTGCATGTGGACACGCCAGTTCAAACGCACCGGCGAGACCAGGCGCATCCTGAGTGTGAACCCCACCTACGACTGGACGTGCTTCAGCTACGCCCTGCTCAACGTGTCCCCCATGCAGGTGgagtcctcccctcctctgccctgcCCGCCCCCCTGCCACCACCTCAGCACCTGCAACCTCTGCCTGGGCTCCCGGGGCTCAGACGGGGGCTGGCAGCACTGTGTGTGGAGCATGGCACTGCAGCAGtgtGTGAGTCCGTCCTTCGTGCCTCTGCGCTGTGAGGCGGGtcagtgtggtcgtctgctgtcTGGTGGGGACTCTTGCTCCCCCCAGTGCGCTCAGCTTACCCAGTGCTCTCAGTGCATCGCCTGTCCCCAGTGTGGCTGGTGTGCTGCCCGGGGGGGCAACGGGGCTGGACGCTGCCAGCAGGGAGGCCTCAACGGTGTGAGTGAGGGAGTGTGTCCCCAGGGAAACAGCAGCTGGTCCTTCCTCCACTGCCCAGAGGAGGATGAGTGTGCCAACGGCCACCACCACTGTAACGTCACCCAGGACTGCCATGACCTGACCCAGGGATACCACTGCACCTGCAAGCAGGGCTACGTTCTCAGCCGTGTGTCAGGCCAGTGTGAGCCGGTCTGTGCTCAGGGCTGTGTCAACGGGACCTGTGTGTCCCCGGGAGTGTGTCAGTGTCACTTTGGCTTTGTGGGGGACAACTGCTCGTCTCAGTGTCGTTGTAACAAACACAGCAACTGTAAAGGAGTGTCTGAGCCTGACAAGTGTCTGGAGTGTAAAAACAACACTATGGGTGATCACTGTGAGAAGTGTAAGCCCCTGTATGTGGGGTTGGCGGTGGGCGGGGGGACGTGTCGCCCCTGTCGGGAGTTCTGCAGGGGGAACAGCGCAGTGTGTCTGTCCCGGGACGAACACAAGAGGGCGCTAGACCACCCCCAAGACCACCCTCTGGACCCAGACAGCATTGTTCAGTGGGTGTCGGAGGGTCCTACAGAGGACTCAGCGGTTTGTGTGAGCTGCCAGAACAACAGTGTGGGGGACAAGTGTGAGAGCTGCCTCAGCGGCTACTTCCTACTGCAGGGGAACTGTGACAAGTGTCAGTGTAACGGCCATGCAGACACGTGTAATGAACATGACGGCACAGGCTGCCCATGTCAGAACAACACAGAGACCTCTTCCTGCCTCAGCAGCCCGCAGAGCGACAGGAAGGACTGCTACAGAACACAGTGCGCCAAGTGCAAAGACTCCTTCAATGGCACACCGGTAAACGGGCGTCAGTGCTACCGCCAGTTCAACGTGGACAATGAGTGCTGCTTCGACCCCACCTCTCAGACAAACTGCTTCCACGACCCCACCATCCGCAATTTGCCCAAGGGACGCACTGTCTTCTTCGCTGCTCAGCCAAAGTTCACCAACGTGGACATCCGGGTCACCATCGACGTGACCTTCGGGGAGGTGGAGGTGTACGTGTCCAACTCCCATGACACCTTCATCGTAGAAGTGGACCTCCACACAGGCATCCACGCCATCAAGATCGAGGACGAGTCGGTGGCCCGAGGTGGGGCGAGCGGAGGGGATAAGGAGACACCTCCGTCACCTATGAAGGTGTATGCCAACTCCTCATCCAGCCTGGGTGGGGCCATGCTCCCCAACACCCCCCTGCAGCTCCACGCCAAGCCCCAGGGGGCGGACAGGGAGGTACGGGAGGCCAAGACGGAGGGGCTCATCTCCTATATCACGGTGTGGAAGCCCCAGACGGTGCTGATTGTTCGAGGTGTCCGTGACCGCGTGGTCATCACCTTCCCCCATGAGGTCCACTCCCTGAAGTCCAGCCGCTTCTACATCGCCCTGCGCGGGGTAGGCGCCGAGGAGAGACGGGGCGAGTCCCAGGGCCTGCTCTTCCTCCGCCAGGACCAGGCTCACATCGACCTGTTCgtcttcttctctgttttcttctcctgcttcttcctcttcctctccgtcTGCGTCCTCCTCTGGAAGATCAAGCAGTTCATGGACTTCCGCCGAGAGCAGAGGCGTCATATCCAGGAAATGACCAAGATGGCATCCAGGCCCTTTGCCAAGCTCACTGTCTATTTGGAGCCAGAGGAGCCCCAGCTCATCTACCTGCCCTCCACAGGGGGCGGAGGGGTGGGGGGCAGTGCCGTGTCCCTGGCCCATGCACGCACAGGCAAGCTGGGGGGCATTGTAGTTGGCCAGAGGGGGCGTGCTGGAGCCATCTCCTACAAACATGAGCCAGGCTCCGGCCCCACCGTCCACCACCACCTTACCCTCGGTGGAGGGGGCAACAGCGGGCAACACCTGCCCCTGCATTACCTCAACACCCACCAGTATGTCCCCACCAACACCACGGCCTcgcacccccaccaccacccatcCTCCCACAGTGGCTACCAGCACTTCTGCCGCTCTGACCCCTTCCTGTCCCAGCTCATGGGCTTCTCCTACTCCACCTTCAAGGTGGGGCCCATCACCCTGGAGCCCACGGACGACGGCATGGCCGGGGTGGCCACCGTCCTCATCCAGCTGCCGGGGGGCATCCTGGCCCCTAATCGTGCCTGCCTGGGGTCCGCCCTGGTCACACTACGGCAAAACCTCCAGGAGTACTGTGGTCACGGCAATGGAGGGGGAAACCCCGGGGTGGGAGGGGGGCGCAAAGGCCTGCTAGGGCATCAGCACCTCACCACTATGGCTatgtagagaagagagggggagaaagtagatgagagagaggggtatgtgGTGGGGTGGTAGTAACATGTTAAGAGCTTAGAAGAGAAATGGGGGGTTACATGAAAAAGGCCATAGAGGAGAAAGTTGTGTAAGAGCCTGttaaaacctctagtgactccccatcccgcatgagggagcgtaatcattgactgacactaattagcataacgcaacggacataaatattcctattcatgaaaatcacaagtgaaatatattgagacaca

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU140814 lncRNA upstream 28556 21728474 ~ 21728737 (+) True G121920
TU140791 lncRNA upstream 45157 21711588 ~ 21712136 (+) True G121897
TU140792 lncRNA upstream 46715 21709313 ~ 21710578 (+) True G121898
TU140765 lncRNA upstream 60291 21696636 ~ 21697002 (+) True G121884
TU140757 lncRNA upstream 63317 21693761 ~ 21693976 (+) True G121877
TU140835 lncRNA downstream 7942 21798351 ~ 21812247 (+) False G121930
TU140836 lncRNA downstream 7942 21798351 ~ 21812247 (+) True G121930
TU140849 lncRNA downstream 58965 21849374 ~ 21850846 (+) False LOC110537720
TU140847 lncRNA downstream 59583 21849992 ~ 21850846 (+) False LOC110537720
TU140850 lncRNA downstream 59583 21849992 ~ 21850846 (+) True LOC110537720
XM_021624155.2 mRNA upstream 15124 21736749 ~ 21742169 (+) True LOC110537775
XM_021623817.1 mRNA upstream 48932 21705264 ~ 21708361 (+) True LOC110537629
XM_036941801.1 mRNA upstream 52530 21698295 ~ 21704763 (+) False LOC110514317
XM_036941810.1 mRNA upstream 52530 21699881 ~ 21704763 (+) True LOC110514317
XM_021623806.2 mRNA upstream 80373 21671490 ~ 21676920 (+) True LOC110537622
XM_021624142.2 mRNA downstream 3115 21793524 ~ 21799614 (+) False LOC110537766
XM_036942106.1 mRNA downstream 3415 21793824 ~ 21799614 (+) False LOC110537766
XM_036942115.1 mRNA downstream 5227 21795636 ~ 21799614 (+) False LOC110537766
XM_036942124.1 mRNA downstream 5230 21795639 ~ 21799614 (+) False LOC110537766
XM_036942130.1 mRNA downstream 5571 21795980 ~ 21799614 (+) True LOC110537766
TU140532 other upstream 171192 21585421 ~ 21586101 (+) True G121677
TU140444 other upstream 210259 21542097 ~ 21547034 (+) True LOC118938333
TU139028 other upstream 741402 20991754 ~ 21015891 (+) True LOC110509768
TU139026 other upstream 781094 20974851 ~ 20976199 (+) True erfl3
TU139024 other upstream 783373 20900274 ~ 20973920 (+) False erfl3
TU140829 other downstream 30805 21821214 ~ 21825094 (+) True LOC110537735
TU140958 other downstream 226253 22016662 ~ 22018815 (+) False G122030
TU141079 other downstream 552118 22342527 ~ 22346615 (+) False LOC110537939
TU141080 other downstream 552118 22342527 ~ 22346505 (+) True LOC110537939
TU141081 other downstream 558174 22348583 ~ 22349936 (+) True apoc4

Expression Profile


XM_021623859.2 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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XM_021623859.2 Expression in each Bioproject

Bar chart with 21 bars.
XM_021623859.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
End of interactive chart.