RNA id: XM_021624092.2


Basic Information

Item Value
RNA id XM_021624092.2
length 2090
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC110537735
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 21821165 ~ 21825285 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATCCATTACCTGATTGGTCAAGGCCAGGTTTAGTAGGCACTTTAAGGACATAAACTAGGAAGTGCAGCGTTTTTATGGCGTCGACAAAGAATTCAAATGAAGAAGCACTCCAGTCAACAAGATGAAGAGCAAACCTGGGAAAAAGCAACACAACCAAACTAAGATGTCTAAACAACATCGAGACCCCATCAAAACAGTGTGTGGAAGACAGTCAGATGATGTTGACTGCAATAGAGAAGAACCAGACATTAGTCAAGCACCCTACATTACTAAAGGAGTTTGTATCAGCTCCATCCAAATCAAAGAGGAACCAACAGACTTTGAACAGCAGGGAATGGGAGAGGAACAAAACCGTTCAGTTCCTTCCTTCCAGAAGAAGCACATCAAACATCAAAATACATCCAATCCAATGACCGGGTGTAGCCAGATATCAAGGAGTCCTATGGTGATGCTAACAAGATTGTCTAATGTGGTGGTTAAGACTCTTCTGCGAGACACTAAAGTgtgtttggtgaaggaggaaaaCCCAGACGAGACAGATGGAGtATCTACTTCTCAGTTCTTTCCTTGTCCACACTGCACCATTTCCTTCACTGACTGTTACTTCCTGGAGAATCACATCAAGACCAAACACCCGAAGCAGTACCTGGCCATGCTGAAAGGCCACGTCTCAAAGAGTAAAACCGTGTATGCCCCCACACACAGCTGTCCCCACTGTAGCTGCATGTTCCATACCCCACGGCAGCTACACGTCCACACCCGTCaggcccacccctctccctctctgagaAAACTCCACCCCTGCCCCTATTGTGCCCGCAGCTTCCAGTACATAGCCAGACTGCATACTCACTGCAAGGTTTGGCACAAAATGTCTGTCGCTTTCACCGATGGGTACCTCAGTTGCGCTGACTGTGGAAAGAGCTTCAAGAATTGCTGGGGACTGGGGCCTCACCAGTGTCACAAGCCTGAGGACACTAAGCTTGAGAATGGCCCTGTCTGTCTGAACATTGGCATGCCATGCTCAGAGTGTGGCAAAAGCTACTCTAGTCCTCGGAATCTGCGCAttcacatgcgcacacacaccggCGAGAAGCCCTACGTCTGTAAGGAGTGTGGCAAGAGCTTCTCAGAAGCCAGCAGTCATTGCAAACACATGATGATACACTCGGGGGTCAAGCCATTCAAATGCCAGGATTGTGGAAAGGATTTTGCCAGGATGGGGCGCCTCCGAGTTCACATGACTATTCACTCTGGCGAGAAGTCTTTCTCCTGCTCCAAATGTGACAAGCGGTTTGCATACAAGGACTGTCTGAATCTTCACCTGCGCACACACTCAGGGGAGAGACCTTTCAAGTGTACTGTGTGTGGTAAAGACTTTGCTTACAGAAATTATCTGAAGTTGCATCTGAAGATCCACAACAATGAAAGGAACTACCATTGTGGGGTTTGTGGGCTGAAGTTCATAAACAGTGCAGCATTGAAAACCCACCAGCGCACACACACTGGGGAGAGGCCTTTCCATTGCACAGTGTGTGACAAGACATTTTTCCGACATGAACACCTGAAGAACCACCAGCGCACTCACACAGGTGAGAAACCATACACCTGTACCGAGTGCGGTAAAAGCTTCACTCAGTCTGGAGATCTGACCAAACACAAGCGCATCCACACTGGGGAGAGGCCATTTGAATGTTCTGAATGCCACCGACGGTTTATCTGTTCTGCTGATCTGACCAGACACATGAGGATCCACAATAACTCACGGCCATATCCCTGCCAAGAGTGTGACAAGAGATTCCGCTTGGCCAACCACCTTAAAATTCACATGAGGACCCACACTGGGGAGAGACCATACTCCTGCCCCCGTTGCCATCGCACCTTCACTCGCACCCACCACCTCTCTGGTCACCTGCCTAGATGTCACTGAATGATGAAATTAGAATGTATATAAATAGTATTTTACTCTTGTTGTAGTGATTCAATAAGGGAACAGTGATGTACAGAAGATGGTTTTGTGCCTGACTCTGTTGTGGTAATGCCAATAAAGGCCTCTATAGTCTGTGAGAGATGGCACGCCTGTTATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140835 lncRNA upstream 8918 21798351 ~ 21812247 (+) False G121930
TU140836 lncRNA upstream 8918 21798351 ~ 21812247 (+) True G121930
TU140826 lncRNA upstream 16755 21790182 ~ 21804410 (+) True LOC110537646
TU140841 lncRNA upstream 43003 21777627 ~ 21778162 (+) False LOC110537646
TU140814 lncRNA upstream 92428 21728474 ~ 21728737 (+) True G121920
TU140849 lncRNA downstream 24089 21849374 ~ 21850846 (+) False LOC110537720
TU140847 lncRNA downstream 24707 21849992 ~ 21850846 (+) False LOC110537720
TU140850 lncRNA downstream 24707 21849992 ~ 21850846 (+) True LOC110537720
TU140833 lncRNA downstream 30677 21855962 ~ 21856420 (+) True G121929
TU140879 lncRNA downstream 33025 21858310 ~ 21858797 (+) True G121962
XM_036942079.1 mRNA upstream 8813 21805611 ~ 21812352 (+) False LOC110537743
XM_036942088.1 mRNA upstream 8813 21805611 ~ 21812352 (+) False LOC110537743
XM_036942061.1 mRNA upstream 8813 21805619 ~ 21812352 (+) False LOC110537743
XM_036942065.1 mRNA upstream 8813 21806112 ~ 21812352 (+) False LOC110537743
XM_036942071.1 mRNA upstream 8813 21807093 ~ 21812352 (+) True LOC110537743
XM_021624024.2 mRNA downstream 9160 21834445 ~ 21838508 (+) False LOC110537677
XM_036941977.1 mRNA downstream 9446 21834731 ~ 21838508 (+) False LOC110537677
XM_036941996.1 mRNA downstream 9515 21834800 ~ 21847982 (+) False LOC110537677
XM_036942041.1 mRNA downstream 9516 21834801 ~ 21847982 (+) False LOC110537677
XM_021623906.2 mRNA downstream 9517 21834802 ~ 21847982 (+) False LOC110537677
TU140532 other upstream 235064 21585421 ~ 21586101 (+) True G121677
TU140444 other upstream 274131 21542097 ~ 21547034 (+) True LOC118938333
TU139028 other upstream 805274 20991754 ~ 21015891 (+) True LOC110509768
TU139026 other upstream 844966 20974851 ~ 20976199 (+) True erfl3
TU139024 other upstream 847245 20900274 ~ 20973920 (+) False erfl3
TU140958 other downstream 191377 22016662 ~ 22018815 (+) False G122030
TU141079 other downstream 517242 22342527 ~ 22346615 (+) False LOC110537939
TU141080 other downstream 517242 22342527 ~ 22346505 (+) True LOC110537939
TU141081 other downstream 523298 22348583 ~ 22349936 (+) True apoc4
TU141439 other downstream 985482 22810767 ~ 22811263 (+) True G122459

Expression Profile