RNA id: TU140940


Basic Information

Item Value
RNA id TU140940
length 4427
lncRNA type sense_over
GC content 0.44
exon number 3
gene id arhgef1b
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 21967678 ~ 22024337 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGAGGGATCAGCGCTCCTCTGATTCTGTcccaggagaggatggaggaggtgcGCCGGAAACTGCAGAGTCTGGAGGTACAGCTGAAGAGACTGCAGAGTGTTGAGGAGGAGCACCACCGGCTGCAGCAGGCCCTGTCTAAGTTCTCCCTGGAGGGGGGCAACTTCTAGTGAGACACACAGCGCCACTTTCAGGACACCAGATCACTGTAAGTGCTGGATTGGAGTGCTCGAGTTGCTTTTGGAGGATTGATGAATGCGTCCTGGAATTTCCTATTTACTAAACACTCTGTGCTCCACTGCCATGCCTGAGCCCTTGTTAAAGATTTCCAGGGGGTCGCAGCCAACTGTGAGGCCCTTGCAAGGCAGAGGAGCACGGCTTTACGCAAAGTAGTTGAGTAATGCAATGTGggaggtgtgtttgtgaacatgcTCGTATGTACAAGTGcgtgagagtgtgagagatggGAGTTTTGCAAACAGGTGCCAAAGATTGGAGCAGTAGTTTGCTGTGAGAGAGATGCTGCCTAGGCTTATTGATTGTGAGcttctgcaacacacacacacacaacagatacTTCCCTCAGTGCATGTTCAATAAATATATCTATCATTGCCAACTGTAGGGGTTTGGACTGTATAATAAACCCCCATGTATGCATGTAGAGAGAGATACTAGTGTCAGCCCTATAGAGGGCGATGTAGAGCTGTAGAACCAGACAGGAACATGCTCAGGGTTGTGAAATTCTGGTAACTTTTTTCTGGTAACCAAAATTAACAGGTTTTCCccaaatcctggttggaagattcctggatTCAGGAGGGAATAAGGAGGAATTCTGGGAGTCGTTCAACCGGAGATTTCTGAAAAACCTGGGATTTTTGGGACATTTTACTGAACATTTAGTAGGCCCCTATATCCAGTACATGCCAAAGTACAGCAGAGATGCACCTTTAAGTTAGTATAATCCAATTCAAGTGACCAACAACACTGAATTCCCAACATTGAATTTGCTAAtatgtattactattattattataatatatgccatttagcagacacttttatccaaagcgacttagtcatgcatgcatacatttttacattttacccCAATTGTTGAGAagatctgcgtgtgtgtgtttgtgtgttacagTGTTGTAGAAGCAAAATGGCCTTCTGGTCTAATAGAGTCCTATTAGACCTGTAATTATAGCCCAAACATTCATCCAGTAGTATTTGAATTGATCATGTTGTTAGGGATATAGATGGTGTGTGTACTGCTTTTGACTTCAGCCGCCTCTCCTTTGGACCCTGCTACTGTGCTGGGCCGGGCAATAGAGGGATGGGCAAAAATacagagatggaaggagaggaggaccattTTTATGACTGAAGTAGGATGTAgattatagatggagggatacagcaaggaagagaggagaggaggcagaaggGTTATTCCTTGGAAGACCAACTTGATTAGCAGCGTATTAgatggtgatggaggtagatgtaGAGAGAAGACTTGAAGTTCAGTGTTCAATGTGCTGTGGAATCGGTTATAGGGACCTCCCGAGTGTGCTAGCTGTGCTACTGTGCTTGCTGTGctactagagattctgggttcgagtccaggctctgtcacagccggccgtgaccgggagacccatggggtggcgcgcaattggcccagcgtcgtccgggttatgggagggtttggccagcagggatgctcttgtcccatcgcgcaccagcgactcctgtggcgggccgggcgcagtgcaccctgacacggtcgccaggtgtacggtatttcctccgacacattggtgcggctggcttccgggttaagtggaaattgtgtcaagaagcagtgcggcttggttgggttgtgtttcggaggacgcacggctctcgaccttcggcCTCTCCCAAATCCGTACGGGTGTTGCAACAATGacacaagactgtaactaccaattggataccacgaaattggggaaaaAAAGGGAGTAAAAAAAATCTTTAATAAAATGAAGAATTGGTTATAGACGCAGTCAGTCAGACCcatacacacactgatactcaCATTGCGTGGGAGCCCAGTGCAGTAACAATGGTCACACAGGAGCACGGTCATCACGCGTGTGATGTGACTGGAGTCGACTTCCTGACTATAGGGCTAGTAGCTTCTCTGTAAagaaaggagggagacagagggagacacagtaTTATATGCTGTATGATACATTTTATGGTAGCAATACcatttttgtgtgtatttttctTCAGGAGTTGATTgtaattattgttattattttgatGATTTAGAGTAGTGGCATTGAACTGTGGACTGGGAAACGGGACCAAAGAGAGACCCATGTACCTGTAGATCCTCATATGAGCTGTTTATACTGTCCCACTGCTTATTACTATAGGAGAAAGTCACTTCATGCTGATTGGAGAGGGATGCCTACAGTAAGCAGCCGTGGCTCTCTGCTTCTCCTGCATCCAAACTCCAGCGTCACATGTAGAGAAAACAACACAGTGGGTAGAAACGTAGAGGAGAGATAATGATATCTAAGCTTGTATGAAGACTGTATTGTGATACATCCATCCATGCTGCTGCCCCAGACTAATGAACAAGATTTAACTGGACACTTCACAATCACACTGCCGTTCAAATCCTCTCTTCATTGCTACCATGTGTGAGCAGGGCTGCACTGTGTTGTTATAGACATGACTCACCTAGCGTCACTTTGATATTGACTGGACCACGTTTAGGGACAGCATGGGGTGGcggtacagtacagtaagatACAGAAAGATACTGAGATGAGACCCATCATTACTGATTTAAGCTACTGTTTCTATAGACCACTTCTGGAATGAAAAGAAGCGGGTCTGGGGAGTTCGGATGCAGGAATTGCAGGCGCGACTTGTCGTCACTCTCACCAGTGTTGGAATGACAGTTATCTTTCACGATCACTTTTGAATTATGCATTCTCGTTGTGGCCATAGCAACCATTCCCTTACACCCTCCCCCAAATATGTAATTATGCAAATGTTATTGATAGTTACTCTAAGAAGCAGAGGGCGTAGTTACAAGTTGTGTTGAGACTTCATTGCCTTTTTTTCCTTCACCCCCCACCCCTTTATTTTCTCGTGTTCCCCTCTCCATCACCAAGTCCACAATAATagtctccatctctcattcatcCTGTCTTCCTTCTAGAAGTCGTAGAAATGTAGTCCTTACTACTCTCATCACATTTTCTTATCTCACAATTTCACTGTACGTTGCGgtgtattttatttaatttgCTTAAACGGGTCGGGAGgttttgtttttgttggtgaTGTTTTGTTGAGAGGAACTTTTGTAATGATGTACTATGCAATTGGCAACAatgggagaaagaggaagagtcTTGGATAGCTTTTGTTTGCCATATGTGAGACAACTCACTTGTATTATACAATACTAGATGGCAACAAGATGAGGTTAAAGAGATTATCTCTAACTTGGGCTTTTTCACCATTGAAGCACAGTAATGAGCAGGTTAAATCCTGTTATACCAGCTTAGGTTAATAACTCCACTGCCACTGTAGTCTCAAGACTACTTGGCAAACGTGTGCTtacaaacctctctctctttctctctctttcttccctttgCTTCCCCTCATGTATCCTATTTACAAATGCATAGTGGTCTAGTTTTAtatgtataaaatgtatttatagacAAGGGTGCCATGTTCTGATGATCAAGCTTGTTTTCCCCCCAAATGGCTCTCTAGTAAACAAACACGTTTGGTTGGGGAGATGTTTGGCTGTTAAGGTAGAACCATGAAATTAACGTAGAAAGAGTTGGGTGACCAACATCAAGTCTccagtttcaagttttaatgtcacaagtacagtgaaatgcctttcttgcaatcTCTAAAGCAACATGCATTCTAGGTCTGGCCAGGAGGTTTTCctagtcaggtcacatggtccGGAAACCCCCCTGGCCTTACTTCTAGGTAATCCAAGGTTTCAGATAGGTGGTTTGTGGGGGATTGACTGTAGGGTGGCTGTGTAAGTCCTGCAGTGTCCCCTGTAACTATGCTATCTCAGGGGTATGTATGTTACaaagtgtattgtgtgtgttcaCCTCAGCGACCACAAGGTTTGACCAGCGCCATGTTTGCTCCAGCTAGCCAGCGCTTTGTATAGAACAGGGTCTGGTCTGTCGCACATGCATCCGCCACATGTATATCTATAAACAAATGAATATGCAAGATCTATACTGTGTATTTTGGCTTTGATTTCATTGTGTAAGAGTTTTTAATTGTATACTTCAGAAGAAATGAggtacgtttttttattttttttgtaattttctGTTTTTTAATAAATGGGGaagaaaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140961 lncRNA upstream 460 22015130 ~ 22018815 (+) False G122030
TU140959 lncRNA upstream 460 22016405 ~ 22018815 (+) False G122030
TU140962 lncRNA upstream 460 22016961 ~ 22018815 (+) True G122030
TU140954 lncRNA upstream 31651 21986931 ~ 21987624 (+) True G122026
TU140950 lncRNA upstream 60534 21958327 ~ 21958741 (+) True G122022
TU141027 lncRNA downstream 77682 22102015 ~ 22102282 (+) True G122077
TU141003 lncRNA downstream 148379 22172712 ~ 22173051 (+) True G122065
TU141087 lncRNA downstream 290112 22314445 ~ 22316058 (+) True G122135
TU141180 lncRNA downstream 349659 22373992 ~ 22374650 (+) True G122225
TU141198 lncRNA downstream 387528 22411861 ~ 22412408 (+) True G122242
XM_036942207.1 mRNA upstream 52418 21903366 ~ 21966857 (+) False LOC118938391
XM_021624248.2 mRNA downstream 85 22024418 ~ 22029416 (+) True LOC110537828
XM_021623884.2 mRNA downstream 5730 22030063 ~ 22069249 (+) False LOC110537667
XM_021623893.2 mRNA downstream 5776 22030109 ~ 22069249 (+) True LOC110537667
XM_036942152.1 mRNA downstream 53657 22077990 ~ 22115281 (+) False LOC110537757
XM_036942162.1 mRNA downstream 53658 22077991 ~ 22115281 (+) True LOC110537757
TU140958 other upstream 460 22016662 ~ 22018815 (+) False G122030
TU140829 other upstream 194181 21821214 ~ 21825094 (+) True LOC110537735
TU140532 other upstream 433174 21585421 ~ 21586101 (+) True G121677
TU140444 other upstream 472241 21542097 ~ 21547034 (+) True LOC118938333
TU139028 other upstream 1003384 20991754 ~ 21015891 (+) True LOC110509768
TU141079 other downstream 318194 22342527 ~ 22346615 (+) False LOC110537939
TU141080 other downstream 318194 22342527 ~ 22346505 (+) True LOC110537939
TU141081 other downstream 324250 22348583 ~ 22349936 (+) True apoc4
TU141439 other downstream 786434 22810767 ~ 22811263 (+) True G122459
TU143220 other downstream 1800360 23824693 ~ 23825502 (+) True G123980

Expression Profile