RNA id: XM_036941866.1


Basic Information

Item Value
RNA id XM_036941866.1
length 7816
RNA type mRNA
GC content 0.48
exon number 30
gene id arhgef1b
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 21967678 ~ 22024337 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACGGTTGACTCCCATGGGTGAACGAGGGGAACGAATACCGTGTAACACAATATTGTATGGAAGCCCAACAGGAAACAACGGGATGGGGAAAGTTACATGAAAACCAGATTTGGCTTAACTAGATCATATTGAAAACTGTATTATTACATCAAAGTAATATATTTTGACATCGTCATGCATTACTTTGCCAGTGGTTTATTCAGATAAAAAAATTCAGTCAAGGGGAAATTGTGCACTTGAATTTGTACTTCCGCGTACAATGTTTTTTTCCAGCAACATACGACAACTTTCGAACAGCAAACCATATTAGACGTTTGTcagtctttttttgttgttgctgtattTTGAGggGGGAGCGTTTGGGGCTCAGTGGTCTAACCCAGCCATGAGCATCATCGGGGCTGAGGATGAGGACTTTGAGAATGATCTGGACCCCaCGGTGGATGACCACAGCAGTCACTTCACCAGTATAGAGCTAGTGAAGAGTCGGCCAACCCACCTGCTGGTCTTCCTTCAGCACGTCATCCTGCAGTTCGACTGCTCCTCCTTGttgTGTTACCTCCATGCTGACCTCTTCAAGAACCTCAGTACCAAAGAGACCAAGAAGCAGTTTGTGGAGTTCTACAACAGCTTCCTGGACAAGAGCGCTATTCTCAGAGTGCAAATCCCTCACAATGTATCGTTTGAGTTGGACcgtaccagaccagacctgctCAGTGAGGAGCAGCAGAGGAAGTTTGTCCAGGATGTCCAGTTGGCTCAGGCCCCAGAGGTGCTGCGACAGCTGGAAGACTTCAGGCAGAAGAGGATGATGGGTATGACCCCTAACGCGGCAGAGCTGCTGGAGGTGGAGTCTCACTACCCCACCGATCGTATCCCCATGGAGATGAAGGAGAAGGCCGTGGCAGAGACCCTGCTGGACAAAATGTCTGAGATCCATCCCTCCATCGTTGCAGACGAGGAGAAATGtTCGTCAATCTTTGCAGCAGTGGCCTTCTACATGAAGCACCTAGGAGTGAAGTCCAGGGTAGCTGACAGTAAGAAGTCCAGAGGGTTCTTCAGGAGACCCCTTGGGAAGaATAAGAAGAGTGAGGAGTCCACTAAATCTAAACAGAAGGGGGGTTTTCCCAACATCCTCAGCGCCGCCGGTGGCTGGATTGCTGGCAGCACTGAGGTCAAACTTCCTAAAGTGGAGGCTGAAGtggatAAAGAGAAGGTGAATCAGGAGCGTAAGGTTTCCAGTGGCCTCGCCCCCTCTCGAGGCTCCTCCACCCCTGATGCTGCTCCTCCAGCATTAAACAGGAAGTCTGTTTCCACAGGATCCTCCCCCCATCAGGGTTTGGAGGTCAGTGAGGGCTCAGGAGTTCACATCAGTGTGACCTCCAGCCCAGACTTCTCCCACAGCGAGATAGGTCTGTTCAGCAGCCGTTCGGACCCCCATTTGGTGGCGGAGGGGGGTGAGCTGTCCCCCGGGGGGATGGCAGGGGGGCTGGCTGTATGGGAGCCCCCCTCACCCAATGAACCCCCCCTGGAGGAAAATCTGGACAAAGACAGACGCAAGACAAGgcgTGTGGGACGCAGTGAGAGTGCTCGTGTGGACAGACATTCCTACCGTCGCCGTGGCTCCTCCCGGGCCAAACAGTCGCGTTCCCGTAGCGACGTGGACCTGCAAGCCGCCGCCACGGCAGCACATTCCTCCCCGACCTCTCCCCACCCCTCTGTTGATGAAGGGGTGTTACTGCCCGAGGGTGTGCTCCCAGGTCTTTCCCTCTCTGGCCCCACCCCCCAGCAGGAGGAACAGGACCCTCGCCTCCTGGAGCTGGAGCAGGACCCGCCCAACTGGAGAGAACACACCCCCCCAGACACGCTCAAAGACCTCAGCAAGAAGGAGACCAAGCGGCAGGAGGTCATCAACGagttgTTTGCGACGGAGCACGCCCATGTGCGCATGCTGAGTGTTCTGCAGACAGTGTTCTGGAAGCCTTTGGAGAGAGAGGAACTCATGACCGCCACAGAGCTGGCCACCATCTTCCCCAGCCTGGACGAGATCATAGACATGCACTATGCTTTCTACGAGCACCTGAAGAAGCTGCGTCAGCACAATTTCATCGTCAAGGCCATCGGAACCACGTTACTCAATAGGtttgGAGGGACGGAGGGTGAGTGGTTTCAGAAGCTGACCTCTAGGTTCTGTAGTCACCAGACGTGGGCCCTGGAACAGCTGAAGATGAGACAGAAGAAAGACCCTCGTTTCAACTCCTTCATACTGGAGGCAGAGAGTCGGCCTCAGTGTCGTAGGCTGCAGCTGAAGGACATCATCCCCACTGAGATGCAGAGGCTCACCAAATACCCCCTACTGCTGGAAAACATTGCCAAGTGCACAGAGGACACCTTGGAGAAGGAGAGTATTCAGCAGAGTGCAGAGTGCTGTAGGAAGATCCTCAACCACGTCAATGAGGAGGTCAAACAGATGGAGAACCtgctgaccctGAAAGACTACCAGCGCAGGCTGGACACCTCAGGACTCAAACCCAGTAACGAGCTGTACCTGGAGTACAAGtaCCTTGACCTGGCCCAGAGAAGGATGATCTATGAGGGGCCTCTGACCTGGAGAGTGACCAAGGAGAAAACATTAGAAGTGCAGTGTGTGTTGTTGGGGGATCTGTTGGTGCTGTTACAGAAGCAGGATGATAAGATGGTGTTGAAGTGTCAGAGTAAGAGTAACATCGCTGTTCAGGAGGGAAAGCAGATGCTCAGCCCTATCATCAAACTAGACTCTGCCTTCCTCCGAGAGGTGGCCACAGACCGTAAGGCCTTCTACGTGATCTTCACCTGGGACAGCGGGGCTCAGATCTACGAACTGGTGGCTCAATCTGTCGGGGAGAGGAAGAACTGGACAGATGTGATCAAGATGGCGGTAGATGAGCTGAAGAAGACAGGACCTCCATCTGACCTGAAGAGAGGAAACAGTATCTtaactggaggaggaggaaaccCATACAGCCCCACCACGTTTCCTCAACCCCCTCTCAGCCCCACTGAAAATGGAGTCTTGTTGAAAAATAGCATTGAACGAGATAAGGACAGCCTGACTGATGAGATGAAGTCTGTGGACTCTCATCATTCTCTGATTGATTACCTCTCGGACAAAGGCTTCGACTTGATTGGCCACAGCAACAGTGATCAGGTGAAAGTGGCCAATAGCGCGTTAAACGAAGTCATGTACCTCAAGAGACTATTGGTTGGCAGCATCAGCCTATCAGACGACTCACAACCTGATGAGCAGAATGGAAGGGAGGGGCCAGAGAGCCAGGACCAAGGACtgcaaggggaggagggggagggaggaggaggagagggtggagggatgaagATAGACGAGGAGGGAGGGATCAGCGCTCCTCTGATTCTGTcccaggagaggatggaggaggtgcGCCGGAAACTGCAGAGTCTGGAGGTACAGCTGAAGAGACTGCAGAGTGTTGAGGAGGAGCACCACCGGCTGCAGCAGGCCCTGTCTAAGTTCTCCCTGGAGGGGGGCAACTTCTAGTGAGACACACAGCGCCACTTTCAGGACACCAGATCACTGTAAGTGCTGGATTGGAGTGCTCGAGTTGCTTTTGGAGGATTGATGAATGCGTCCTGGAATTTCCTATTTACTAAACACTCTGTGCTCCACTGCCATGCCTGAGCCCTTGTTAAAGATTTCCAGGGGGTCGCAGCCAACTGTGAGGCCCTTGCAAGGCAGAGGAGCACGGCTTTACGCAAAGTAGTTGAGTAATGCAATGTGggaggtgtgtttgtgaacatgcTCGTATGTACAAGTGcgtgagagtgtgagagatggGAGTTTTGCAAACAGGTGCCAAAGATTGGAGCAGTAGTTTGCTGTGAGAGAGATGCTGCCTAGGCTTATTGATTGTGAGcttctgcaacacacacacacacaacagatacTTCCCTCAGTGCATGTTCAATAAATATATCTATCATTGCCAACTGTAGGGGTTTGGACTGTATAATAAACCCCCATGTATGCATGTAGAGAGAGATACTAGTGTCAGCCCTATAGAGGGCGATGTAGAGCTGTAGAACCAGACAGGAACATGCTCAGGGTTGTGAAATTCTGGTAACTTTTTTCTGGTAACCAAAATTAACAGGTTTTCCccaaatcctggttggaagattcctggatTCAGGAGGGAATAAGGAGGAATTCTGGGAGTCGTTCAACCGGAGATTTCTGAAAAACCTGGGATTTTTGGGACATTTTACTGAACATTTAGTAGGCCCCTATATCCAGTACATGCCAAAGTACAGCAGAGATGCACCTTTAAGTTAGTATAATCCAATTCAAGTGACCAACAACACTGAATTCCCAACATTGAATTTGCTAAtatgtattactattattattataatatatgccatttagcagacacttttatccaaagcgacttagtcatgcatgcatacatttttacattttacccCAATTGTTGAGAagatctgcgtgtgtgtgtttgtgtgttacagTGTTGTAGAAGCAAAATGGCCTTCTGGTCTAATAGAGTCCTATTAGACCTGTAATTATAGCCCAAACATTCATCCAGTAGTATTTGAATTGATCATGTTGTTAGGGATATAGATGGTGTGTGTACTGCTTTTGACTTCAGCCGCCTCTCCTTTGGACCCTGCTACTGTGCTGGGCCGGGCAATAGAGGGATGGGCAAAAATacagagatggaaggagaggaggaccattTTTATGACTGAAGTAGGATGTAgattatagatggagggatacagcaaggaagagaggagaggaggcagaaggGTTATTCCTTGGAAGACCAACTTGATTAGCAGCGTATTAgatggtgatggaggtagatgtaGAGAGAAGACTTGAAGTTCAGTGTTCAATGTGCTGTGGAATCGGTTATAGGGACCTCCCGAGTGTGCTAGCTGTGCTACTGTGCTTGCTGTGctactagagattctgggttcgagtccaggctctgtcacagccggccgtgaccgggagacccatggggtggcgcgcaattggcccagcgtcgtccgggttatgggagggtttggccagcagggatgctcttgtcccatcgcgcaccagcgactcctgtggcgggccgggcgcagtgcaccctgacacggtcgccaggtgtacggtatttcctccgacacattggtgcggctggcttccgggttaagtggaaattgtgtcaagaagcagtgcggcttggttgggttgtgtttcggaggacgcacggctctcgaccttcggcCTCTCCCAAATCCGTACGGGTGTTGCAACAATGacacaagactgtaactaccaattggataccacgaaattggggaaaaAAAGGGAGTAAAAAAAATCTTTAATAAAATGAAGAATTGGTTATAGACGCAGTCAGTCAGACCcatacacacactgatactcaCATTGCGTGGGAGCCCAGTGCAGTAACAATGGTCACACAGGAGCACGGTCATCACGCGTGTGATGTGACTGGAGTCGACTTCCTGACTATAGGGCTAGTAGCTTCTCTGTAAagaaaggagggagacagagggagacacagtaTTATATGCTGTATGATACATTTTATGGTAGCAATACcatttttgtgtgtatttttctTCAGGAGTTGATTgtaattattgttattattttgatGATTTAGAGTAGTGGCATTGAACTGTGGACTGGGAAACGGGACCAAAGAGAGACCCATGTACCTGTAGATCCTCATATGAGCTGTTTATACTGTCCCACTGCTTATTACTATAGGAGAAAGTCACTTCATGCTGATTGGAGAGGGATGCCTACAGTAAGCAGCCGTGGCTCTCTGCTTCTCCTGCATCCAAACTCCAGCGTCACATGTAGAGAAAACAACACAGTGGGTAGAAACGTAGAGGAGAGATAATGATATCTAAGCTTGTATGAAGACTGTATTGTGATACATCCATCCATGCTGCTGCCCCAGACTAATGAACAAGATTTAACTGGACACTTCACAATCACACTGCCGTTCAAATCCTCTCTTCATTGCTACCATGTGTGAGCAGGGCTGCACTGTGTTGTTATAGACATGACTCACCTAGCGTCACTTTGATATTGACTGGACCACGTTTAGGGACAGCATGGGGTGGcggtacagtacagtaagatACAGAAAGATACTGAGATGAGACCCATCATTACTGATTTAAGCTACTGTTTCTATAGACCACTTCTGGAATGAAAAGAAGCGGGTCTGGGGAGTTCGGATGCAGGAATTGCAGGCGCGACTTGTCGTCACTCTCACCAGTGTTGGAATGACAGTTATCTTTCACGATCACTTTTGAATTATGCATTCTCGTTGTGGCCATAGCAACCATTCCCTTACACCCTCCCCCAAATATGTAATTATGCAAATGTTATTGATAGTTACTCTAAGAAGCAGAGGGCGTAGTTACAAGTTGTGTTGAGACTTCATTGCCTTTTTTTCCTTCACCCCCCACCCCTTTATTTTCTCGTGTTCCCCTCTCCATCACCAAGTCCACAATAATagtctccatctctcattcatcCTGTCTTCCTTCTAGAAGTCGTAGAAATGTAGTCCTTACTACTCTCATCACATTTTCTTATCTCACAATTTCACTGTACGTTGCGgtgtattttatttaatttgCTTAAACGGGTCGGGAGgttttgtttttgttggtgaTGTTTTGTTGAGAGGAACTTTTGTAATGATGTACTATGCAATTGGCAACAatgggagaaagaggaagagtcTTGGATAGCTTTTGTTTGCCATATGTGAGACAACTCACTTGTATTATACAATACTAGATGGCAACAAGATGAGGTTAAAGAGATTATCTCTAACTTGGGCTTTTTCACCATTGAAGCACAGTAATGAGCAGGTTAAATCCTGTTATACCAGCTTAGGTTAATAACTCCACTGCCACTGTAGTCTCAAGACTACTTGGCAAACGTGTGCTtacaaacctctctctctttctctctctttcttccctttgCTTCCCCTCATGTATCCTATTTACAAATGCATAGTGGTCTAGTTTTAtatgtataaaatgtatttatagacAAGGGTGCCATGTTCTGATGATCAAGCTTGTTTTCCCCCCAAATGGCTCTCTAGTAAACAAACACGTTTGGTTGGGGAGATGTTTGGCTGTTAAGGTAGAACCATGAAATTAACGTAGAAAGAGTTGGGTGACCAACATCAAGTCTccagtttcaagttttaatgtcacaagtacagtgaaatgcctttcttgcaatcTCTAAAGCAACATGCATTCTAGGTCTGGCCAGGAGGTTTTCctagtcaggtcacatggtccGGAAACCCCCCTGGCCTTACTTCTAGGTAATCCAAGGTTTCAGATAGGTGGTTTGTGGGGGATTGACTGTAGGGTGGCTGTGTAAGTCCTGCAGTGTCCCCTGTAACTATGCTATCTCAGGGGTATGTATGTTACaaagtgtattgtgtgtgttcaCCTCAGCGACCACAAGGTTTGACCAGCGCCATGTTTGCTCCAGCTAGCCAGCGCTTTGTATAGAACAGGGTCTGGTCTGTCGCACATGCATCCGCCACATGTATATCTATAAACAAATGAATATGCAAGATCTATACTGTGTATTTTGGCTTTGATTTCATTGTGTAAGAGTTTTTAATTGTATACTTCAGAAGAAATGAggtacgtttttttattttttttgtaattttctGTTTTTTAATAAATGGGGaagaaaaaacaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140950 lncRNA upstream 8937 21958327 ~ 21958741 (+) True G122022
TU140910 lncRNA upstream 68063 21899397 ~ 21899615 (+) True G121991
TU140908 lncRNA upstream 70609 21896866 ~ 21897069 (+) True G121989
TU140906 lncRNA upstream 72796 21894659 ~ 21894882 (+) True G121987
TU140905 lncRNA upstream 73173 21894262 ~ 21894505 (+) True G121986
TU141027 lncRNA downstream 77678 22102015 ~ 22102282 (+) True G122077
TU141003 lncRNA downstream 148375 22172712 ~ 22173051 (+) True G122065
TU141087 lncRNA downstream 290108 22314445 ~ 22316058 (+) True G122135
TU141180 lncRNA downstream 349655 22373992 ~ 22374650 (+) True G122225
TU141198 lncRNA downstream 387524 22411861 ~ 22412408 (+) True G122242
XM_036942175.1 mRNA upstream 821 21903363 ~ 21966857 (+) False LOC118938391
XM_036942190.1 mRNA upstream 821 21903365 ~ 21966857 (+) False LOC118938391
XM_036942207.1 mRNA upstream 821 21903366 ~ 21966857 (+) False LOC118938391
XM_036942180.1 mRNA upstream 821 21912681 ~ 21966857 (+) False LOC118938391
XM_036942199.1 mRNA upstream 821 21912681 ~ 21966857 (+) False LOC118938391
XM_021624248.2 mRNA downstream 81 22024418 ~ 22029416 (+) True LOC110537828
XM_021623884.2 mRNA downstream 5726 22030063 ~ 22069249 (+) False LOC110537667
XM_021623893.2 mRNA downstream 5772 22030109 ~ 22069249 (+) True LOC110537667
XM_036942152.1 mRNA downstream 53653 22077990 ~ 22115281 (+) False LOC110537757
XM_036942162.1 mRNA downstream 53654 22077991 ~ 22115281 (+) True LOC110537757
TU140829 other upstream 142584 21821214 ~ 21825094 (+) True LOC110537735
TU140532 other upstream 381577 21585421 ~ 21586101 (+) True G121677
TU140444 other upstream 420644 21542097 ~ 21547034 (+) True LOC118938333
TU139028 other upstream 951787 20991754 ~ 21015891 (+) True LOC110509768
TU139026 other upstream 991479 20974851 ~ 20976199 (+) True erfl3
TU141079 other downstream 318190 22342527 ~ 22346615 (+) False LOC110537939
TU141080 other downstream 318190 22342527 ~ 22346505 (+) True LOC110537939
TU141081 other downstream 324246 22348583 ~ 22349936 (+) True apoc4
TU141439 other downstream 786430 22810767 ~ 22811263 (+) True G122459
TU143220 other downstream 1800356 23824693 ~ 23825502 (+) True G123980

Expression Profile